Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv08439 Davidia involucrata HOM05D000334 ORTHO05D000200 2.3e-60 235.3 114 100.0
Dinv14068 Davidia involucrata HOM05D000334 ORTHO05D000200 2.8e-10 68.9 35 91.4
Actinidia40103 Actinidia chinensis HOM05D000334 ORTHO05D000200 6.2e-10 67.8 36 88.9
Nitab4.5_0000941g0090 Nicotiana tabacum HOM05D000334 ORTHO05D000200 1.4e-09 66.6 36 88.9
Dinv44602 Davidia involucrata HOM05D000334 ORTHO05D000200 2.4e-09 65.9 35 88.6
Peaxi162Scf00788g00110 Petunia axillaris HOM05D000334 ORTHO05D000200 2.4e-09 65.9 44 77.3
CAN.G231.23 Capsicum annuum HOM05D000334 ORTHO05D000200 3.1e-09 65.5 44 70.5
Migut.G00394 Erythranthe guttata HOM05D000334 ORTHO05D000200 4.0e-09 65.1 47 76.6
Rhsim04G0195800 Rhododendron simsii HOM05D000334 ORTHO05D000200 4.0e-09 65.1 35 88.6
RhsimUnG0084800 Rhododendron simsii HOM05D000334 ORTHO05D000200 4.0e-09 65.1 35 88.6
Nitab4.5_0002446g0130 Nicotiana tabacum HOM05D000334 ORTHO05D000200 5.3e-09 64.7 44 72.7
Nitab4.5_0001497g0140 Nicotiana tabacum HOM05D000334 ORTHO05D000200 6.9e-09 64.3 44 72.7
Peaxi162Scf00131g00064 Petunia axillaris HOM05D000334 ORTHO05D000200 6.9e-09 64.3 100 38.0
TAR636G1310 Trochodendron aralioides HOM05D000334 ORTHO05D000200 9.0e-09 63.9 36 77.8
vmacro15395 Vaccinium macrocarpon HOM05D000334 ORTHO05D000200 1.2e-08 63.5 36 77.8
MBI04_g27057_MAGBIO Magnolia biondii HOM05D000334 ORTHO05D000200 1.5e-08 63.2 36 77.8
Solyc06g053910.4 Solanum lycopersicum HOM05D000334 ORTHO05D000200 1.5e-08 63.2 44 72.7
Sopen06g019070 Solanum pennellii HOM05D000334 ORTHO05D000200 1.5e-08 63.2 44 72.7
Oeu064224.1 Olea europaea HOM05D000334 ORTHO05D000200 2.0e-08 62.8 36 83.3
Oeu064225.1 Olea europaea HOM05D000334 ORTHO05D000200 2.0e-08 62.8 36 83.3
CAN.G749.14 Capsicum annuum HOM05D000334 ORTHO05D000200 2.6e-08 62.4 37 81.1
Duzib212G0279 Durio zibethinus HOM05D000334 ORTHO05D000200 2.6e-08 62.4 36 80.6
Lj3C720T18 Lonicera japonica HOM05D000334 ORTHO05D000200 2.6e-08 62.4 36 83.3
Cc03_g04500 Coffea canephora HOM05D000334 ORTHO05D000200 3.4e-08 62.0 44 70.5
Lsat_1_v5_gn_3_123460 Lactuca sativa HOM05D000334 ORTHO05D000200 3.4e-08 62.0 36 77.8
MBI11_g28616_MAGBIO Magnolia biondii HOM05D000334 ORTHO05D000200 3.4e-08 62.0 44 63.6
Nn1g02517 Nelumbo nucifera HOM05D000334 ORTHO05D000200 4.5e-08 61.6 44 63.6
Nitab4.5_0005057g0020 Nicotiana tabacum HOM05D000334 ORTHO05D000200 4.5e-08 61.6 36 86.1
Actinidia05474 Actinidia chinensis HOM05D000334 ORTHO05D000200 5.8e-08 61.2 36 83.3
Dinv22489 Davidia involucrata HOM05D000334 ORTHO05D000200 5.8e-08 61.2 54 55.6
GSVIVG01003141001 Vitis vinifera HOM05D000334 ORTHO05D000200 5.8e-08 61.2 40 70.0
Actinidia08454 Actinidia chinensis HOM05D000334 ORTHO05D000200 7.6e-08 60.8 36 80.6
Ciclev10020512m.g Citrus clementina HOM05D000334 ORTHO05D000200 7.6e-08 60.8 45 68.9
COL.COLO4_13171 Corchorus olitorius HOM05D000334 ORTHO05D000200 9.9e-08 60.5 36 80.6
THA.LOC104808584 Tarenaya hassleriana HOM05D000334 ORTHO05D000200 9.9e-08 60.5 36 80.6
Thecc.04G241900 Theobroma cacao HOM05D000334 ORTHO05D000200 9.9e-08 60.5 36 80.6
Duzib138G0775 Durio zibethinus HOM05D000334 ORTHO05D000200 1.3e-07 60.1 42 61.9
Rhsim02G0031800 Rhododendron simsii HOM05D000334 ORTHO05D000200 1.3e-07 60.1 36 75.0
TAR262G0001 Trochodendron aralioides HOM05D000334 ORTHO05D000200 1.3e-07 60.1 36 75.0
Duzib211G0605 Durio zibethinus HOM05D000334 ORTHO05D000200 2.2e-07 59.3 40 70.0
HanXRQChr03g0092621 Helianthus annuus HOM05D000334 ORTHO05D000200 2.2e-07 59.3 36 77.8
Nn3g19473 Nelumbo nucifera HOM05D000334 ORTHO05D000200 2.2e-07 59.3 36 75.0
PGSC0003DMG400016273 Solanum tuberosum HOM05D000334 ORTHO05D000200 2.2e-07 59.3 44 68.2
MSTRG.9941 Avicennia marina HOM05D000334 ORTHO05D000200 2.9e-07 58.9 45 73.3
DCAR_027260 Daucus carota HOM05D000334 ORTHO05D000200 2.9e-07 58.9 36 75.0
Eucgr.H03395 Eucalyptus grandis HOM05D000334 ORTHO05D000200 2.9e-07 58.9 35 82.9
PSO210G3762 Papaver somniferum HOM05D000334 ORTHO05D000200 2.9e-07 58.9 37 81.1
CSS0010805 Camellia sinensis var. sinensis HOM05D000334 ORTHO05D000200 3.8e-07 58.5 36 75.0
arahy.Tifrunner.gnm1.ann1.37XEK7 Arachis hypogaea HOM05D000334 ORTHO05D000200 4.9e-07 58.2 37 86.5
arahy.Tifrunner.gnm1.ann1.RX1L3G Arachis hypogaea HOM05D000334 ORTHO05D000200 4.9e-07 58.2 37 86.5
CiPaw.03G256300 Carya illinoinensis HOM05D000334 ORTHO05D000200 4.9e-07 58.2 41 65.9
ClCG07G000570 Citrullus lanatus HOM05D000334 ORTHO05D000200 4.9e-07 58.2 35 77.1
Oeu009112.1 Olea europaea HOM05D000334 ORTHO05D000200 4.9e-07 58.2 102 38.2
Oeu032625.1 Olea europaea HOM05D000334 ORTHO05D000200 4.9e-07 58.2 44 65.9
Sp3g20660 Schrenkiella parvula HOM05D000334 ORTHO05D000200 4.9e-07 58.2 36 77.8
TWI09G1098 Tripterygium wilfordii HOM05D000334 ORTHO05D000200 4.9e-07 58.2 36 80.6
Aa31LG9G2710 Aethionema arabicum HOM05D000334 ORTHO05D000200 6.4e-07 57.8 35 77.1
MSTRG.4078 Avicennia marina HOM05D000334 ORTHO05D000200 6.4e-07 57.8 44 70.5
CANSAT78G0714 Cannabis sativa HOM05D000334 ORTHO05D000200 6.4e-07 57.8 36 83.3
Duzib052G0575 Durio zibethinus HOM05D000334 ORTHO05D000200 6.4e-07 57.8 35 77.1
SalBow3G3096 Salvia bowleyana HOM05D000334 ORTHO05D000200 6.4e-07 57.8 45 68.9
SGA_v2.0_scaffold308G48113 Striga asiatica HOM05D000334 ORTHO05D000200 6.4e-07 57.8 45 71.1
Atru.chr5.1550 Acer truncatum HOM05D000334 ORTHO05D000200 8.4e-07 57.4 45 66.7
Aa31LG8G9470 Aethionema arabicum HOM05D000334 ORTHO05D000200 8.4e-07 57.4 36 72.2
CSS0031760 Camellia sinensis var. sinensis HOM05D000334 ORTHO05D000200 8.4e-07 57.4 40 67.5
Haze_24519 Corylus avellana HOM05D000334 ORTHO05D000200 8.4e-07 57.4 41 63.4
CsaV3_2G013750 Cucumis sativus L. HOM05D000334 ORTHO05D000200 8.4e-07 57.4 35 74.3
Gohir.A08G187800 Gossypium hirsutum HOM05D000334 ORTHO05D000200 8.4e-07 57.4 40 67.5
Gohir.D08G206100 Gossypium hirsutum HOM05D000334 ORTHO05D000200 8.4e-07 57.4 40 67.5
Gorai.004G218200 Gossypium raimondii HOM05D000334 ORTHO05D000200 8.4e-07 57.4 40 67.5
Lalb_Chr02g0149981 Lupinus albus HOM05D000334 ORTHO05D000200 8.4e-07 57.4 37 83.8
Nn2g13062 Nelumbo nucifera HOM05D000334 ORTHO05D000200 8.4e-07 57.4 50 58.0
Psat6g113840 Pisum sativum HOM05D000334 ORTHO05D000200 8.4e-07 57.4 37 83.8
Solyc09g082980.3 Solanum lycopersicum HOM05D000334 ORTHO05D000200 8.4e-07 57.4 36 77.8
Sopen09g031850 Solanum pennellii HOM05D000334 ORTHO05D000200 8.4e-07 57.4 36 77.8
PGSC0003DMG400006081 Solanum tuberosum HOM05D000334 ORTHO05D000200 8.4e-07 57.4 36 77.8
AT3G22970 Arabidopsis thaliana HOM05D000334 ORTHO05D000200 1.1e-06 57.0 36 72.2
MSTRG.24714 Avicennia marina HOM05D000334 ORTHO05D000200 1.1e-06 57.0 45 66.7
Cfa002313 Carpinus fangiana HOM05D000334 ORTHO05D000200 1.1e-06 57.0 41 63.4
Glyma.10G179100 Glycine max HOM05D000334 ORTHO05D000200 1.1e-06 57.0 37 83.8
QL12p042548 Quercus lobata HOM05D000334 ORTHO05D000200 1.1e-06 57.0 44 68.2
TPR.G14028 Trifolium pratense HOM05D000334 ORTHO05D000200 1.1e-06 57.0 37 81.1
TAR365G0993 Trochodendron aralioides HOM05D000334 ORTHO05D000200 1.1e-06 57.0 36 72.2
Manes.01G202700 Manihot esculenta HOM05D000334 ORTHO05D000200 1.4e-06 56.6 45 62.2
TWI53G0477 Tripterygium wilfordii HOM05D000334 ORTHO05D000200 1.4e-06 56.6 36 77.8
MELO3C014315.2 Cucumis melo HOM05D000334 ORTHO05D000200 1.9e-06 56.2 35 71.4
Gohir.D09G223300 Gossypium hirsutum HOM05D000334 ORTHO05D000200 1.9e-06 56.2 36 75.0
Gorai.006G244800 Gossypium raimondii HOM05D000334 ORTHO05D000200 1.9e-06 56.2 36 75.0
Lj6A651T64 Lonicera japonica HOM05D000334 ORTHO05D000200 1.9e-06 56.2 44 63.6
Lj5g0011798 Lotus japonicus HOM05D000334 ORTHO05D000200 1.9e-06 56.2 44 63.6
Prupe.8G233100 Prunus persica HOM05D000334 ORTHO05D000200 1.9e-06 56.2 32 78.1
SGA_v2.0_scaffold1G00549 Striga asiatica HOM05D000334 ORTHO05D000200 1.9e-06 56.2 43 60.5
DCAR_030701 Daucus carota HOM05D000334 ORTHO05D000200 2.4e-06 55.8 33 75.8
Gohir.A09G221100 Gossypium hirsutum HOM05D000334 ORTHO05D000200 2.4e-06 55.8 36 75.0
MD10G1021100 Malus domestica HOM05D000334 ORTHO05D000200 2.4e-06 55.8 54 57.4
TAR362G0195 Trochodendron aralioides HOM05D000334 ORTHO05D000200 2.4e-06 55.8 36 72.2
CARHR220870 Cardamine hirsuta HOM05D000334 ORTHO05D000200 3.2e-06 55.5 36 75.0
FvH4_2g22770 Fragaria vesca HOM05D000334 ORTHO05D000200 3.2e-06 55.5 32 75.0
FAN15G3141 Fragaria x ananassa HOM05D000334 ORTHO05D000200 3.2e-06 55.5 32 75.0
FAN24G3200 Fragaria x ananassa HOM05D000334 ORTHO05D000200 3.2e-06 55.5 32 75.0
Glyma.20G211100 Glycine max HOM05D000334 ORTHO05D000200 3.2e-06 55.5 37 83.8
PGR142G1081 Punica granatum HOM05D000334 ORTHO05D000200 3.2e-06 55.5 35 74.3
RcHm_v2.0_Chr6g0289671 Rosa chinensis HOM05D000334 ORTHO05D000200 3.2e-06 55.5 32 75.0
Glyma.02G143100 Glycine max HOM05D000334 ORTHO05D000200 4.2e-06 55.1 39 66.7
Sp7g12720 Schrenkiella parvula HOM05D000334 ORTHO05D000200 4.2e-06 55.1 36 75.0
Sc13g0004880 Simmondsia chinensis HOM05D000334 ORTHO05D000200 4.2e-06 55.1 36 77.8
TWI73G0502 Tripterygium wilfordii HOM05D000334 ORTHO05D000200 4.2e-06 55.1 36 75.0
TAR633G1506 Trochodendron aralioides HOM05D000334 ORTHO05D000200 4.2e-06 55.1 35 71.4
VMungo0720G1211 Vigna mungo HOM05D000334 ORTHO05D000200 4.2e-06 55.1 37 81.1
BcaB06g26418 Brassica carinata HOM05D000334 ORTHO05D000200 5.5e-06 54.7 36 72.2
CARHR098910 Cardamine hirsuta HOM05D000334 ORTHO05D000200 5.5e-06 54.7 36 69.4
Cpa.g.sc58.1 Carica papaya HOM05D000334 ORTHO05D000200 5.5e-06 54.7 36 69.4
CDE07G1718 Ceratophyllum demersum HOM05D000211 ORTHO05D002517 5.5e-06 54.7 43 60.5
Ca_09718_v3 Cicer arietinum L. HOM05D000334 ORTHO05D000200 5.5e-06 54.7 34 73.5
Glyma.10G002100 Glycine max HOM05D000334 ORTHO05D000200 5.5e-06 54.7 37 75.7
Lalb_Chr06g0168941 Lupinus albus HOM05D000334 ORTHO05D000200 5.5e-06 54.7 37 78.4
SalBow2G2953 Salvia bowleyana HOM05D000334 ORTHO05D000200 5.5e-06 54.7 37 78.4
Sed0001408 Sechium edule HOM05D000334 ORTHO05D000200 5.5e-06 54.7 35 71.4
THA.LOC104810650 Tarenaya hassleriana HOM05D000334 ORTHO05D000200 5.5e-06 54.7 36 72.2
THA.LOC104822802 Tarenaya hassleriana HOM05D000334 ORTHO05D000200 5.5e-06 54.7 36 72.2
unitig_748.g7309 Utricularia gibba HOM05D000334 ORTHO05D000200 5.5e-06 54.7 45 66.7
Carub.0003s2313 Capsella rubella HOM05D000334 ORTHO05D000200 7.1e-06 54.3 36 66.7
Ca_09884_v3 Cicer arietinum L. HOM05D000334 ORTHO05D000200 7.1e-06 54.3 37 75.7
MELO3C006486.2 Cucumis melo HOM05D000334 ORTHO05D000200 7.1e-06 54.3 36 80.6
CsaV3_3G012760 Cucumis sativus L. HOM05D000334 ORTHO05D000200 7.1e-06 54.3 36 80.6
Duzib133G0145 Durio zibethinus HOM05D000334 ORTHO05D000200 7.1e-06 54.3 40 65.0
Lalb_Chr21g0311931 Lupinus albus HOM05D000334 ORTHO05D000200 7.1e-06 54.3 44 68.2
MD07G1143500 Malus domestica HOM05D000334 ORTHO05D000200 7.1e-06 54.3 54 57.4
Manes.05G083100 Manihot esculenta HOM05D000334 ORTHO05D000200 7.1e-06 54.3 39 64.1
Phvul.007G110800 Phaseolus vulgaris HOM05D000334 ORTHO05D000200 7.1e-06 54.3 37 78.4
Potri.002G046300 Populus trichocarpa HOM05D000334 ORTHO05D000200 7.1e-06 54.3 37 73.0
AL3G37380 Arabidopsis lyrata HOM05D000334 ORTHO05D000200 9.3e-06 53.9 36 66.7
FAN20G2804 Fragaria x ananassa HOM05D000334 ORTHO05D000200 9.3e-06 53.9 32 71.9
MD13G1202800 Malus domestica HOM05D000334 ORTHO05D000200 9.3e-06 53.9 36 72.2
Medtr1g076500 Medicago truncatula HOM05D000334 ORTHO05D000200 9.3e-06 53.9 37 78.4
Phvul.007G279300 Phaseolus vulgaris HOM05D000334 ORTHO05D000200 9.3e-06 53.9 37 73.0
TPR.G23938 Trifolium pratense HOM05D000334 ORTHO05D030157 9.3e-06 53.9 71 49.3


User provided reference genes

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