Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv08526 Davidia involucrata HOM05D001343 ORTHO05D007223 0.0e+00 1312.4 799 100.0
Hma1.2p1_0300F.1_g118160 Hydrangea macrophylla HOM05D001343 ORTHO05D007223 5.6e-283 977.6 802 78.3
Actinidia17384 Actinidia chinensis HOM05D001343 ORTHO05D007223 2.5e-262 909.1 799 69.2
QL06p052741 Quercus lobata HOM05D001343 ORTHO05D007223 6.9e-249 864.4 835 68.3
CiPaw.07G004100 Carya illinoinensis HOM05D001343 ORTHO05D007223 2.2e-242 842.8 799 70.3
TAR381G1734 Trochodendron aralioides HOM05D001343 ORTHO05D007223 8.2e-242 840.9 799 69.3
Haze_03675 Corylus avellana HOM05D001343 ORTHO05D007223 2.2e-239 832.8 805 68.0
Aqoxy5G01035 Aquilegia oxysepala HOM05D001343 ORTHO05D007223 5.0e-231 805.1 799 65.6
MD15G1233300 Malus domestica HOM05D001343 ORTHO05D007223 1.5e-230 803.5 792 65.9
GSVIVG01003839001 Vitis vinifera HOM05D001343 ORTHO05D007223 1.2e-229 800.4 738 68.4
Prupe.7G179600 Prunus persica HOM05D001343 ORTHO05D007223 1.8e-225 786.6 787 67.3
Dinv40173 Davidia involucrata HOM05D001343 ORTHO05D007223 3.5e-224 782.3 512 85.7
Duzib147G0638 Durio zibethinus HOM05D001343 ORTHO05D007223 5.9e-224 781.6 799 64.2
Duzib187G0329 Durio zibethinus HOM05D001343 ORTHO05D007223 5.5e-222 775.0 802 61.0
Sabra05G0082500 Salix brachista HOM05D001343 ORTHO05D007223 9.4e-222 774.2 801 67.0
QL06p053829 Quercus lobata HOM05D001343 ORTHO05D007223 2.7e-221 772.7 801 66.5
Potri.005G099800 Populus trichocarpa HOM05D001343 ORTHO05D007223 2.6e-219 766.1 800 66.5
PSO210G1702 Papaver somniferum HOM05D001343 ORTHO05D007223 4.4e-219 765.4 771 66.4
MD02G1119300 Malus domestica HOM05D001343 ORTHO05D007223 9.8e-219 764.2 792 66.4
Atru.chr3.956 Acer truncatum HOM05D001343 ORTHO05D007223 7.0e-217 758.1 772 61.8
Actinidia22910 Actinidia chinensis HOM05D001343 ORTHO05D007223 2.0e-216 756.5 799 66.1
Lalb_Chr05g0211921 Lupinus albus HOM05D001343 ORTHO05D007223 1.0e-215 754.2 801 61.9
TWI09G1271 Tripterygium wilfordii HOM05D001343 ORTHO05D007223 5.6e-214 748.4 801 62.3
CANSAT25G0854 Cannabis sativa HOM05D001343 ORTHO05D007223 1.0e-212 744.2 744 67.9
CSS0043948 Camellia sinensis var. sinensis HOM05D001343 ORTHO05D007223 1.8e-212 743.4 789 62.7
CANSAT25G1453 Cannabis sativa HOM05D001343 ORTHO05D007223 4.0e-212 742.3 744 67.6
Gohir.A10G099100 Gossypium hirsutum HOM05D001343 ORTHO05D007223 5.2e-212 741.9 788 65.9
Sed0023593 Sechium edule HOM05D001343 ORTHO05D007223 3.4e-211 739.2 799 62.1
Thecc.01G007100 Theobroma cacao HOM05D001343 ORTHO05D007223 2.2e-210 736.5 799 64.7
FAN23G1852 Fragaria x ananassa HOM05D001343 ORTHO05D007223 1.1e-209 734.2 800 63.9
Phvul.002G114800 Phaseolus vulgaris HOM05D001343 ORTHO05D007223 4.1e-209 732.3 793 60.5
ECA238G2213 Erigeron canadensis HOM05D001343 ORTHO05D007223 9.2e-209 731.1 808 60.6
vmacro20524 Vaccinium macrocarpon HOM05D001343 ORTHO05D007223 1.1e-206 724.2 762 62.5
HanXRQChr14g0442391 Helianthus annuus HOM05D001343 ORTHO05D007223 1.0e-204 717.6 803 62.3
PSO170G3735 Papaver somniferum HOM05D001343 ORTHO05D007223 1.4e-204 717.2 761 65.8
SGA_v2.0_scaffold12G05990 Striga asiatica HOM05D001343 ORTHO05D007223 3.1e-204 716.1 799 58.7
Cpa.g.sc55.186 Carica papaya HOM05D001343 ORTHO05D007223 7.5e-203 711.4 792 63.3
FvH4_1g10521 Fragaria vesca HOM05D001343 ORTHO05D007223 1.7e-202 710.3 803 62.8
Gohir.D10G089000 Gossypium hirsutum HOM05D001343 ORTHO05D007223 2.9e-202 709.5 788 64.7
Gorai.011G097900 Gossypium raimondii HOM05D001343 ORTHO05D007223 1.4e-201 707.2 788 64.6
Hund03615 Selenicereus undatus HOM05D001343 ORTHO05D007223 2.4e-201 706.4 799 62.5
Peaxi162Scf01446g00025 Petunia axillaris HOM05D001343 ORTHO05D007223 9.2e-201 704.5 809 56.7
CsaV3_3G000380 Cucumis sativus L. HOM05D001343 ORTHO05D007223 1.2e-200 704.1 802 60.2
FAN19G1061 Fragaria x ananassa HOM05D001343 ORTHO05D007223 1.3e-199 700.7 799 62.3
ClCG10G000340 Citrullus lanatus HOM05D001343 ORTHO05D007223 3.0e-199 699.5 808 60.1
Glyma.01G159900 Glycine max HOM05D001343 ORTHO05D007223 5.0e-199 698.7 794 62.0
FAN28G2189 Fragaria x ananassa HOM05D001343 ORTHO05D007223 4.7e-197 692.2 800 61.6
MSTRG.15594 Avicennia marina HOM05D001343 ORTHO05D007223 6.2e-197 691.8 799 61.3
CAN.G890.76 Capsicum annuum HOM05D001343 ORTHO05D007223 2.0e-195 686.8 796 59.2
TPR.G25095 Trifolium pratense HOM05D001343 ORTHO05D007223 2.2e-194 683.3 807 60.2
Nitab4.5_0000702g0060 Nicotiana tabacum HOM05D001343 ORTHO05D007223 8.3e-194 681.4 797 56.2
Nn5g30956 Nelumbo nucifera HOM05D001343 ORTHO05D007223 7.8e-192 674.9 763 60.6
PGR083G0487 Punica granatum HOM05D001343 ORTHO05D007223 7.8e-192 674.9 799 60.7
COL.COLO4_22537 Corchorus olitorius HOM05D001343 ORTHO05D007223 1.5e-190 670.6 800 56.0
Manes.02G112700 Manihot esculenta HOM05D001343 ORTHO05D007223 3.3e-190 669.5 802 61.3
EL10Ac6g15468 Beta vulgaris HOM05D001343 ORTHO05D007223 3.1e-188 662.9 807 59.0
SalBow5G5069 Salvia bowleyana HOM05D001343 ORTHO05D007223 7.6e-187 658.3 853 57.2
Lsat_1_v5_gn_2_74420 Lactuca sativa HOM05D001343 ORTHO05D007223 4.9e-186 655.6 804 59.6
Ciclev10024922m.g Citrus clementina HOM05D001343 ORTHO05D007223 8.4e-186 654.8 804 55.0
Lj2g0004784 Lotus japonicus HOM05D001343 ORTHO05D007223 3.2e-185 652.9 807 59.7
THA.LOC104826465 Tarenaya hassleriana HOM05D001343 ORTHO05D007223 9.2e-185 651.4 788 59.0
arahy.Tifrunner.gnm1.ann1.AU9Y8G Arachis hypogaea HOM05D001343 ORTHO05D007223 3.4e-179 632.9 806 57.4
arahy.Tifrunner.gnm1.ann1.SLQH96 Arachis hypogaea HOM05D001343 ORTHO05D007223 3.4e-179 632.9 806 57.4
Atru.chr3.968 Acer truncatum HOM05D001343 ORTHO05D007223 2.9e-178 629.8 772 55.1
Glyma.11G084200 Glycine max HOM05D001343 ORTHO05D007223 1.2e-176 624.4 793 59.4
BcaB04g20130 Brassica carinata HOM05D001343 ORTHO05D002008 2.5e-174 616.7 757 56.7
AUR62029449 Chenopodium quinoa HOM05D001343 ORTHO05D007223 6.9e-172 608.6 800 57.9
MELO3C013733.2 Cucumis melo HOM05D001343 ORTHO05D007223 6.9e-172 608.6 809 55.4
Sc16g0001690 Simmondsia chinensis HOM05D001343 ORTHO05D007223 3.4e-171 606.3 794 57.6
AT5G66030 Arabidopsis thaliana HOM05D001343 ORTHO05D007223 7.6e-171 605.1 795 55.1
Thhalv10003686m.g Eutrema salsugineum HOM05D001343 ORTHO05D007223 2.2e-170 603.6 774 55.0
AUR62003379 Chenopodium quinoa HOM05D001343 ORTHO05D007223 1.1e-169 601.3 800 57.2
VMungo1215G1031 Vigna mungo HOM05D001343 ORTHO05D007223 1.9e-169 600.5 798 56.9
Ah.03g148390 Amaranthus hybridus HOM05D001343 ORTHO05D007223 1.6e-168 597.4 800 56.2
ATR0661G538 Amborella trichopoda HOM05D001343 ORTHO05D007223 3.9e-167 592.8 773 53.8
Eucgr.J02528 Eucalyptus grandis HOM05D001343 ORTHO05D007223 1.1e-166 591.3 794 55.5
Nitab4.5_0002967g0060 Nicotiana tabacum HOM05D001343 ORTHO05D007223 1.9e-166 590.5 796 50.8
Solyc02g082840.3 Solanum lycopersicum HOM05D001343 ORTHO05D007223 1.3e-165 587.8 796 52.3
Medtr5g023770 Medicago truncatula HOM05D001343 ORTHO05D007223 2.1e-165 587.0 768 55.5
Sopen02g027640 Solanum pennellii HOM05D001343 ORTHO05D007223 3.6e-165 586.3 796 52.0
Ca_24963_v3 Cicer arietinum L. HOM05D001343 ORTHO05D007223 1.8e-164 583.9 829 55.1
AL8G45590 Arabidopsis lyrata HOM05D001343 ORTHO05D007223 2.4e-164 583.6 782 56.0
BcaC04g23105 Brassica carinata HOM05D001343 ORTHO05D002008 6.4e-162 575.5 742 57.8
C09p12110 Brassica napus HOM05D001343 ORTHO05D002008 6.4e-162 575.5 742 57.8
A09p10220 Brassica napus HOM05D001343 ORTHO05D002008 1.9e-161 573.9 746 56.4
BraA09t36667Z Brassica rapa HOM05D001343 ORTHO05D002008 4.6e-160 569.3 753 55.9
Cc07_g11650 Coffea canephora HOM05D001343 ORTHO05D007223 6.0e-160 568.9 799 56.1
Zm00001eb104860 Zea mays HOM05D001343 ORTHO05D007223 7.9e-160 568.5 748 54.3
Carub.0008s2848 Capsella rubella HOM05D001343 ORTHO05D007223 3.0e-159 566.6 791 50.2
Migut.L00734 Erythranthe guttata HOM05D001343 ORTHO05D007223 5.1e-159 565.8 802 52.7
BolC9t54101H Brassica oleracea HOM05D001343 ORTHO05D002008 1.1e-158 564.7 749 55.9
Sp2g30660 Schrenkiella parvula HOM05D001343 ORTHO05D007223 1.5e-155 554.3 755 55.4
Lj4A232G45 Lonicera japonica HOM05D001343 ORTHO05D007223 4.2e-153 546.2 771 52.5
DCAR_011583 Daucus carota HOM05D001343 ORTHO05D007223 9.0e-148 528.5 796 54.3
Manes.01G153700 Manihot esculenta HOM05D001343 ORTHO05D007223 4.8e-141 506.1 584 58.0
Os07g0472500 Oryza sativa ssp. japonica HOM05D001343 ORTHO05D007223 4.8e-141 506.1 746 49.6
HPP92_003502 Vanilla planifolia HOM05D001343 ORTHO05D007223 1.4e-132 478.0 811 46.4
unitig_88.g27773 Utricularia gibba HOM05D001343 ORTHO05D007223 5.9e-131 472.6 805 43.0
CARHR281730 Cardamine hirsuta HOM05D001343 ORTHO05D007223 6.1e-120 436.0 418 63.6
Mapoly0179s0009 Marchantia polymorpha HOM05D001343 ORTHO05D007223 3.5e-107 393.7 752 37.9
SEGI_12448 Sequoiadendron giganteum HOM05D001343 ORTHO05D007223 3.8e-106 390.2 778 41.4
AagrBONN_evm.TU.Sc2ySwM_344.163 Anthoceros agrestis HOM05D001343 ORTHO05D007223 2.5e-97 360.9 562 43.6
RcHm_v2.0_Chr2g0097461 Rosa chinensis HOM05D001343 ORTHO05D007223 1.6e-96 358.2 554 56.0
RcHm_v2.0_Chr2g0097581 Rosa chinensis HOM05D001343 ORTHO05D007223 1.6e-91 341.7 554 54.9
Pp3c20_18210 Physcomitrium patens HOM05D001343 ORTHO05D007223 1.8e-87 328.2 778 34.2
CDE06G1375 Ceratophyllum demersum HOM05D001343 ORTHO05D007223 1.5e-86 325.1 275 66.2
CDE07G1064 Ceratophyllum demersum HOM05D001343 ORTHO05D007223 3.6e-80 303.9 255 65.9
Actinidia26548 Actinidia chinensis HOM05D001343 ORTHO05D007223 3.1e-79 300.8 209 79.9
Psat2g150520 Pisum sativum HOM05D001343 ORTHO05D007223 1.2e-72 278.9 527 52.0
RcHm_v2.0_Chr2g0097451 Rosa chinensis HOM05D001343 ORTHO05D007223 7.6e-70 269.6 190 80.5
Psat2g150480 Pisum sativum HOM05D001343 ORTHO05D007223 5.2e-63 246.9 193 72.5
Pp3c23_9770 Physcomitrium patens HOM05D001343 ORTHO05D007223 4.2e-60 237.3 774 30.2
CDE07G1287 Ceratophyllum demersum HOM05D001343 ORTHO05D007223 4.0e-55 220.7 249 53.8
Migut.L00927 Erythranthe guttata HOM05D001343 ORTHO05D007223 1.4e-52 212.2 383 53.0
Rhsim10G0198000 Rhododendron simsii HOM05D001343 ORTHO05D007223 4.2e-52 210.7 822 30.9
Migut.L00811 Erythranthe guttata HOM05D001343 ORTHO05D007223 3.0e-50 204.5 132 84.1
QL06p053793 Quercus lobata HOM05D001343 ORTHO05D007223 3.4e-46 191.0 137 83.2
RcHm_v2.0_Chr2g0097571 Rosa chinensis HOM05D001343 ORTHO05D007223 1.6e-40 172.2 123 78.9
Cpa.g.sc1414.4 Carica papaya HOM05D001343 ORTHO05D007223 2.1e-40 171.8 283 63.3
CBR_g34809 Chara braunii HOM05D000019 ORTHO05D000002 3.8e-37 161.0 366 34.7
arahy.Tifrunner.gnm1.ann1.ISY8LN Arachis hypogaea HOM05D001343 ORTHO05D007223 1.6e-35 155.6 180 53.9
arahy.Tifrunner.gnm1.ann1.9PSP05 Arachis hypogaea HOM05D001343 ORTHO05D007223 6.3e-32 143.7 166 57.8
Oeu032010.1 Olea europaea HOM05D001343 ORTHO05D007223 3.1e-31 141.4 159 53.5
Actinidia26547 Actinidia chinensis HOM05D001343 ORTHO05D007223 2.2e-29 135.2 154 54.5
Aa31LG1G14520 Aethionema arabicum HOM05D001343 ORTHO05D007223 3.6e-27 127.9 272 54.0
RcHm_v2.0_Chr6g0253501 Rosa chinensis HOM05D001343 ORTHO05D007223 4.8e-24 117.5 253 54.9
arahy.Tifrunner.gnm1.ann1.6P6C0I Arachis hypogaea HOM05D001343 ORTHO05D007223 9.4e-20 103.2 95 70.5
arahy.Tifrunner.gnm1.ann1.QS1PDB Arachis hypogaea HOM05D001343 ORTHO05D007223 2.3e-18 98.6 84 59.5
arahy.Tifrunner.gnm1.ann1.T78FCF Arachis hypogaea HOM05D001343 ORTHO05D007223 1.7e-16 92.4 79 69.6
HPP92_003508 Vanilla planifolia HOM05D001343 ORTHO05D007223 2.2e-16 92.0 56 91.1
AL472U10010 Arabidopsis lyrata HOM05D001343 ORTHO05D007223 1.8e-15 89.0 253 50.2
CDE06G1033 Ceratophyllum demersum HOM05D001343 ORTHO05D007223 2.6e-14 85.1 68 67.6
Glyma.18G186501 Glycine max HOM05D001343 ORTHO05D007223 3.4e-14 84.7 70 65.7
QL06p052753 Quercus lobata HOM05D003687 ORTHO05D007223 7.7e-14 83.6 55 80.0
CDE06G1191 Ceratophyllum demersum HOM05D001343 ORTHO05D007223 2.2e-13 82.0 105 47.6
QL08p060183 Quercus lobata HOM05D000807 ORTHO05D008987 1.1e-12 79.7 136 44.1
QL08p060543 Quercus lobata HOM05D000807 ORTHO05D008987 1.1e-12 79.7 136 44.1
Oeu020654.1 Olea europaea HOM05D001343 ORTHO05D007223 1.2e-11 76.3 46 89.1
RcHm_v2.0_Chr2g0097561 Rosa chinensis HOM05D001343 ORTHO05D007223 3.9e-10 71.2 47 83.0
ECA238G3708 Erigeron canadensis HOM05D012425 ORTHO05D014354 2.8e-08 65.1 74 51.4
QL06p052765 Quercus lobata HOM05D000009 ORTHO05D000008 6.3e-08 63.9 65 53.8
QL06p052757 Quercus lobata HOM05D003687 ORTHO05D004571 3.1e-07 61.6 66 54.5
Lsat_1_v5_gn_4_84780 Lactuca sativa HOM05D003172 ORTHO05D007223 4.1e-07 61.2 48 75.0
GSVIVG01022573001 Vitis vinifera HOM05D000504 ORTHO05D012546 4.5e-06 57.8 56 50.0
arahy.Tifrunner.gnm1.ann1.55UCKQ Arachis hypogaea HOM05D050568 ORTHO05D007223 7.7e-06 57.0 73 42.5


User provided reference genes

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