Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv08722 Davidia involucrata HOM05D003996 ORTHO05D004665 0.0e+00 1231.9 621 100.0
Dinv39747 Davidia involucrata HOM05D003996 ORTHO05D004665 2.0e-291 1005.4 620 82.7
Hma1.2p1_0177F.1_g078040 Hydrangea macrophylla HOM05D003996 ORTHO05D004665 1.7e-263 912.5 625 75.0
Rhsim04G0050600 Rhododendron simsii HOM05D003996 ORTHO05D004665 3.7e-250 868.2 601 73.0
Hma1.2p1_2319F.1_g319820 Hydrangea macrophylla HOM05D003996 ORTHO05D004665 6.2e-245 850.9 621 71.5
Sabra14G0120200 Salix brachista HOM05D003996 ORTHO05D004665 5.8e-243 844.3 619 70.6
vmacro09358 Vaccinium macrocarpon HOM05D003996 ORTHO05D004665 8.6e-239 830.5 621 68.8
Duzib138G0037 Durio zibethinus HOM05D003996 ORTHO05D004665 7.3e-238 827.4 622 69.3
Potri.014G158200 Populus trichocarpa HOM05D003996 ORTHO05D004665 1.1e-236 823.5 622 69.0
Ciclev10014490m.g Citrus clementina HOM05D003996 ORTHO05D004665 6.8e-236 820.8 619 68.7
Gorai.001G196200 Gossypium raimondii HOM05D003996 ORTHO05D004665 1.2e-235 820.1 620 69.0
TWI75G1163 Tripterygium wilfordii HOM05D003996 ORTHO05D004665 2.6e-235 818.9 621 68.8
Oeu046908.1 Olea europaea HOM05D003996 ORTHO05D004665 1.9e-233 812.8 611 67.4
Thecc.01G181600 Theobroma cacao HOM05D003996 ORTHO05D004665 1.6e-232 809.7 623 68.4
Actinidia10801 Actinidia chinensis HOM05D003996 ORTHO05D004665 3.9e-231 805.1 558 74.2
Atru.chr6.3252 Acer truncatum HOM05D003996 ORTHO05D004665 6.6e-231 804.3 621 67.1
TWI36G0149 Tripterygium wilfordii HOM05D003996 ORTHO05D004665 1.1e-230 803.5 621 67.1
Potri.002G224900 Populus trichocarpa HOM05D003996 ORTHO05D004665 1.5e-230 803.1 622 67.5
QL08p030755 Quercus lobata HOM05D003996 ORTHO05D004665 2.5e-230 802.4 620 67.6
GSVIVG01030501001 Vitis vinifera HOM05D003996 ORTHO05D004665 8.1e-229 797.3 620 66.9
MBI16_g26185_MAGBIO Magnolia biondii HOM05D003996 ORTHO05D004665 2.6e-227 792.3 625 67.0
CANSAT64G2545 Cannabis sativa HOM05D003996 ORTHO05D004665 1.3e-226 790.0 620 66.5
Ca_16283_v3 Cicer arietinum L. HOM05D003996 ORTHO05D004665 3.5e-224 781.9 621 65.7
Gohir.A07G168800 Gossypium hirsutum HOM05D003996 ORTHO05D004665 3.5e-224 781.9 620 66.3
Gohir.D07G175200 Gossypium hirsutum HOM05D003996 ORTHO05D004665 4.6e-224 781.6 620 66.8
Nn1g07292 Nelumbo nucifera HOM05D003996 ORTHO05D004665 2.3e-223 779.2 604 65.7
Migut.H01245 Erythranthe guttata HOM05D003996 ORTHO05D004665 1.1e-222 776.9 618 64.4
Manes.12G069800 Manihot esculenta HOM05D003996 ORTHO05D004665 5.6e-222 774.6 619 65.1
MD09G1113700 Malus domestica HOM05D003996 ORTHO05D004665 1.6e-221 773.1 687 61.7
Prupe.3G210900 Prunus persica HOM05D003996 ORTHO05D004665 1.6e-221 773.1 719 59.7
MSTRG.14132 Avicennia marina HOM05D003996 ORTHO05D004665 4.0e-220 768.5 619 64.6
Aqoxy1G02929 Aquilegia oxysepala HOM05D003996 ORTHO05D004665 1.5e-219 766.5 604 65.6
Haze_12770 Corylus avellana HOM05D003996 ORTHO05D004665 3.4e-219 765.4 557 70.7
CSS0033567 Camellia sinensis var. sinensis HOM05D003996 ORTHO05D004665 4.5e-219 765.0 561 71.1
Solyc07g049350.3 Solanum lycopersicum HOM05D003996 ORTHO05D004665 5.8e-219 764.6 601 64.9
PGSC0003DMG400000690 Solanum tuberosum HOM05D003996 ORTHO05D004665 2.9e-218 762.3 601 64.4
Sopen07g024690 Solanum pennellii HOM05D003996 ORTHO05D004665 4.9e-218 761.5 601 64.6
HanXRQChr16g0506421 Helianthus annuus HOM05D003996 ORTHO05D004665 2.4e-217 759.2 621 61.8
Cc05_g02970 Coffea canephora HOM05D003996 ORTHO05D004665 4.2e-217 758.4 620 64.4
DCAR_012922 Daucus carota HOM05D003996 ORTHO05D004665 4.2e-217 758.4 600 65.8
Duzib211G0403 Durio zibethinus HOM05D003996 ORTHO05D004665 4.2e-217 758.4 625 65.3
Lj6g0017826 Lotus japonicus HOM05D003996 ORTHO05D004665 5.1e-215 751.5 620 63.4
Hund15359 Selenicereus undatus HOM05D003996 ORTHO05D004665 3.3e-214 748.8 629 62.6
Thhalv10016338m.g Eutrema salsugineum HOM05D003996 ORTHO05D004665 2.8e-213 745.7 623 61.5
EL10Ac6g13970 Beta vulgaris HOM05D003996 ORTHO05D004665 6.2e-213 744.6 627 62.2
Lj1C780G17 Lonicera japonica HOM05D003996 ORTHO05D004665 1.5e-211 740.0 558 69.5
Nitab4.5_0008863g0010 Nicotiana tabacum HOM05D003996 ORTHO05D004665 2.6e-211 739.2 629 63.0
THA.LOC104801005 Tarenaya hassleriana HOM05D003996 ORTHO05D004665 5.8e-211 738.0 623 59.9
Eucgr.K00757 Eucalyptus grandis HOM05D003996 ORTHO05D004665 9.9e-211 737.3 620 62.1
PSO210G1396 Papaver somniferum HOM05D003996 ORTHO05D004665 1.3e-210 736.9 616 62.3
AUR62032475 Chenopodium quinoa HOM05D003996 ORTHO05D004665 1.1e-209 733.8 616 62.2
Lsat_1_v5_gn_7_95060 Lactuca sativa HOM05D003996 ORTHO05D004665 2.5e-209 732.6 605 61.3
PSO832G2142 Papaver somniferum HOM05D003996 ORTHO05D004665 2.5e-209 732.6 616 61.9
THA.LOC104826134 Tarenaya hassleriana HOM05D003996 ORTHO05D004665 3.2e-209 732.3 622 59.8
FAN02G1294 Fragaria x ananassa HOM05D003996 ORTHO05D004665 4.2e-209 731.9 669 58.6
CAN.G1493.1 Capsicum annuum HOM05D003996 ORTHO05D004665 9.3e-209 730.7 582 64.1
FAN05G2256 Fragaria x ananassa HOM05D003996 ORTHO05D004665 1.2e-208 730.3 669 58.7
Peaxi162Scf00921g00252 Petunia axillaris HOM05D003996 ORTHO05D004665 1.2e-208 730.3 582 63.9
Oeu010926.4 Olea europaea HOM05D003996 ORTHO05D004665 4.6e-208 728.4 588 66.2
RcHm_v2.0_Chr2g0158131 Rosa chinensis HOM05D003996 ORTHO05D004665 4.6e-208 728.4 651 60.2
TPR.G29036 Trifolium pratense HOM05D003996 ORTHO05D004665 4.6e-208 728.4 621 61.7
Manes.13G066300 Manihot esculenta HOM05D003996 ORTHO05D004665 1.0e-207 727.2 557 66.1
FAN09G4790 Fragaria x ananassa HOM05D003996 ORTHO05D004665 1.8e-207 726.5 667 58.8
ClCG02G018060 Citrullus lanatus HOM05D003996 ORTHO05D004665 1.9e-206 723.0 628 60.2
Sp4g15330 Schrenkiella parvula HOM05D003996 ORTHO05D004665 2.5e-206 722.6 622 60.1
AL4G28490 Arabidopsis lyrata HOM05D003996 ORTHO05D004665 7.4e-206 721.1 633 58.8
Gorai.001G095400 Gossypium raimondii HOM05D003996 ORTHO05D004665 9.6e-206 720.7 622 62.1
Gohir.D07G089000 Gossypium hirsutum HOM05D003996 ORTHO05D004665 1.3e-205 720.3 622 62.1
TAR626G1560 Trochodendron aralioides HOM05D003996 ORTHO05D004665 2.1e-205 719.5 601 65.7
MELO3C019738.2 Cucumis melo HOM05D003996 ORTHO05D004665 4.8e-205 718.4 631 60.7
arahy.Tifrunner.gnm1.ann1.LM4IV6 Arachis hypogaea HOM05D003996 ORTHO05D004665 1.8e-204 716.5 619 59.9
CsaV3_6G015350 Cucumis sativus L. HOM05D003996 ORTHO05D004665 4.0e-204 715.3 629 59.9
Medtr3g080400 Medicago truncatula HOM05D003996 ORTHO05D004665 4.0e-204 715.3 623 61.5
FAN14G1081 Fragaria x ananassa HOM05D003996 ORTHO05D004665 5.3e-204 714.9 659 58.4
Nn1g03381 Nelumbo nucifera HOM05D003996 ORTHO05D004665 5.3e-204 714.9 619 61.1
Lalb_Chr18g0049761 Lupinus albus HOM05D003996 ORTHO05D004665 6.9e-204 714.5 622 62.7
Nitab4.5_0000482g0250 Nicotiana tabacum HOM05D003996 ORTHO05D004665 6.9e-204 714.5 609 62.4
DCAR_021140 Daucus carota HOM05D003996 ORTHO05D004665 9.0e-204 714.1 650 58.9
PSO541G1393 Papaver somniferum HOM05D003996 ORTHO05D004665 1.2e-203 713.8 626 60.7
FvH4_6g42290 Fragaria vesca HOM05D003996 ORTHO05D004665 2.6e-203 712.6 660 58.3
MD17G1103800 Malus domestica HOM05D003996 ORTHO05D004665 4.5e-203 711.8 679 58.6
CARHR126920 Cardamine hirsuta HOM05D003996 ORTHO05D004665 7.6e-203 711.1 630 58.7
PSO675G0796 Papaver somniferum HOM05D003996 ORTHO05D004665 7.6e-203 711.1 628 60.8
PGR142G3363 Punica granatum HOM05D003996 ORTHO05D004665 3.8e-202 708.8 620 60.3
SGA_v2.0_scaffold159G37554 Striga asiatica HOM05D003996 ORTHO05D004665 5.5e-201 704.9 587 62.9
AT2G32970 Arabidopsis thaliana HOM05D003996 ORTHO05D004665 7.1e-201 704.5 633 58.3
BcaC01g05877 Brassica carinata HOM05D003996 ORTHO05D004665 1.3e-199 700.3 623 59.4
BolC3t14538H Brassica oleracea HOM05D003996 ORTHO05D004665 1.3e-199 700.3 622 58.8
C03p21510 Brassica napus HOM05D003996 ORTHO05D004665 3.0e-199 699.1 623 59.2
Phvul.006G012800 Phaseolus vulgaris HOM05D003996 ORTHO05D004665 6.7e-199 698.0 630 59.8
A03p18420 Brassica napus HOM05D003996 ORTHO05D004665 1.9e-198 696.4 624 59.1
Sed0004670 Sechium edule HOM05D003996 ORTHO05D004665 2.2e-197 693.0 622 58.7
Ah.03g136730 Amaranthus hybridus HOM05D003996 ORTHO05D004665 3.7e-197 692.2 590 62.2
ECA240G4712 Erigeron canadensis HOM05D003996 ORTHO05D004665 4.8e-197 691.8 627 60.9
VMungo0540G1114 Vigna mungo HOM05D003996 ORTHO05D004665 4.8e-197 691.8 616 60.4
ECA234G3864 Erigeron canadensis HOM05D003996 ORTHO05D004665 6.3e-197 691.4 602 59.0
Lalb_Chr15g0080851 Lupinus albus HOM05D003996 ORTHO05D004665 8.2e-197 691.0 621 60.4
ECA236G3366 Erigeron canadensis HOM05D003996 ORTHO05D004665 7.7e-195 684.5 607 59.8
Gohir.A07G082500 Gossypium hirsutum HOM05D003996 ORTHO05D004665 7.7e-195 684.5 622 60.5
AUR62040130 Chenopodium quinoa HOM05D003996 ORTHO05D004665 2.2e-194 682.9 595 60.5
Aa31LG5G4630 Aethionema arabicum HOM05D003996 ORTHO05D004665 6.5e-194 681.4 622 56.6
Sabra02G0172000 Salix brachista HOM05D003996 ORTHO05D004665 6.1e-192 674.9 650 57.4
Glyma.20G056800 Glycine max HOM05D003996 ORTHO05D004665 3.9e-191 672.2 645 58.3
Carub.0004s1441 Capsella rubella HOM05D003996 ORTHO05D004665 5.1e-191 671.8 631 56.1
BcaB01g03955 Brassica carinata HOM05D003996 ORTHO05D004665 3.3e-190 669.1 625 56.2
HanXRQChr10g0310161 Helianthus annuus HOM05D003996 ORTHO05D004665 1.7e-189 666.8 621 58.9
Psat5g111680 Pisum sativum HOM05D003996 ORTHO05D004665 2.2e-189 666.4 620 58.9
SalBow7G2067 Salvia bowleyana HOM05D003996 ORTHO05D004665 8.2e-189 664.5 597 58.0
Migut.M00422 Erythranthe guttata HOM05D003996 ORTHO05D004665 6.7e-183 644.8 616 56.0
Lj8A129T88 Lonicera japonica HOM05D003996 ORTHO05D004665 2.0e-182 643.3 618 58.6
A05p12660 Brassica napus HOM05D003996 ORTHO05D004665 3.7e-181 639.0 620 55.6
BraA05t20204Z Brassica rapa HOM05D003996 ORTHO05D004665 1.3e-178 630.6 622 55.3
SGA_v2.0_scaffold70G23382 Striga asiatica HOM05D003996 ORTHO05D004665 2.2e-178 629.8 597 57.3
C04p16550 Brassica napus HOM05D003996 ORTHO05D004665 5.5e-177 625.2 624 54.8
BcaC02g11363 Brassica carinata HOM05D003996 ORTHO05D004665 7.2e-177 624.8 624 54.8
Lsat_1_v5_gn_5_124380 Lactuca sativa HOM05D003996 ORTHO05D004665 2.2e-173 613.2 621 54.3
BolC4t23207H Brassica oleracea HOM05D003996 ORTHO05D004665 1.1e-172 610.9 631 53.7
SHI10040 Sapria himalayana HOM05D003996 ORTHO05D000023 1.6e-171 607.1 626 53.8
HanXRQChr10g0306531 Helianthus annuus HOM05D003996 ORTHO05D004665 3.5e-171 605.9 609 54.0
Lsat_1_v5_gn_9_105800 Lactuca sativa HOM05D003996 ORTHO05D004665 5.9e-171 605.1 610 55.4
arahy.Tifrunner.gnm1.ann1.ZWYX82 Arachis hypogaea HOM05D003996 ORTHO05D004665 2.2e-170 603.2 604 55.0
Zm00001eb256350 Zea mays HOM05D003996 ORTHO05D004665 3.0e-167 592.8 625 52.0
BraA03t11105Z Brassica rapa HOM05D003996 ORTHO05D004665 1.1e-164 584.3 602 53.2
Glyma.13G026700 Glycine max HOM05D003996 ORTHO05D004665 1.4e-164 583.9 467 66.8
Sed0016081 Sechium edule HOM05D003996 ORTHO05D004665 4.5e-163 578.9 568 56.5
HPP92_010852 Vanilla planifolia HOM05D003996 ORTHO05D004665 1.3e-162 577.4 623 51.5
CiPaw.04G110600 Carya illinoinensis HOM05D003996 ORTHO05D004665 4.2e-161 572.4 444 67.6
DCAR_023146 Daucus carota HOM05D003996 ORTHO05D004665 2.9e-154 549.7 647 49.8
CDE07G0144 Ceratophyllum demersum HOM05D003996 ORTHO05D004665 3.8e-154 549.3 647 49.9
Os02g0771800 Oryza sativa ssp. japonica HOM05D003996 ORTHO05D004665 1.6e-152 543.9 620 48.4
Sc06g0009640 Simmondsia chinensis HOM05D003996 ORTHO05D004665 1.4e-148 530.8 444 62.2
BcaNung06410 Brassica carinata HOM05D003996 ORTHO05D004665 8.6e-138 495.0 589 49.1
unitig_26.g9924 Utricularia gibba HOM05D003996 ORTHO05D004665 9.5e-129 464.9 469 53.9
SEGI_14118 Sequoiadendron giganteum HOM05D003996 ORTHO05D004665 4.0e-127 459.5 702 41.7
BcaB02g10511 Brassica carinata HOM05D003996 ORTHO05D004665 1.2e-123 448.0 428 55.6
COL.COLO4_21871 Corchorus olitorius HOM05D003996 ORTHO05D004665 6.8e-119 432.2 356 63.5
CiPaw.03G155400 Carya illinoinensis HOM05D003996 ORTHO05D004665 9.3e-116 421.8 334 66.5
Sc05g0002040 Simmondsia chinensis HOM05D003996 ORTHO05D004665 2.6e-110 403.7 615 40.2
CANSAT01G0074 Cannabis sativa HOM05D003996 ORTHO05D004665 1.3e-106 391.3 612 41.0
AUR62001107 Chenopodium quinoa HOM05D003996 ORTHO05D004665 1.3e-106 391.3 618 39.8
AUR62008931 Chenopodium quinoa HOM05D003996 ORTHO05D004665 1.6e-104 384.4 638 39.5
Duzib133G0500 Durio zibethinus HOM05D003996 ORTHO05D004665 1.1e-100 371.7 611 39.3
EL10Ac7g17863 Beta vulgaris HOM05D003996 ORTHO05D004665 4.2e-100 369.8 608 39.6
Hund18404 Selenicereus undatus HOM05D003996 ORTHO05D004665 5.5e-92 342.8 621 39.8
GSVIVG01003286001 Vitis vinifera HOM05D003996 ORTHO05D004665 9.3e-92 342.0 600 36.8
CANSAT01G3237 Cannabis sativa HOM05D003996 ORTHO05D004665 9.6e-89 332.0 494 41.9
Pp3c17_9940 Physcomitrium patens HOM05D003996 ORTHO05D004665 1.8e-87 327.8 711 35.0
Pp3c9_1750 Physcomitrium patens HOM05D003996 ORTHO05D004665 2.4e-87 327.4 719 33.5
Cpa.g.sc132.19 Carica papaya HOM05D003996 ORTHO05D004665 5.8e-86 322.8 302 59.6
Mapoly0071s0059 Marchantia polymorpha HOM05D003996 ORTHO05D004665 5.8e-86 322.8 772 32.5
AagrBONN_evm.TU.Sc2ySwM_368.1061 Anthoceros agrestis HOM05D003996 ORTHO05D004665 7.9e-83 312.4 742 32.6
COL.COLO4_21870 Corchorus olitorius HOM05D003996 ORTHO05D004665 2.3e-82 310.8 214 73.4
SMO361G0133 Selaginella moellendorffii HOM05D003996 ORTHO05D004665 2.3e-82 310.8 618 35.6
CiPaw.03G155500 Carya illinoinensis HOM05D003996 ORTHO05D004665 2.5e-81 307.4 218 74.3
Manes.13G046600 Manihot esculenta HOM05D003996 ORTHO05D004665 1.0e-77 295.4 483 39.5
Zm00001eb297890 Zea mays HOM05D003996 ORTHO05D004665 1.1e-76 292.0 569 36.4
Ah.08g214450 Amaranthus hybridus HOM05D003996 ORTHO05D004665 1.4e-76 291.6 523 38.0
HPP92_011782 Vanilla planifolia HOM05D003996 ORTHO05D004665 2.9e-69 267.3 343 43.4
Hund05567 Selenicereus undatus HOM05D003996 ORTHO05D004665 1.0e-61 242.3 463 33.5
CBR_g29855 Chara braunii HOM05D003996 ORTHO05D004665 1.7e-48 198.4 313 38.7
Actinidia03596 Actinidia chinensis HOM05D003996 ORTHO05D004665 1.3e-45 188.7 276 41.7
Actinidia03595 Actinidia chinensis HOM05D003996 ORTHO05D004665 3.0e-42 177.6 109 80.7
Actinidia03594 Actinidia chinensis HOM05D003996 ORTHO05D004665 9.5e-28 129.4 92 71.7
Thecc.01G223400 Theobroma cacao HOM05D003996 ORTHO05D004665 2.1e-27 128.3 191 40.3
Hund15378 Selenicereus undatus HOM05D003996 ORTHO05D004665 2.0e-25 121.7 109 63.3
CiPaw.04G110700 Carya illinoinensis HOM05D003996 ORTHO05D004665 9.2e-23 112.8 66 83.3
C09p40870 Brassica napus HOM05D003996 ORTHO05D004665 1.2e-19 102.4 70 71.4
MCO15G069 Micromonas commoda HOM05D003996 ORTHO05D004665 6.0e-14 83.6 170 34.1
Cre12.g513852 Chlamydomonas reinhardtii HOM05D003996 ORTHO05D004665 1.0e-13 82.8 169 36.7
unitig_26.g9925 Utricularia gibba HOM05D003996 ORTHO05D004665 2.3e-13 81.6 52 75.0
Os05g0597400 Oryza sativa ssp. japonica HOM05D003996 ORTHO05D004665 2.8e-11 74.7 54 61.1
BcaC09g50171 Brassica carinata HOM05D003996 ORTHO05D092235 1.9e-07 62.0 48 62.5


User provided reference genes

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