Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv08766 Davidia involucrata HOM05D006784 ORTHO05D008508 1.8e-187 659.1 330 100.0
CSS0003574 Camellia sinensis var. sinensis HOM05D006784 ORTHO05D008508 2.6e-149 532.3 328 81.4
Rhsim12G0001900 Rhododendron simsii HOM05D006784 ORTHO05D008508 5.0e-145 518.1 332 78.6
Actinidia01543 Actinidia chinensis HOM05D006784 ORTHO05D008508 5.6e-144 514.6 328 79.3
GSVIVG01037159001 Vitis vinifera HOM05D006784 ORTHO05D008508 1.3e-140 503.4 327 77.7
Oeu035045.1 Olea europaea HOM05D006784 ORTHO05D008508 9.2e-139 497.3 327 75.8
TAR376G1107 Trochodendron aralioides HOM05D006784 ORTHO05D008508 6.6e-137 491.1 281 84.7
Potri.013G095300 Populus trichocarpa HOM05D006784 ORTHO05D008508 8.9e-134 480.7 317 74.4
DCAR_003507 Daucus carota HOM05D006784 ORTHO05D008508 1.5e-133 479.9 313 74.4
QL09p001285 Quercus lobata HOM05D006784 ORTHO05D008508 1.4e-131 473.4 351 70.4
Thecc.08G168600 Theobroma cacao HOM05D006784 ORTHO05D008508 2.7e-130 469.2 326 72.4
Atru.chr13.2579 Acer truncatum HOM05D006784 ORTHO05D008508 4.6e-130 468.4 333 72.1
RcHm_v2.0_Chr6g0249611 Rosa chinensis HOM05D006784 ORTHO05D008508 4.6e-130 468.4 331 71.9
Sopen11g020490 Solanum pennellii HOM05D006784 ORTHO05D008508 7.8e-130 467.6 323 72.8
Sabra13G0081300 Salix brachista HOM05D006784 ORTHO05D008508 2.3e-129 466.1 325 70.8
Manes.02G202800 Manihot esculenta HOM05D006784 ORTHO05D008508 5.1e-129 464.9 330 71.8
CANSAT11G0581 Cannabis sativa HOM05D006784 ORTHO05D008508 1.9e-128 463.0 334 71.0
Cc10_g16080 Coffea canephora HOM05D006784 ORTHO05D008508 1.9e-128 463.0 294 77.2
Migut.C01398 Erythranthe guttata HOM05D006784 ORTHO05D008508 1.9e-128 463.0 309 73.8
Nn5g27234 Nelumbo nucifera HOM05D006784 ORTHO05D008508 1.5e-125 453.4 329 70.2
PSO761G0491 Papaver somniferum HOM05D006784 ORTHO05D008508 2.0e-125 453.0 325 68.6
Lalb_Chr15g0080091 Lupinus albus HOM05D006784 ORTHO05D008508 2.6e-125 452.6 304 71.4
FvH4_2g00320 Fragaria vesca HOM05D006784 ORTHO05D008508 3.4e-125 452.2 328 69.5
Glyma.04G110300 Glycine max HOM05D006784 ORTHO05D008508 4.4e-125 451.8 292 73.3
ClCG08G001730 Citrullus lanatus HOM05D006784 ORTHO05D008508 3.8e-124 448.7 322 70.8
Eucgr.F02928 Eucalyptus grandis HOM05D006784 ORTHO05D008508 4.9e-124 448.4 322 68.6
TPR.G25500 Trifolium pratense HOM05D006784 ORTHO05D008508 4.9e-124 448.4 315 68.6
Gorai.009G262200 Gossypium raimondii HOM05D006784 ORTHO05D008508 1.9e-123 446.4 296 74.0
Medtr3g006210 Medicago truncatula HOM05D006784 ORTHO05D008508 1.9e-123 446.4 310 68.4
Sed0009601 Sechium edule HOM05D006784 ORTHO05D008508 2.4e-123 446.0 323 69.7
ECA232G1810 Erigeron canadensis HOM05D006784 ORTHO05D008508 7.1e-123 444.5 310 70.0
MBI03_g07138_MAGBIO Magnolia biondii HOM05D006784 ORTHO05D008508 7.1e-123 444.5 327 68.8
Ciclev10021219m.g Citrus clementina HOM05D006784 ORTHO05D008508 1.2e-122 443.7 326 69.6
PSO210G0863 Papaver somniferum HOM05D006784 ORTHO05D008508 6.0e-122 441.4 324 66.7
arahy.Tifrunner.gnm1.ann1.9TUP5I Arachis hypogaea HOM05D006784 ORTHO05D008508 2.3e-121 439.5 305 71.1
CsaV3_5G039470 Cucumis sativus L. HOM05D006784 ORTHO05D008508 7.3e-120 434.5 328 68.0
arahy.Tifrunner.gnm1.ann1.VA03RP Arachis hypogaea HOM05D006784 ORTHO05D008508 1.3e-119 433.7 302 70.5
HanXRQChr09g0266871 Helianthus annuus HOM05D006784 ORTHO05D008508 2.1e-119 433.0 304 69.7
Glyma.06G323800 Glycine max HOM05D006784 ORTHO05D008508 4.8e-119 431.8 292 71.6
MELO3C022124.2 Cucumis melo HOM05D006784 ORTHO05D008508 8.1e-119 431.0 334 66.5
EL10Ac1g01284 Beta vulgaris HOM05D006784 ORTHO05D008508 2.0e-117 426.4 293 68.9
Sc23g0000020 Simmondsia chinensis HOM05D006784 ORTHO05D008508 2.6e-117 426.0 286 69.6
Nitab4.5_0000079g0180 Nicotiana tabacum HOM05D006784 ORTHO05D008508 9.9e-117 424.1 379 60.7
Lsat_1_v5_gn_4_133060 Lactuca sativa HOM05D006784 ORTHO05D008508 1.3e-116 423.7 314 67.8
Lj7A416T40 Lonicera japonica HOM05D006784 ORTHO05D008508 4.9e-116 421.8 288 74.0
Phvul.005G002500 Phaseolus vulgaris HOM05D006784 ORTHO05D008508 1.4e-115 420.2 291 67.7
CAN.G567.5 Capsicum annuum HOM05D006784 ORTHO05D008508 1.7e-113 413.3 266 74.8
Thhalv10019786m.g Eutrema salsugineum HOM05D006784 ORTHO05D008508 1.1e-112 410.6 326 62.3
FAN24G3159 Fragaria x ananassa HOM05D006784 ORTHO05D008508 1.1e-112 410.6 275 73.1
CARHR064620 Cardamine hirsuta HOM05D006784 ORTHO05D008508 2.5e-112 409.5 322 63.0
VMungo1080G0261 Vigna mungo HOM05D001255 ORTHO05D001246 3.3e-112 409.1 291 65.6
vmacro00953 Vaccinium macrocarpon HOM05D006784 ORTHO05D008508 2.8e-111 406.0 316 68.0
ATR1089G080 Amborella trichopoda HOM05D006784 ORTHO05D008508 1.4e-110 403.7 303 65.0
Aa31LG4G9210 Aethionema arabicum HOM05D006784 ORTHO05D008508 3.1e-110 402.5 320 62.8
AL2G31000 Arabidopsis lyrata HOM05D006784 ORTHO05D008508 6.9e-110 401.4 326 61.3
Hund26939 Selenicereus undatus HOM05D006784 ORTHO05D008508 1.2e-109 400.6 326 60.4
Sp5g26500 Schrenkiella parvula HOM05D006784 ORTHO05D008508 3.4e-109 399.1 319 60.5
BraA07t31326Z Brassica rapa HOM05D006784 ORTHO05D008508 9.9e-109 397.5 325 60.3
Carub.0002s1820 Capsella rubella HOM05D006784 ORTHO05D008508 1.1e-107 394.0 319 60.8
A07p37620 Brassica napus HOM05D006784 ORTHO05D008508 1.9e-107 393.3 321 61.1
BcaB03g14890 Brassica carinata HOM05D006784 ORTHO05D008508 2.4e-107 392.9 326 59.8
AT1G71340 Arabidopsis thaliana HOM05D006784 ORTHO05D008508 5.4e-107 391.7 297 63.6
THA.LOC104809757 Tarenaya hassleriana HOM05D006784 ORTHO05D008508 9.3e-107 391.0 330 60.0
AUR62038543 Chenopodium quinoa HOM05D006784 ORTHO05D008508 1.8e-105 386.7 295 65.1
Lj3g0009982 Lotus japonicus HOM05D006784 ORTHO05D008508 8.7e-105 384.4 316 59.8
BolC6t39596H Brassica oleracea HOM05D006784 ORTHO05D008508 1.3e-103 380.6 320 59.7
C06p45390 Brassica napus HOM05D006784 ORTHO05D008508 2.8e-103 379.4 320 59.4
Gohir.A05G248533 Gossypium hirsutum HOM05D006784 ORTHO05D008508 6.2e-103 378.3 246 74.4
TWI12G0477 Tripterygium wilfordii HOM05D006784 ORTHO05D008508 1.4e-102 377.1 278 69.1
AUR62013392 Chenopodium quinoa HOM05D006784 ORTHO05D008508 1.8e-102 376.7 294 64.3
BcaC08g46565 Brassica carinata HOM05D006784 ORTHO05D008508 2.4e-102 376.3 320 59.4
unitig_46.g17979 Utricularia gibba HOM05D006784 ORTHO05D008508 2.6e-101 372.9 295 62.0
HPP92_019449 Vanilla planifolia HOM05D006784 ORTHO05D008508 4.5e-101 372.1 306 60.1
Nitab4.5_0001489g0040 Nicotiana tabacum HOM05D006784 ORTHO05D008508 1.4e-99 367.1 325 62.2
Duzib177G0427 Durio zibethinus HOM05D006784 ORTHO05D008508 7.1e-99 364.8 324 59.3
SEGI_09486 Sequoiadendron giganteum HOM05D006784 ORTHO05D008508 9.3e-99 364.4 296 58.1
PGR119G1188 Punica granatum HOM05D006784 ORTHO05D008508 9.0e-94 347.8 324 54.6
CiPaw.03G012700 Carya illinoinensis HOM05D006784 ORTHO05D008508 6.5e-92 341.7 203 82.8
SGA_v2.0_scaffold118G32637 Striga asiatica HOM05D006784 ORTHO05D008508 7.7e-85 318.2 346 55.5
Aqoxy5G01860 Aquilegia oxysepala HOM05D006784 ORTHO05D008508 1.0e-84 317.8 206 72.8
Prupe.8G003500 Prunus persica HOM05D006784 ORTHO05D008508 1.4e-83 313.9 214 72.0
Solyc11g045040.2 Solanum lycopersicum HOM05D006784 ORTHO05D008508 1.4e-81 307.4 204 73.5
Psat5g232280 Pisum sativum HOM05D006784 ORTHO05D008508 5.7e-80 302.0 209 69.4
Cpa.g.sc142.7 Carica papaya HOM05D006784 ORTHO05D008508 1.1e-78 297.7 270 59.3
Ca_13985_v3 Cicer arietinum L. HOM05D006784 ORTHO05D008508 1.1e-78 297.7 204 68.6
Mapoly0041s0058 Marchantia polymorpha HOM05D006784 ORTHO05D008508 1.2e-77 294.3 324 44.4
FAN19G1248 Fragaria x ananassa HOM05D006784 ORTHO05D008508 2.0e-77 293.5 280 58.2
CDE08G1443 Ceratophyllum demersum HOM05D006784 ORTHO05D008508 2.5e-67 260.0 240 57.1
Gohir.D05G250801 Gossypium hirsutum HOM05D006784 ORTHO05D008508 1.6e-61 240.7 170 70.6
TWI12G0001 Tripterygium wilfordii HOM05D006784 ORTHO05D008508 8.0e-58 228.4 290 49.0
AagrBONN_evm.TU.Sc2ySwM_344.2721 Anthoceros agrestis HOM05D006784 ORTHO05D008508 7.5e-56 221.9 328 39.3
Ah.05g170450 Amaranthus hybridus HOM05D006784 ORTHO05D008508 3.7e-55 219.5 290 44.1
Haze_14004 Corylus avellana HOM05D006784 ORTHO05D008508 1.1e-54 218.0 329 44.1
Peaxi162Scf00078g01023 Petunia axillaris HOM05D006784 ORTHO05D008508 4.2e-51 206.1 169 63.9
COL.COLO4_25079 Corchorus olitorius HOM05D006784 ORTHO05D008508 1.5e-48 197.6 121 76.9
Zm00001eb167850 Zea mays HOM05D006784 ORTHO05D008508 3.4e-48 196.4 210 46.7
Hma1.2p1_0238F.1_g099740 Hydrangea macrophylla HOM05D006784 ORTHO05D008508 4.4e-48 196.1 110 88.2
HPP92_019452 Vanilla planifolia HOM05D006784 ORTHO05D008508 5.7e-40 169.1 125 64.0
FAN20G3191 Fragaria x ananassa HOM05D006784 ORTHO05D008508 2.0e-37 160.6 121 69.4
PGSC0003DMG401006664 Solanum tuberosum HOM05D006784 ORTHO05D008508 3.5e-37 159.8 120 68.3
Cre02.g115750 Chlamydomonas reinhardtii HOM05D006784 ORTHO05D008508 5.0e-36 156.0 295 32.9
Peaxi162Scf00078g01017 Petunia axillaris HOM05D006784 ORTHO05D008508 8.6e-36 155.2 95 77.9
PGSC0003DMG402006664 Solanum tuberosum HOM05D006784 ORTHO05D008508 2.0e-32 144.1 90 76.7
FvH4_2g04920 Fragaria vesca HOM05D006784 ORTHO05D008508 7.0e-30 135.6 178 47.2
Os11g0236000 Oryza sativa ssp. japonica HOM05D006784 ORTHO05D008508 8.6e-28 128.6 80 63.8
Gorai.005G166200 Gossypium raimondii HOM05D006784 ORTHO05D008508 1.9e-27 127.5 89 71.9
Gohir.D08G237350 Gossypium hirsutum HOM05D006784 ORTHO05D008508 3.3e-27 126.7 89 71.9
MD05G1006200 Malus domestica HOM05D006784 ORTHO05D008508 4.0e-25 119.8 82 69.5
CBR_g18896 Chara braunii HOM05D006784 ORTHO05D008508 2.2e-23 114.0 155 35.5
MCO03G046 Micromonas commoda HOM05D006784 ORTHO05D008508 1.2e-21 108.2 287 25.8
QL09p001297 Quercus lobata HOM05D006784 ORTHO05D008508 1.0e-20 105.1 91 58.2
Atru.chr7.394 Acer truncatum HOM05D006784 ORTHO05D008508 5.2e-17 92.8 65 64.6
FAN20G2921 Fragaria x ananassa HOM05D006784 ORTHO05D008508 4.1e-14 83.2 152 38.2
FAN20G2925 Fragaria x ananassa HOM05D006784 ORTHO05D008508 4.1e-14 83.2 152 38.2
FAN24G0543 Fragaria x ananassa HOM05D006784 ORTHO05D008508 2.1e-13 80.9 152 37.5
Pp3s30_470 Physcomitrium patens HOM05D000306 ORTHO05D317356 1.1e-11 75.1 216 27.8
FvH4_2g01030 Fragaria vesca HOM05D006784 ORTHO05D005195 3.3e-11 73.6 135 37.8
Gorai.004G102800 Gossypium raimondii HOM05D006784 ORTHO05D008508 2.8e-10 70.5 42 81.0
FAN20G2451 Fragaria x ananassa HOM05D009889 ORTHO05D003215 9.9e-08 62.0 43 72.1
MBI14_g30460_MAGBIO Magnolia biondii HOM05D006784 ORTHO05D014525 2.4e-06 57.4 38 71.1


User provided reference genes

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