Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv08508 Davidia involucrata HOM05D001702 ORTHO05D001791 3.2e-40 167.9 82 100.0
Dinv03762 Davidia involucrata HOM05D001702 ORTHO05D001791 7.9e-15 83.6 42 92.9
Actinidia05744 Actinidia chinensis HOM05D001702 ORTHO05D001791 1.8e-14 82.4 46 82.6
Dinv00472 Davidia involucrata HOM05D001702 ORTHO05D001791 8.7e-14 80.1 42 88.1
Atru.chr2.609 Acer truncatum HOM05D001702 ORTHO05D001791 3.3e-13 78.2 42 83.3
Potri.005G043400 Populus trichocarpa HOM05D001702 ORTHO05D001791 1.3e-12 76.3 41 80.5
Cfa006507 Carpinus fangiana HOM05D001702 ORTHO05D001791 2.1e-12 75.5 42 81.0
CiPaw.07G011600 Carya illinoinensis HOM05D001702 ORTHO05D001791 2.1e-12 75.5 42 78.6
Ciclev10000874m.g Citrus clementina HOM05D001702 ORTHO05D001791 2.1e-12 75.5 42 83.3
Haze_04278 Corylus avellana HOM05D001702 ORTHO05D001791 2.1e-12 75.5 42 81.0
Rhsim07G0176900 Rhododendron simsii HOM05D001702 ORTHO05D001791 2.1e-12 75.5 42 81.0
CSS0027964 Camellia sinensis var. sinensis HOM05D001702 ORTHO05D001791 2.8e-12 75.1 42 83.3
CSS0030581 Camellia sinensis var. sinensis HOM05D001702 ORTHO05D001791 2.8e-12 75.1 42 83.3
Eucgr.B01770 Eucalyptus grandis HOM05D001702 ORTHO05D001791 4.8e-12 74.3 42 81.0
Peaxi162Scf00780g00005 Petunia axillaris HOM05D001702 ORTHO05D001791 6.2e-12 73.9 43 79.1
Nitab4.5_0013198g0010 Nicotiana tabacum HOM05D001702 ORTHO05D001791 8.2e-12 73.6 43 79.1
QL03p002761 Quercus lobata HOM05D001702 ORTHO05D001791 8.2e-12 73.6 42 83.3
GSVIVG01021977001 Vitis vinifera HOM05D001702 ORTHO05D001791 1.1e-11 73.2 42 76.2
Nitab4.5_0000327g0140 Nicotiana tabacum HOM05D001702 ORTHO05D001791 1.8e-11 72.4 47 72.3
Lj7C483G0 Lonicera japonica HOM05D001702 ORTHO05D001791 2.4e-11 72.0 42 78.6
Cc02_g32950 Coffea canephora HOM05D001702 ORTHO05D001791 3.1e-11 71.6 46 69.6
Manes.09G160900 Manihot esculenta HOM05D001702 ORTHO05D001791 6.9e-11 70.5 41 80.5
Thecc.05G251300 Theobroma cacao HOM05D001702 ORTHO05D001791 6.9e-11 70.5 46 69.6
TAR633G2708 Trochodendron aralioides HOM05D001702 ORTHO05D001791 6.9e-11 70.5 42 73.8
Sabra05G0040300 Salix brachista HOM05D001702 ORTHO05D001791 1.2e-10 69.7 41 75.6
Aqoxy5G00631 Aquilegia oxysepala HOM05D001702 ORTHO05D001791 1.5e-10 69.3 45 68.9
Potri.013G029900 Populus trichocarpa HOM05D001702 ORTHO05D001791 2.0e-10 68.9 41 73.2
Sopen10g025960 Solanum pennellii HOM05D001702 ORTHO05D001791 4.5e-10 67.8 45 64.4
Atru.chr2.607 Acer truncatum HOM05D001702 ORTHO05D001791 5.8e-10 67.4 42 69.0
Nn4g26052 Nelumbo nucifera HOM05D001702 ORTHO05D003410 5.8e-10 67.4 42 73.8
CANSAT54G1036 Cannabis sativa HOM05D001702 ORTHO05D001791 1.0e-09 66.6 42 73.8
CANSAT54G2178 Cannabis sativa HOM05D001702 ORTHO05D001791 1.0e-09 66.6 42 73.8
Dinv00473 Davidia involucrata HOM05D001702 ORTHO05D001791 1.0e-09 66.6 42 69.0
Dinv01282 Davidia involucrata HOM05D001702 ORTHO05D001791 1.0e-09 66.6 42 69.0
TAR636G2251 Trochodendron aralioides HOM05D001702 ORTHO05D001791 1.0e-09 66.6 42 73.8
vmacro05058 Vaccinium macrocarpon HOM05D001702 ORTHO05D001791 1.0e-09 66.6 42 66.7
Duzib106G1348 Durio zibethinus HOM05D001702 ORTHO05D001791 1.3e-09 66.2 46 67.4
Duzib106G0121 Durio zibethinus HOM05D001702 ORTHO05D001791 1.7e-09 65.9 46 67.4
Manes.09G161100 Manihot esculenta HOM05D001702 ORTHO05D001791 1.7e-09 65.9 42 69.0
COL.COLO4_36069 Corchorus olitorius HOM05D001702 ORTHO05D001791 2.2e-09 65.5 46 60.9
Glyma.03G242400 Glycine max HOM05D001702 ORTHO05D001791 2.2e-09 65.5 42 69.0
GSVIVG01021978001 Vitis vinifera HOM05D001702 ORTHO05D001791 2.2e-09 65.5 42 66.7
CiPaw.07G011700 Carya illinoinensis HOM05D001702 ORTHO05D001791 2.9e-09 65.1 42 64.3
Duzib106G2050 Durio zibethinus HOM05D001702 ORTHO05D001791 2.9e-09 65.1 46 65.2
Eucgr.H04427 Eucalyptus grandis HOM05D001702 ORTHO05D001791 2.9e-09 65.1 42 66.7
TAR362G0176 Trochodendron aralioides HOM05D001702 ORTHO05D001791 3.8e-09 64.7 45 68.9
Dinv03763 Davidia involucrata HOM05D001702 ORTHO05D001791 5.0e-09 64.3 42 66.7
Lsat_1_v5_gn_4_140321 Lactuca sativa HOM05D001702 ORTHO05D001791 5.0e-09 64.3 42 61.9
QL03p002774 Quercus lobata HOM05D001702 ORTHO05D001791 6.5e-09 63.9 42 69.0
FvH4_6g04670 Fragaria vesca HOM05D001702 ORTHO05D001791 8.4e-09 63.5 46 63.0
FAN02G1712 Fragaria x ananassa HOM05D001702 ORTHO05D001791 8.4e-09 63.5 46 63.0
FAN14G5501 Fragaria x ananassa HOM05D001702 ORTHO05D001791 8.4e-09 63.5 46 63.0
PGR083G0926 Punica granatum HOM05D001702 ORTHO05D001791 8.4e-09 63.5 42 66.7
QL03p002791 Quercus lobata HOM05D001702 ORTHO05D001791 1.1e-08 63.2 42 66.7
RcHm_v2.0_Chr3g0453141 Rosa chinensis HOM05D001702 ORTHO05D001791 1.1e-08 63.2 46 63.0
Atru.chr3.1950 Acer truncatum HOM05D001702 ORTHO05D001791 1.4e-08 62.8 42 61.9
FvH4_6g04570 Fragaria vesca HOM05D001702 ORTHO05D035280 1.4e-08 62.8 42 64.3
FvH4_6g04660 Fragaria vesca HOM05D001702 ORTHO05D001791 1.4e-08 62.8 42 64.3
FAN05G3983 Fragaria x ananassa HOM05D001702 ORTHO05D001791 1.4e-08 62.8 42 64.3
FAN05G4294 Fragaria x ananassa HOM05D001702 ORTHO05D001791 1.4e-08 62.8 42 64.3
FAN09G2272 Fragaria x ananassa HOM05D001702 ORTHO05D001791 1.4e-08 62.8 42 64.3
FAN09G4618 Fragaria x ananassa HOM05D001702 ORTHO05D001791 1.4e-08 62.8 42 64.3
FAN14G4988 Fragaria x ananassa HOM05D001702 ORTHO05D001791 1.4e-08 62.8 42 64.3
Prupe.6G334000 Prunus persica HOM05D001702 ORTHO05D001791 1.4e-08 62.8 45 64.4
PGR031G1056 Punica granatum HOM05D001702 ORTHO05D001791 1.4e-08 62.8 42 64.3
PGSC0003DMG400005284 Solanum tuberosum HOM05D001702 ORTHO05D001791 1.4e-08 62.8 43 65.1
CSS0006477 Camellia sinensis var. sinensis HOM05D001702 ORTHO05D001791 1.9e-08 62.4 42 64.3
CDE01G0192 Ceratophyllum demersum HOM05D001702 ORTHO05D001791 1.9e-08 62.4 46 60.9
CDE01G0446 Ceratophyllum demersum HOM05D001702 ORTHO05D001791 1.9e-08 62.4 46 60.9
Nn3g21269 Nelumbo nucifera HOM05D001702 ORTHO05D001791 1.9e-08 62.4 42 66.7
RcHm_v2.0_Chr3g0453131 Rosa chinensis HOM05D001702 ORTHO05D001791 1.9e-08 62.4 42 61.9
Cfa006509 Carpinus fangiana HOM05D001702 ORTHO05D001791 2.5e-08 62.0 45 66.7
DCAR_001933 Daucus carota HOM05D001702 ORTHO05D001791 2.5e-08 62.0 42 64.3
Manes.09G161200 Manihot esculenta HOM05D001702 ORTHO05D001791 2.5e-08 62.0 45 62.2
CiPaw.07G011800 Carya illinoinensis HOM05D001702 ORTHO05D001791 3.2e-08 61.6 45 66.7
FAN05G2554 Fragaria x ananassa HOM05D001702 ORTHO05D001791 4.2e-08 61.2 46 58.7
Sabra13G0030000 Salix brachista HOM05D001702 ORTHO05D001791 4.2e-08 61.2 45 62.2
GSVIVG01021979001 Vitis vinifera HOM05D001702 ORTHO05D001791 5.5e-08 60.8 45 60.0
MD04G1213800 Malus domestica HOM05D001702 ORTHO05D001791 7.1e-08 60.5 45 57.8
ATR0706G261 Amborella trichopoda HOM05D001702 ORTHO05D001791 9.3e-08 60.1 45 55.6
Aqoxy2G03136 Aquilegia oxysepala HOM05D001702 ORTHO05D001791 9.3e-08 60.1 42 66.7
Eucgr.H04428 Eucalyptus grandis HOM05D001702 ORTHO05D001791 9.3e-08 60.1 45 60.0
Nn4g26055 Nelumbo nucifera HOM05D001702 ORTHO05D001791 9.3e-08 60.1 42 64.3
PGR044G1762 Punica granatum HOM05D001702 ORTHO05D001791 9.3e-08 60.1 42 59.5
COL.COLO4_36070 Corchorus olitorius HOM05D001702 ORTHO05D001791 1.2e-07 59.7 45 57.8
Phvul.002G227400 Phaseolus vulgaris HOM05D001702 ORTHO05D001791 1.6e-07 59.3 42 59.5
Rhsim02G0014200 Rhododendron simsii HOM05D001702 ORTHO05D001791 1.6e-07 59.3 42 59.5
GSVIVG01017822001 Vitis vinifera HOM05D001702 ORTHO05D001791 1.6e-07 59.3 42 59.5
Dinv03764 Davidia involucrata HOM05D001702 ORTHO05D001791 2.1e-07 58.9 45 60.0
Gohir.D08G235700 Gossypium hirsutum HOM05D001702 ORTHO05D001791 2.1e-07 58.9 45 57.8
Gorai.004G250400 Gossypium raimondii HOM05D001702 ORTHO05D001791 2.1e-07 58.9 45 57.8
MD12G1228800 Malus domestica HOM05D001702 ORTHO05D001791 2.1e-07 58.9 45 57.8
CANSAT01G2117 Cannabis sativa HOM05D001702 ORTHO05D001791 2.7e-07 58.5 45 57.8
arahy.Tifrunner.gnm1.ann1.Y5JSF1 Arachis hypogaea HOM05D001702 ORTHO05D001791 3.5e-07 58.2 46 58.7
vmacro15269 Vaccinium macrocarpon HOM05D001702 ORTHO05D001791 3.5e-07 58.2 42 59.5
Atru.chr2.604 Acer truncatum HOM05D001702 ORTHO05D001791 4.6e-07 57.8 42 59.5
COL.COLO4_13942 Corchorus olitorius HOM05D001702 ORTHO05D001791 4.6e-07 57.8 42 59.5
Dinv01283 Davidia involucrata HOM05D001702 ORTHO05D001791 4.6e-07 57.8 45 60.0
Dinv38333 Davidia involucrata HOM05D001702 ORTHO05D001791 4.6e-07 57.8 42 57.1
Dinv44437 Davidia involucrata HOM05D001702 ORTHO05D001791 4.6e-07 57.8 42 59.5
Duzib128G0047 Durio zibethinus HOM05D001702 ORTHO05D001791 4.6e-07 57.8 42 59.5
Gohir.A08G218500 Gossypium hirsutum HOM05D001702 ORTHO05D001791 4.6e-07 57.8 45 57.8
Gohir.A09G061500 Gossypium hirsutum HOM05D001702 ORTHO05D001791 4.6e-07 57.8 42 61.9
Phvul.006G096400 Phaseolus vulgaris HOM05D001702 ORTHO05D001791 4.6e-07 57.8 41 61.0
Potri.013G029800 Populus trichocarpa HOM05D001702 ORTHO05D001791 4.6e-07 57.8 45 57.8
arahy.Tifrunner.gnm1.ann1.GRMH6R Arachis hypogaea HOM05D001702 ORTHO05D001791 6.1e-07 57.4 42 57.1
arahy.Tifrunner.gnm1.ann1.YE67MU Arachis hypogaea HOM05D001702 ORTHO05D001791 6.1e-07 57.4 42 57.1
CSS0042855 Camellia sinensis var. sinensis HOM05D001702 ORTHO05D001791 6.1e-07 57.4 42 59.5
COL.COLO4_25221 Corchorus olitorius HOM05D001702 ORTHO05D001791 6.1e-07 57.4 42 59.5
Lalb_Chr16g0383431 Lupinus albus HOM05D001702 ORTHO05D001791 6.1e-07 57.4 42 61.9
SGA_v2.0_scaffold172G38996 Striga asiatica HOM05D001702 ORTHO05D001791 6.1e-07 57.4 42 61.9
Thecc.04G275800 Theobroma cacao HOM05D001702 ORTHO05D001791 6.1e-07 57.4 42 59.5
ATR0706G046 Amborella trichopoda HOM05D001702 ORTHO05D001791 7.9e-07 57.0 45 51.1
Sabra13G0029900 Salix brachista HOM05D001702 ORTHO05D001791 7.9e-07 57.0 45 55.6
Sed0013245 Sechium edule HOM05D001702 ORTHO05D001791 7.9e-07 57.0 42 59.5
Sc19g0004890 Simmondsia chinensis HOM05D001702 ORTHO05D001791 7.9e-07 57.0 42 54.8
FvH4_6g04470 Fragaria vesca HOM05D001702 ORTHO05D001791 1.0e-06 56.6 42 59.5
ATR0706G111 Amborella trichopoda HOM05D001702 ORTHO05D001791 1.3e-06 56.2 45 55.6
Gorai.006G075100 Gossypium raimondii HOM05D001702 ORTHO05D001791 1.3e-06 56.2 42 59.5
Oeu010966.1 Olea europaea HOM05D001702 ORTHO05D001791 1.3e-06 56.2 42 59.5
Thecc.05G250900 Theobroma cacao HOM05D001702 ORTHO05D001791 1.3e-06 56.2 42 57.1
HPP92_002048 Vanilla planifolia HOM05D001702 ORTHO05D001791 1.3e-06 56.2 41 61.0
VMungo0720G2005 Vigna mungo HOM05D001702 ORTHO05D001791 1.3e-06 56.2 61 45.9
Actinidia00057 Actinidia chinensis HOM05D001702 ORTHO05D001791 1.8e-06 55.8 42 57.1
Duzib151G0205 Durio zibethinus HOM05D001702 ORTHO05D001791 1.8e-06 55.8 42 59.5
Duzib212G0910 Durio zibethinus HOM05D001702 ORTHO05D001791 1.8e-06 55.8 42 57.1
Actinidia32382 Actinidia chinensis HOM05D001702 ORTHO05D001791 2.3e-06 55.5 42 57.1
Aa31LG5G16860 Aethionema arabicum HOM05D001702 ORTHO05D001791 2.3e-06 55.5 43 55.8
Aqoxy5G00632 Aquilegia oxysepala HOM05D001702 ORTHO05D001791 2.3e-06 55.5 42 66.7
Haze_01045 Corylus avellana HOM05D001702 ORTHO05D001791 2.3e-06 55.5 42 54.8
Glyma.20G230300 Glycine max HOM05D001702 ORTHO05D001791 2.3e-06 55.5 45 53.3
MD15G1335600 Malus domestica HOM05D001702 ORTHO05D001791 2.3e-06 55.5 42 59.5
CiPaw.01G154500 Carya illinoinensis HOM05D001702 ORTHO05D001791 3.0e-06 55.1 42 59.5
Ciclev10004711m.g Citrus clementina HOM05D001702 ORTHO05D001791 3.0e-06 55.1 42 54.8
Gohir.A13G100200 Gossypium hirsutum HOM05D001702 ORTHO05D001791 3.0e-06 55.1 46 52.2
Gohir.D13G103600 Gossypium hirsutum HOM05D001702 ORTHO05D001791 3.0e-06 55.1 46 52.2
VMungo0540G2512 Vigna mungo HOM05D001702 ORTHO05D001791 3.0e-06 55.1 41 58.5
CAN.G223.1 Capsicum annuum HOM05D001702 ORTHO05D001791 3.9e-06 54.7 42 52.4
ClCG01G015850 Citrullus lanatus HOM05D001702 ORTHO05D001791 3.9e-06 54.7 42 57.1
DCAR_027114 Daucus carota HOM05D001702 ORTHO05D001791 3.9e-06 54.7 45 53.3
Gohir.D09G060500 Gossypium hirsutum HOM05D001702 ORTHO05D001791 3.9e-06 54.7 41 58.5
SMO203G0062 Selaginella moellendorffii HOM05D001702 ORTHO05D001791 3.9e-06 54.7 45 57.8
TWI73G0800 Tripterygium wilfordii HOM05D001702 ORTHO05D001791 3.9e-06 54.7 42 54.8
arahy.Tifrunner.gnm1.ann1.BB4STL Arachis hypogaea HOM05D001702 ORTHO05D001791 5.1e-06 54.3 42 57.1
arahy.Tifrunner.gnm1.ann1.UG7YIF Arachis hypogaea HOM05D001702 ORTHO05D001791 5.1e-06 54.3 42 57.1
Lj3C811G14 Lonicera japonica HOM05D001702 ORTHO05D001791 5.1e-06 54.3 42 54.8
Phvul.003G035000 Phaseolus vulgaris HOM05D001702 ORTHO05D001791 5.1e-06 54.3 42 57.1
PGR031G2039 Punica granatum HOM05D001702 ORTHO05D001791 5.1e-06 54.3 41 56.1
Aa31LG5G16850 Aethionema arabicum HOM05D001702 ORTHO05D001791 6.7e-06 53.9 43 53.5
MSTRG.21820 Avicennia marina HOM05D001702 ORTHO05D001791 6.7e-06 53.9 41 58.5
AUR62005055 Chenopodium quinoa HOM05D001702 ORTHO05D001791 6.7e-06 53.9 45 53.3
MELO3C007451.2 Cucumis melo HOM05D001702 ORTHO05D001791 6.7e-06 53.9 42 54.8
CsaV3_6G042130 Cucumis sativus L. HOM05D001702 ORTHO05D001791 6.7e-06 53.9 42 54.8
Manes.12G070400 Manihot esculenta HOM05D001702 ORTHO05D001791 6.7e-06 53.9 42 57.1
Sopen01g029700 Solanum pennellii HOM05D001702 ORTHO05D001791 6.7e-06 53.9 42 52.4
THA.LOC104818839 Tarenaya hassleriana HOM05D001702 ORTHO05D001791 6.7e-06 53.9 42 54.8
Hma1.2p1_0078F.1_g040870 Hydrangea macrophylla HOM05D001702 ORTHO05D001791 8.7e-06 53.5 42 57.1
VMungo1215G3068 Vigna mungo HOM05D001702 ORTHO05D001791 8.7e-06 53.5 42 59.5


User provided reference genes

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