Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv08650 Davidia involucrata HOM05D000646 ORTHO05D009105 4.5e-118 427.9 215 100.0
TAR383G0487 Trochodendron aralioides HOM05D000646 ORTHO05D009105 1.0e-45 187.6 166 63.9
GSVIVG01035858001 Vitis vinifera HOM05D000646 ORTHO05D009105 3.7e-40 169.1 160 60.6
Nn8g39481 Nelumbo nucifera HOM05D000646 ORTHO05D009105 6.6e-37 158.3 164 54.3
Actinidia14603 Actinidia chinensis HOM05D000646 ORTHO05D009105 1.9e-36 156.8 158 55.7
CSS0034392 Camellia sinensis var. sinensis HOM05D000646 ORTHO05D009105 6.2e-35 151.8 136 62.5
Thecc.09G024900 Theobroma cacao HOM05D000646 ORTHO05D009105 4.0e-34 149.1 141 60.3
Duzib187G1113 Durio zibethinus HOM05D000646 ORTHO05D009105 8.9e-34 147.9 141 58.2
CiPaw.07G223200 Carya illinoinensis HOM05D000646 ORTHO05D009105 2.6e-33 146.4 153 57.5
Atru.chr7.2425 Acer truncatum HOM05D000646 ORTHO05D009105 7.6e-33 144.8 140 56.4
PGSC0003DMG400032777 Solanum tuberosum HOM05D000646 ORTHO05D009105 1.7e-32 143.7 140 54.3
Rhsim07G0158200 Rhododendron simsii HOM05D000646 ORTHO05D009105 3.8e-32 142.5 163 52.1
Sopen08g009450 Solanum pennellii HOM05D000646 ORTHO05D009105 8.4e-32 141.4 145 55.2
Gorai.010G115200 Gossypium raimondii HOM05D000646 ORTHO05D009105 1.4e-31 140.6 149 53.7
Solyc08g059760.3 Solanum lycopersicum HOM05D000646 ORTHO05D009105 1.4e-31 140.6 140 53.6
EL10Ac2g04229 Beta vulgaris HOM05D000646 ORTHO05D009105 1.9e-31 140.2 182 51.1
Manes.16G121900 Manihot esculenta HOM05D000646 ORTHO05D009105 3.2e-31 139.4 155 52.9
Gohir.A06G098220 Gossypium hirsutum HOM05D000646 ORTHO05D009105 7.1e-31 138.3 143 56.6
Glyma.06G068200 Glycine max HOM05D000646 ORTHO05D009105 9.2e-31 137.9 155 53.5
Phvul.009G093000 Phaseolus vulgaris HOM05D000646 ORTHO05D009105 9.2e-31 137.9 141 56.0
Lsat_1_v5_gn_6_21420 Lactuca sativa HOM05D000646 ORTHO05D009105 1.2e-30 137.5 161 49.1
Nitab4.5_0000209g0170 Nicotiana tabacum HOM05D000646 ORTHO05D009105 1.2e-30 137.5 140 57.1
Aqoxy7G03681 Aquilegia oxysepala HOM05D000646 ORTHO05D009105 1.6e-30 137.1 159 51.6
VMungo1309G2095 Vigna mungo HOM05D000646 ORTHO05D009105 1.6e-30 137.1 141 56.7
ECA233G0229 Erigeron canadensis HOM05D000038 ORTHO05D000423 2.1e-30 136.7 159 50.9
HanXRQChr13g0402951 Helianthus annuus HOM05D000646 ORTHO05D009105 2.7e-30 136.3 157 51.6
Ciclev10008868m.g Citrus clementina HOM05D000646 ORTHO05D009105 6.0e-30 135.2 140 55.0
Migut.A00043 Erythranthe guttata HOM05D000646 ORTHO05D009105 1.0e-29 134.4 152 50.0
FAN24G2162 Fragaria x ananassa HOM05D000646 ORTHO05D009105 2.3e-29 133.3 175 49.7
PSO170G5186 Papaver somniferum HOM05D000646 ORTHO05D009105 3.0e-29 132.9 170 50.6
Peaxi162Scf00785g00113 Petunia axillaris HOM05D000646 ORTHO05D009105 3.0e-29 132.9 139 55.4
Potri.006G254500 Populus trichocarpa HOM05D000646 ORTHO05D009105 3.0e-29 132.9 155 52.3
Medtr3g107060 Medicago truncatula HOM05D000646 ORTHO05D009105 3.3e-28 129.4 121 58.7
Prupe.1G481000 Prunus persica HOM05D000646 ORTHO05D009105 3.3e-28 129.4 160 50.0
arahy.Tifrunner.gnm1.ann1.QIQ2JJ Arachis hypogaea HOM05D000646 ORTHO05D009105 4.3e-28 129.0 97 71.1
TPR.G3114 Trifolium pratense HOM05D000646 ORTHO05D009105 5.6e-28 128.6 143 53.1
arahy.Tifrunner.gnm1.ann1.JA8ULA Arachis hypogaea HOM05D000646 ORTHO05D009105 1.2e-27 127.5 97 70.1
PSO017G5755 Papaver somniferum HOM05D000646 ORTHO05D009105 2.1e-27 126.7 172 48.3
QL02p021720 Quercus lobata HOM05D000646 ORTHO05D009105 6.2e-27 125.2 134 55.2
CANSAT01G3003 Cannabis sativa HOM05D000646 ORTHO05D009105 8.1e-27 124.8 169 47.3
Sabra06G0198900 Salix brachista HOM05D000038 ORTHO05D000423 1.4e-26 124.0 159 50.3
SGA_v2.0_scaffold64G21930 Striga asiatica HOM05D000646 ORTHO05D009105 1.4e-26 124.0 152 46.7
CAN.G9.29 Capsicum annuum HOM05D000646 ORTHO05D009105 1.8e-26 123.6 140 52.9
Ca_15737_v3 Cicer arietinum L. HOM05D000646 ORTHO05D009105 1.8e-26 123.6 120 55.8
Lj1g0011836 Lotus japonicus HOM05D000646 ORTHO05D009105 1.8e-26 123.6 119 56.3
MD15G1125400 Malus domestica HOM05D000646 ORTHO05D009105 1.8e-26 123.6 146 52.1
TWI34G0736 Tripterygium wilfordii HOM05D000646 ORTHO05D009105 2.4e-26 123.2 175 43.4
FAN27G0875 Fragaria x ananassa HOM05D000646 ORTHO05D009105 3.1e-26 122.9 152 50.7
Gohir.D06G100300 Gossypium hirsutum HOM05D000646 ORTHO05D009105 3.1e-26 122.9 143 51.0
Psat5g028800 Pisum sativum HOM05D000646 ORTHO05D009105 5.2e-26 122.1 108 63.9
Oeu042700.2 Olea europaea HOM05D000646 ORTHO05D009105 6.9e-26 121.7 104 64.4
RcHm_v2.0_Chr6g0297961 Rosa chinensis HOM05D000646 ORTHO05D009105 6.9e-26 121.7 166 42.8
BcaNung03588 Brassica carinata HOM05D000646 ORTHO05D009105 1.5e-25 120.6 157 49.7
PGR031G0023 Punica granatum HOM05D000646 ORTHO05D009105 1.5e-25 120.6 144 56.2
Cpa.g.sc217.1 Carica papaya HOM05D000646 ORTHO05D009105 2.6e-25 119.8 138 52.9
Lalb_Chr23g0268511 Lupinus albus HOM05D000646 ORTHO05D009105 3.4e-25 119.4 111 62.2
C07p59190 Brassica napus HOM05D000646 ORTHO05D009105 4.4e-25 119.0 156 49.4
BolC7t46363H Brassica oleracea HOM05D000646 ORTHO05D009105 4.4e-25 119.0 156 49.4
Carub.0007s0826 Capsella rubella HOM05D000646 ORTHO05D009105 4.4e-25 119.0 140 49.3
Eucgr.C01740 Eucalyptus grandis HOM05D000646 ORTHO05D009105 4.4e-25 119.0 89 71.9
FvH4_2g29080 Fragaria vesca HOM05D000646 ORTHO05D009105 4.4e-25 119.0 141 50.4
FAN15G2271 Fragaria x ananassa HOM05D000646 ORTHO05D009105 4.4e-25 119.0 165 46.1
Nitab4.5_0010580g0030 Nicotiana tabacum HOM05D000646 ORTHO05D009105 4.4e-25 119.0 167 43.1
Sc09g0008260 Simmondsia chinensis HOM05D000646 ORTHO05D009105 5.8e-25 118.6 115 60.9
ATR1120G042 Amborella trichopoda HOM05D000646 ORTHO05D009105 1.3e-24 117.5 131 49.6
CDE04G2247 Ceratophyllum demersum HOM05D000646 ORTHO05D009105 1.7e-24 117.1 163 46.6
Lj7A723T40 Lonicera japonica HOM05D000646 ORTHO05D009105 1.7e-24 117.1 97 66.0
Sp7g30080 Schrenkiella parvula HOM05D000646 ORTHO05D009105 1.7e-24 117.1 142 49.3
ClCG08G013360 Citrullus lanatus HOM05D000646 ORTHO05D009105 2.9e-24 116.3 167 44.3
BcaNung03953 Brassica carinata HOM05D000646 ORTHO05D009105 4.9e-24 115.5 156 44.2
Cc08_g00640 Coffea canephora HOM05D000646 ORTHO05D009105 4.9e-24 115.5 141 51.8
AT4G32320 Arabidopsis thaliana HOM05D000646 ORTHO05D009105 8.4e-24 114.8 141 47.5
Sed0006311 Sechium edule HOM05D000646 ORTHO05D009105 8.4e-24 114.8 97 61.9
THA.LOC104803658 Tarenaya hassleriana HOM05D000646 ORTHO05D009105 8.4e-24 114.8 161 46.0
AL7G19520 Arabidopsis lyrata HOM05D000646 ORTHO05D009105 1.4e-23 114.0 157 45.2
A03p61340 Brassica napus HOM05D000646 ORTHO05D009105 1.9e-23 113.6 115 52.2
BraA03t15178Z Brassica rapa HOM05D000646 ORTHO05D009105 1.9e-23 113.6 115 52.2
MELO3C011261.2 Cucumis melo HOM05D000646 ORTHO05D009105 1.9e-23 113.6 148 46.6
CsaV3_2G032090 Cucumis sativus L. HOM05D000646 ORTHO05D009105 4.2e-23 112.5 169 43.2
Duzib150G0647 Durio zibethinus HOM05D000646 ORTHO05D009105 5.4e-23 112.1 101 56.4
Thhalv10025686m.g Eutrema salsugineum HOM05D000646 ORTHO05D009105 5.4e-23 112.1 89 61.8
Aa31LG2G18240 Aethionema arabicum HOM05D000646 ORTHO05D009105 2.7e-22 109.8 77 68.8
Hma1.2p1_0000F.1_g000020 Hydrangea macrophylla HOM05D000646 ORTHO05D009105 1.1e-20 104.4 76 71.1
SalBow4G2668 Salvia bowleyana HOM05D000646 ORTHO05D009105 3.3e-20 102.8 136 43.4
Os08g0522400 Oryza sativa ssp. japonica HOM05D000646 ORTHO05D009105 7.3e-20 101.7 91 56.0
AUR62031510 Chenopodium quinoa HOM05D000646 ORTHO05D009105 4.8e-19 99.0 144 49.3
Zm00001eb035440 Zea mays HOM05D000646 ORTHO05D009105 6.2e-19 98.6 89 53.9
AUR62012394 Chenopodium quinoa HOM05D000646 ORTHO05D009105 8.1e-19 98.2 149 48.3
Hund25808 Selenicereus undatus HOM05D000646 ORTHO05D009105 1.1e-18 97.8 154 46.8
unitig_748.g8183 Utricularia gibba HOM05D000646 ORTHO05D009105 4.0e-18 95.9 63 68.3
Hma1.2p1_0000F.1_g000030 Hydrangea macrophylla HOM05D000646 ORTHO05D009105 2.0e-17 93.6 51 86.3
vmacro05176 Vaccinium macrocarpon HOM05D000646 ORTHO05D009105 2.0e-17 93.6 72 65.3
Pp3c17_7560 Physcomitrium patens HOM05D000646 ORTHO05D009105 4.5e-17 92.4 76 60.5
Haze_21520 Corylus avellana HOM05D000646 ORTHO05D009105 6.4e-16 88.6 113 51.3
MBI04_g29345_MAGBIO Magnolia biondii HOM05D000646 ORTHO05D009105 8.4e-16 88.2 135 44.4
Mapoly0059s0017 Marchantia polymorpha HOM05D000646 ORTHO05D009105 1.4e-15 87.4 98 51.0
SMO367G0848 Selaginella moellendorffii HOM05D000646 ORTHO05D009105 7.1e-15 85.1 59 67.8
MD08G1150400 Malus domestica HOM05D000646 ORTHO05D009105 7.9e-14 81.6 51 74.5
AagrBONN_evm.TU.Sc2ySwM_368.1263 Anthoceros agrestis HOM05D000646 ORTHO05D009105 1.5e-12 77.4 72 54.2
Eucgr.C01738 Eucalyptus grandis HOM05D000646 ORTHO05D009105 5.8e-09 65.5 43 74.4
MCO07G104 Micromonas commoda HOM05D000646 ORTHO05D009105 7.6e-09 65.1 47 66.0
Cre06.g285150 Chlamydomonas reinhardtii HOM05D000646 ORTHO05D009105 3.8e-08 62.8 59 49.2
AUR62003345 Chenopodium quinoa HOM05D000646 ORTHO05D000607 7.1e-07 58.5 61 45.9
AUR62029490 Chenopodium quinoa HOM05D000646 ORTHO05D000607 7.1e-07 58.5 61 45.9
A01p02740 Brassica napus HOM05D000646 ORTHO05D000607 9.3e-07 58.2 55 50.9
BraA01t00260Z Brassica rapa HOM05D000646 ORTHO05D000607 9.3e-07 58.2 55 50.9
BcaNung00775 Brassica carinata HOM05D000646 ORTHO05D000607 1.6e-06 57.4 55 50.9
C01p03040 Brassica napus HOM05D000646 ORTHO05D000607 1.6e-06 57.4 55 50.9
BolC1t00290H Brassica oleracea HOM05D000646 ORTHO05D000607 1.6e-06 57.4 55 50.9
AUR62029491 Chenopodium quinoa HOM05D000646 ORTHO05D000607 2.1e-06 57.0 61 45.9
AUR62043592 Chenopodium quinoa HOM05D000646 ORTHO05D000607 2.1e-06 57.0 61 45.9
AT4G35970 Arabidopsis thaliana HOM05D000646 ORTHO05D000607 2.7e-06 56.6 55 49.1
Carub.0007s0426 Capsella rubella HOM05D000646 ORTHO05D000607 2.7e-06 56.6 55 49.1
EL10Ac6g15498 Beta vulgaris HOM05D000646 ORTHO05D000607 3.5e-06 56.2 61 45.9
BcaNung00776 Brassica carinata HOM05D000646 ORTHO05D000607 3.5e-06 56.2 55 49.1
Hund13395 Selenicereus undatus HOM05D000646 ORTHO05D000607 3.5e-06 56.2 61 49.2
CARHR244360 Cardamine hirsuta HOM05D000646 ORTHO05D000607 4.6e-06 55.8 75 40.0
AUR62003343 Chenopodium quinoa HOM05D000646 ORTHO05D000607 4.6e-06 55.8 61 45.9
AUR62043594 Chenopodium quinoa HOM05D000646 ORTHO05D000607 4.6e-06 55.8 61 45.9
AUR62044027 Chenopodium quinoa HOM05D000646 ORTHO05D000607 4.6e-06 55.8 61 45.9
THA.LOC104804273 Tarenaya hassleriana HOM05D000646 ORTHO05D000607 4.6e-06 55.8 55 50.9
AL7G15080 Arabidopsis lyrata HOM05D000646 ORTHO05D000607 6.0e-06 55.5 55 49.1
AL1G55734 Arabidopsis lyrata HOM05D000646 ORTHO05D031384 7.9e-06 55.1 52 48.1
EL10Ac6g15500 Beta vulgaris HOM05D000646 ORTHO05D000607 7.9e-06 55.1 54 53.7


User provided reference genes

Program Settings