Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv08328 Davidia involucrata HOM05D004029 ORTHO05D004613 3.8e-260 901.0 450 100.0
CSS0001233 Camellia sinensis var. sinensis HOM05D004029 ORTHO05D004613 3.0e-217 758.4 453 84.5
CSS0038840 Camellia sinensis var. sinensis HOM05D004029 ORTHO05D004613 1.5e-216 756.1 453 84.1
Actinidia05171 Actinidia chinensis HOM05D004029 ORTHO05D004613 1.9e-211 739.2 454 81.7
Rhsim06G0193700 Rhododendron simsii HOM05D004029 ORTHO05D004613 5.5e-211 737.6 467 79.9
TAR627G0860 Trochodendron aralioides HOM05D004029 ORTHO05D004613 4.0e-209 731.5 455 80.9
vmacro11822 Vaccinium macrocarpon HOM05D004029 ORTHO05D004613 1.5e-208 729.6 455 81.1
GSVIVG01014409001 Vitis vinifera HOM05D004029 ORTHO05D004613 1.5e-208 729.6 454 80.4
Cfa020529 Carpinus fangiana HOM05D004029 ORTHO05D004613 1.7e-207 726.1 454 78.2
QL08p019114 Quercus lobata HOM05D004029 ORTHO05D004613 9.4e-203 710.3 462 76.0
Atru.chr2.2811 Acer truncatum HOM05D004029 ORTHO05D004613 1.2e-202 709.9 454 76.9
CiPaw.11G174500 Carya illinoinensis HOM05D004029 ORTHO05D004613 1.0e-201 706.8 454 77.8
Potri.011G123900 Populus trichocarpa HOM05D004029 ORTHO05D004613 4.0e-201 704.9 452 76.3
Nn1g03970 Nelumbo nucifera HOM05D004029 ORTHO05D004613 9.8e-200 700.3 454 75.3
TWI38G0763 Tripterygium wilfordii HOM05D004029 ORTHO05D004613 3.7e-199 698.4 455 76.9
Prupe.4G187500 Prunus persica HOM05D004029 ORTHO05D004613 7.0e-198 694.1 454 76.4
Thecc.07G074600 Theobroma cacao HOM05D004029 ORTHO05D004613 2.0e-197 692.6 454 75.6
Haze_09504 Corylus avellana HOM05D004029 ORTHO05D004613 3.5e-197 691.8 454 75.3
COL.COLO4_03559 Corchorus olitorius HOM05D004029 ORTHO05D004613 7.7e-197 690.6 454 75.6
Manes.03G114700 Manihot esculenta HOM05D004029 ORTHO05D004613 3.8e-196 688.3 456 76.8
Duzib268G1628 Durio zibethinus HOM05D004029 ORTHO05D004613 5.0e-196 688.0 461 74.2
MD11G1239600 Malus domestica HOM05D004029 ORTHO05D004613 8.6e-196 687.2 454 75.3
CANSAT11G2434 Cannabis sativa HOM05D004029 ORTHO05D004613 1.9e-195 686.0 454 75.8
MD03G1222200 Malus domestica HOM05D004029 ORTHO05D004613 2.5e-195 685.6 454 75.3
FAN21G1497 Fragaria x ananassa HOM05D004029 ORTHO05D004613 6.1e-194 681.0 454 75.6
Oeu008022.1 Olea europaea HOM05D004029 ORTHO05D004613 6.1e-194 681.0 455 77.1
Duzib213G0443 Durio zibethinus HOM05D004029 ORTHO05D004613 1.4e-193 679.9 461 72.9
PSO675G2841 Papaver somniferum HOM05D004029 ORTHO05D004613 1.4e-193 679.9 455 73.8
PSO541G4143 Papaver somniferum HOM05D004029 ORTHO05D004613 3.0e-193 678.7 455 73.8
FAN16G1973 Fragaria x ananassa HOM05D004029 ORTHO05D004613 6.8e-193 677.6 454 74.7
FvH4_3g20750 Fragaria vesca HOM05D004029 ORTHO05D004613 3.4e-192 675.2 454 74.7
Cpa.g.sc80.100 Carica papaya HOM05D004029 ORTHO05D004613 1.7e-191 672.9 458 73.1
FAN11G1114 Fragaria x ananassa HOM05D004029 ORTHO05D004613 1.4e-190 669.8 454 74.0
Ciclev10007273m.g Citrus clementina HOM05D004029 ORTHO05D004613 7.0e-190 667.5 454 73.6
Gorai.002G074000 Gossypium raimondii HOM05D004029 ORTHO05D004613 9.2e-190 667.2 453 71.7
FAN25G1694 Fragaria x ananassa HOM05D004029 ORTHO05D004613 1.2e-189 666.8 454 74.0
Sabra11G0109200 Salix brachista HOM05D004029 ORTHO05D004613 1.2e-189 666.8 494 68.8
Gohir.D01G054200 Gossypium hirsutum HOM05D004029 ORTHO05D004613 2.7e-189 665.6 453 71.7
RcHm_v2.0_Chr5g0034971 Rosa chinensis HOM05D004029 ORTHO05D004613 4.5e-189 664.8 470 72.6
Sopen07g031610 Solanum pennellii HOM05D004029 ORTHO05D004613 1.0e-188 663.7 454 73.3
Solyc07g063440.3 Solanum lycopersicum HOM05D004029 ORTHO05D004613 1.7e-188 662.9 454 73.3
CsaV3_3G044490 Cucumis sativus L. HOM05D004029 ORTHO05D004613 1.9e-187 659.4 455 70.8
Migut.H01912 Erythranthe guttata HOM05D004029 ORTHO05D004613 5.6e-187 657.9 455 74.5
Aqoxy7G04099 Aquilegia oxysepala HOM05D004029 ORTHO05D004613 1.2e-186 656.8 454 71.4
MELO3C018224.2 Cucumis melo HOM05D004029 ORTHO05D004613 4.0e-185 651.7 455 69.7
Lj1C850G7 Lonicera japonica HOM05D004029 ORTHO05D004613 6.8e-185 651.0 462 75.1
ClCG11G018320 Citrullus lanatus HOM05D004029 ORTHO05D004613 1.2e-184 650.2 455 70.1
MSTRG.12924 Avicennia marina HOM05D004029 ORTHO05D004613 1.7e-183 646.4 456 74.1
CAN.G162.91 Capsicum annuum HOM05D004029 ORTHO05D004613 1.7e-183 646.4 454 71.8
Peaxi162Scf01111g00112 Petunia axillaris HOM05D004029 ORTHO05D004613 3.7e-183 645.2 456 71.7
DCAR_013079 Daucus carota HOM05D004029 ORTHO05D004613 2.0e-181 639.4 464 71.6
Eucgr.F03341 Eucalyptus grandis HOM05D004029 ORTHO05D004613 2.0e-181 639.4 454 71.4
EL10Ac4g08092 Beta vulgaris HOM05D004029 ORTHO05D004613 2.7e-181 639.0 453 69.3
HanXRQChr10g0289491 Helianthus annuus HOM05D004029 ORTHO05D004613 6.0e-181 637.9 456 72.6
Ca_01815_v3 Cicer arietinum L. HOM05D004029 ORTHO05D004613 6.6e-180 634.4 450 69.1
Ca_30535_v3 Cicer arietinum L. HOM05D004029 ORTHO05D004613 6.6e-180 634.4 450 69.1
ECA240G1154 Erigeron canadensis HOM05D004029 ORTHO05D004613 4.3e-179 631.7 442 73.5
VMungo1080G0798 Vigna mungo HOM05D004029 ORTHO05D004613 7.3e-179 630.9 450 68.9
Lj3g0020332 Lotus japonicus HOM05D004029 ORTHO05D004613 1.6e-178 629.8 451 69.4
PGR031G0420 Punica granatum HOM05D004029 ORTHO05D004613 1.6e-178 629.8 454 70.3
arahy.Tifrunner.gnm1.ann1.IWX37I Arachis hypogaea HOM05D004029 ORTHO05D004613 4.7e-178 628.2 450 68.2
Phvul.005G085200 Phaseolus vulgaris HOM05D004029 ORTHO05D004613 6.2e-178 627.9 450 68.7
AUR62015624 Chenopodium quinoa HOM05D004029 ORTHO05D004613 8.0e-178 627.5 454 68.7
Glyma.13G280700 Glycine max HOM05D004029 ORTHO05D004613 8.0e-178 627.5 454 68.9
Medtr2g080050 Medicago truncatula HOM05D004029 ORTHO05D004613 8.0e-178 627.5 450 68.0
Lalb_Chr25g0286611 Lupinus albus HOM05D004029 ORTHO05D004613 3.1e-177 625.5 451 69.0
arahy.Tifrunner.gnm1.ann1.3J4V9H Arachis hypogaea HOM05D004029 ORTHO05D004613 8.9e-177 624.0 450 67.8
THA.LOC104811852 Tarenaya hassleriana HOM05D004029 ORTHO05D004613 3.4e-176 622.1 453 68.0
Ah.06g183680 Amaranthus hybridus HOM05D004029 ORTHO05D004613 9.8e-176 620.5 454 68.1
ATR0064G128 Amborella trichopoda HOM05D004029 ORTHO05D004613 1.7e-175 619.8 454 67.4
SGA_v2.0_scaffold77G25216 Striga asiatica HOM05D004029 ORTHO05D004613 2.9e-175 619.0 457 69.4
Psat5g246120 Pisum sativum HOM05D004029 ORTHO05D004613 8.3e-175 617.5 468 65.4
Sc03g0009690 Simmondsia chinensis HOM05D004029 ORTHO05D004613 1.1e-174 617.1 480 64.8
AUR62029337 Chenopodium quinoa HOM05D004029 ORTHO05D004613 5.4e-174 614.8 454 66.7
AL8G29790 Arabidopsis lyrata HOM05D004029 ORTHO05D004613 1.5e-171 606.7 453 66.9
Sp6g16420 Schrenkiella parvula HOM05D004029 ORTHO05D004613 3.3e-171 605.5 451 66.3
Aa31LG3G10350 Aethionema arabicum HOM05D004029 ORTHO05D004613 4.3e-171 605.1 455 66.4
Carub.0008s1474 Capsella rubella HOM05D004029 ORTHO05D004613 4.3e-171 605.1 453 66.9
Gohir.D11G296200 Gossypium hirsutum HOM05D004029 ORTHO05D004613 9.5e-171 604.0 464 64.7
BcaC03g14313 Brassica carinata HOM05D004029 ORTHO05D004613 1.6e-170 603.2 453 66.4
Gohir.A11G282734 Gossypium hirsutum HOM05D004029 ORTHO05D004613 2.1e-170 602.8 463 65.0
AT5G54440 Arabidopsis thaliana HOM05D004029 ORTHO05D004613 3.6e-170 602.1 453 66.2
Lsat_1_v5_gn_7_105721 Lactuca sativa HOM05D004029 ORTHO05D004613 4.7e-170 601.7 453 69.8
Thhalv10012467m.g Eutrema salsugineum HOM05D004029 ORTHO05D004613 6.2e-170 601.3 454 66.3
C02p17030 Brassica napus HOM05D004029 ORTHO05D004613 1.1e-169 600.5 455 66.4
BolC2t07800H Brassica oleracea HOM05D004029 ORTHO05D004613 1.4e-169 600.1 454 66.5
CARHR267710 Cardamine hirsuta HOM05D004029 ORTHO05D004613 1.8e-169 599.7 453 66.2
Hund02202 Selenicereus undatus HOM05D004029 ORTHO05D004613 3.1e-169 599.0 437 68.6
BcaB05g22133 Brassica carinata HOM05D004029 ORTHO05D004613 6.8e-169 597.8 453 65.8
A02p10290 Brassica napus HOM05D004029 ORTHO05D004613 8.9e-169 597.4 453 65.6
BcaC04g20340 Brassica carinata HOM05D004029 ORTHO05D004613 3.7e-167 592.0 452 63.7
BraA02t06097Z Brassica rapa HOM05D004029 ORTHO05D004613 8.3e-167 590.9 459 64.7
Lalb_Chr01g0016971 Lupinus albus HOM05D004029 ORTHO05D004613 1.1e-166 590.5 455 66.2
HanXRQChr13g0386411 Helianthus annuus HOM05D004029 ORTHO05D004613 5.4e-166 588.2 458 64.2
BolC9t57346H Brassica oleracea HOM05D004029 ORTHO05D004613 9.2e-166 587.4 453 63.6
BcaB08g35795 Brassica carinata HOM05D004029 ORTHO05D004613 1.2e-165 587.0 452 63.9
BraA10t43261Z Brassica rapa HOM05D004029 ORTHO05D004613 2.7e-165 585.9 455 64.2
A10p11660 Brassica napus HOM05D004029 ORTHO05D004613 4.6e-165 585.1 452 64.2
C09p44730 Brassica napus HOM05D004029 ORTHO05D004613 5.1e-164 581.6 453 63.4
Os12g0554400 Oryza sativa ssp. japonica HOM05D004029 ORTHO05D004613 8.9e-161 570.9 454 61.9
ECA236G3046 Erigeron canadensis HOM05D004029 ORTHO05D004613 4.4e-152 542.0 446 61.9
CDE05G1182 Ceratophyllum demersum HOM05D004029 ORTHO05D004613 1.9e-147 526.6 453 58.3
Lsat_1_v5_gn_9_95861 Lactuca sativa HOM05D004029 ORTHO05D004613 6.9e-145 518.1 432 64.6
unitig_0.g2259 Utricularia gibba HOM05D004029 ORTHO05D004613 2.1e-138 496.5 458 58.5
Sed0019496 Sechium edule HOM05D004029 ORTHO05D004613 1.5e-136 490.3 365 66.0
Nitab4.5_0001204g0130 Nicotiana tabacum HOM05D004029 ORTHO05D004613 1.8e-100 370.5 261 72.8
Nitab4.5_0000815g0060 Nicotiana tabacum HOM05D004029 ORTHO05D004613 5.7e-99 365.5 261 73.2
Mapoly0031s0138 Marchantia polymorpha HOM05D004029 ORTHO05D004613 1.6e-96 357.5 542 39.3
Gorai.007G319300 Gossypium raimondii HOM05D004029 ORTHO05D004613 1.6e-93 347.4 272 62.5
Pp3c26_12060 Physcomitrium patens HOM05D004029 ORTHO05D004613 1.8e-84 317.4 548 37.6
Lsat_1_v5_gn_3_80381 Lactuca sativa HOM05D004029 ORTHO05D004613 4.5e-80 302.8 256 62.1
Lsat_1_v5_gn_4_112941 Lactuca sativa HOM05D004029 ORTHO05D004613 4.5e-80 302.8 256 62.1
Lsat_1_v5_gn_7_74701 Lactuca sativa HOM05D004029 ORTHO05D004613 4.5e-80 302.8 256 62.1
SEGI_39917 Sequoiadendron giganteum HOM05D004029 ORTHO05D004613 5.0e-71 272.7 262 53.8
Thhalv10015732m.g Eutrema salsugineum HOM05D004029 ORTHO05D004613 1.6e-69 267.7 180 72.2
Actinidia39414 Actinidia chinensis HOM05D004029 ORTHO05D004613 8.9e-68 261.9 156 81.4
Sed0014205 Sechium edule HOM05D004029 ORTHO05D004613 8.9e-68 261.9 182 73.1
HPP92_020356 Vanilla planifolia HOM05D004029 ORTHO05D004613 2.6e-67 260.4 448 36.2
Glyma.12G220900 Glycine max HOM05D004029 ORTHO05D004613 1.4e-65 254.6 206 61.7
Solyc07g063450.3 Solanum lycopersicum HOM05D000461 ORTHO05D001829 5.2e-52 209.5 161 68.3
SEGI_15865 Sequoiadendron giganteum HOM05D004029 ORTHO05D004613 8.9e-52 208.8 250 44.0
Gohir.A11G282591 Gossypium hirsutum HOM05D004029 ORTHO05D004613 7.6e-51 205.7 136 69.9
GSVIVG01015766001 Vitis vinifera HOM05D004029 ORTHO05D004613 2.2e-50 204.1 109 88.1
GSVIVG01016530001 Vitis vinifera HOM05D004029 ORTHO05D004613 1.9e-49 201.1 109 88.1
GSVIVG01005601001 Vitis vinifera HOM05D004029 ORTHO05D004613 7.8e-48 195.7 109 86.2
GSVIVG01006099001 Vitis vinifera HOM05D004029 ORTHO05D004613 7.8e-48 195.7 109 86.2
GSVIVG01030797001 Vitis vinifera HOM05D004029 ORTHO05D004613 9.6e-46 188.7 109 84.4
Lsat_1_v5_gn_8_16361 Lactuca sativa HOM05D004029 ORTHO05D004613 2.1e-45 187.6 128 72.7
CBR_g48014 Chara braunii HOM05D004029 ORTHO05D004613 6.4e-42 176.0 813 21.3
AagrBONN_evm.TU.Sc2ySwM_344.2130 Anthoceros agrestis HOM05D004029 ORTHO05D004613 4.3e-38 163.3 333 31.5
Lsat_1_v5_gn_8_16381 Lactuca sativa HOM05D004029 ORTHO05D004613 2.3e-31 141.0 87 79.3
Gohir.1Z049574 Gossypium hirsutum HOM05D004029 ORTHO05D004613 2.8e-29 134.0 100 65.0
Lsat_1_v5_gn_6_53560 Lactuca sativa HOM05D004029 ORTHO05D004613 2.4e-28 131.0 120 60.8
Psat1g176880 Pisum sativum HOM05D004029 ORTHO05D004613 6.4e-26 122.9 105 61.9
Psat1g176800 Pisum sativum HOM05D004029 ORTHO05D004613 9.3e-25 119.0 84 70.2
Dinv22372 Davidia involucrata HOM05D004029 ORTHO05D004613 1.1e-20 105.5 61 90.2
Psat4g074000 Pisum sativum HOM05D004029 ORTHO05D004613 6.9e-20 102.8 116 50.9
Psat0ss25761g0120 Pisum sativum HOM05D000735 ORTHO05D004613 4.9e-18 96.7 70 68.6
Gohir.A01G067000 Gossypium hirsutum HOM05D004029 ORTHO05D004613 1.3e-13 82.0 50 76.0
CSS0007909 Camellia sinensis var. sinensis HOM05D001136 ORTHO05D004613 4.1e-12 77.0 93 49.5
Sopen07g031630 Solanum pennellii HOM05D004029 ORTHO05D004613 1.3e-10 72.0 67 56.7
ATR0693G286 Amborella trichopoda HOM05D004029 ORTHO05D004613 4.6e-08 63.5 40 72.5
ATR0693G070 Amborella trichopoda HOM05D004029 ORTHO05D004613 7.9e-08 62.8 46 65.2


User provided reference genes

Program Settings