Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv08327 Davidia involucrata HOM05D004029 ORTHO05D004613 0.0e+00 1221.5 600 100.0
CSS0001233 Camellia sinensis var. sinensis HOM05D004029 ORTHO05D004613 1.7e-287 992.3 592 85.0
CSS0038840 Camellia sinensis var. sinensis HOM05D004029 ORTHO05D004613 1.7e-287 992.3 592 85.0
Actinidia05171 Actinidia chinensis HOM05D004029 ORTHO05D004613 1.2e-285 986.1 592 83.4
GSVIVG01014409001 Vitis vinifera HOM05D004029 ORTHO05D004613 1.2e-285 986.1 624 79.8
Rhsim06G0193700 Rhododendron simsii HOM05D004029 ORTHO05D004613 1.2e-280 969.5 592 82.3
Prupe.4G187500 Prunus persica HOM05D004029 ORTHO05D004613 3.7e-279 964.5 592 80.4
COL.COLO4_03559 Corchorus olitorius HOM05D004029 ORTHO05D004613 6.3e-279 963.8 591 80.5
CiPaw.11G174500 Carya illinoinensis HOM05D004029 ORTHO05D004613 4.1e-278 961.1 592 80.6
MD11G1239600 Malus domestica HOM05D004029 ORTHO05D004613 2.7e-277 958.4 592 79.9
Potri.011G123900 Populus trichocarpa HOM05D004029 ORTHO05D004613 6.5e-276 953.7 592 80.2
RcHm_v2.0_Chr5g0034971 Rosa chinensis HOM05D004029 ORTHO05D004613 2.5e-275 951.8 592 79.4
Thecc.07G074600 Theobroma cacao HOM05D004029 ORTHO05D004613 3.2e-275 951.4 591 80.2
Cfa020529 Carpinus fangiana HOM05D004029 ORTHO05D004613 5.2e-273 944.1 595 79.2
Eucgr.F03341 Eucalyptus grandis HOM05D004029 ORTHO05D004613 5.2e-273 944.1 592 79.1
Duzib268G1628 Durio zibethinus HOM05D004029 ORTHO05D004613 6.8e-273 943.7 591 79.7
Manes.03G114700 Manihot esculenta HOM05D004029 ORTHO05D004613 1.2e-272 943.0 592 78.7
Nn1g03970 Nelumbo nucifera HOM05D004029 ORTHO05D004613 2.0e-272 942.2 593 79.9
Sabra11G0109200 Salix brachista HOM05D004029 ORTHO05D004613 2.0e-272 942.2 592 79.4
FAN11G1114 Fragaria x ananassa HOM05D004029 ORTHO05D004613 3.4e-272 941.4 592 79.1
FAN21G1497 Fragaria x ananassa HOM05D004029 ORTHO05D004613 7.5e-272 940.3 592 78.7
FAN25G1694 Fragaria x ananassa HOM05D004029 ORTHO05D004613 9.8e-272 939.9 592 78.7
FAN16G1973 Fragaria x ananassa HOM05D004029 ORTHO05D004613 1.7e-271 939.1 592 78.9
FvH4_3g20750 Fragaria vesca HOM05D004029 ORTHO05D004613 6.3e-271 937.2 592 78.7
MD03G1222200 Malus domestica HOM05D004029 ORTHO05D004613 6.3e-271 937.2 592 79.1
Duzib213G0443 Durio zibethinus HOM05D004029 ORTHO05D004613 1.8e-270 935.6 591 79.5
DCAR_013079 Daucus carota HOM05D004029 ORTHO05D004613 5.4e-270 934.1 592 79.2
TWI38G0763 Tripterygium wilfordii HOM05D004029 ORTHO05D004613 5.4e-270 934.1 592 78.7
Gohir.D01G054200 Gossypium hirsutum HOM05D004029 ORTHO05D004613 7.7e-269 930.2 591 77.8
Sc03g0009690 Simmondsia chinensis HOM05D004029 ORTHO05D004613 8.6e-268 926.8 612 76.0
Gorai.002G074000 Gossypium raimondii HOM05D004029 ORTHO05D004613 1.5e-267 926.0 591 77.7
PGR031G0420 Punica granatum HOM05D004029 ORTHO05D004613 1.5e-267 926.0 592 78.2
vmacro11822 Vaccinium macrocarpon HOM05D004029 ORTHO05D004613 1.5e-267 926.0 635 75.3
Lsat_1_v5_gn_9_95861 Lactuca sativa HOM05D004029 ORTHO05D004613 2.5e-267 925.2 592 77.7
Ah.06g183680 Amaranthus hybridus HOM05D004029 ORTHO05D004613 1.0e-265 919.8 592 77.0
Glyma.12G220900 Glycine max HOM05D004029 ORTHO05D004613 6.8e-265 917.1 592 78.5
Hund02202 Selenicereus undatus HOM05D004029 ORTHO05D004613 8.9e-265 916.8 592 76.9
Sed0019496 Sechium edule HOM05D004029 ORTHO05D004613 2.0e-264 915.6 592 77.2
Ca_01815_v3 Cicer arietinum L. HOM05D004029 ORTHO05D004613 5.7e-264 914.1 592 77.9
CsaV3_3G044490 Cucumis sativus L. HOM05D004029 ORTHO05D004613 7.5e-264 913.7 592 77.0
Glyma.13G280700 Glycine max HOM05D004029 ORTHO05D004613 7.5e-264 913.7 592 78.2
HanXRQChr10g0289491 Helianthus annuus HOM05D004029 ORTHO05D004613 9.8e-264 913.3 592 76.9
Haze_09504 Corylus avellana HOM05D004029 ORTHO05D004613 3.7e-263 911.4 595 77.8
Carub.0008s1474 Capsella rubella HOM05D004029 ORTHO05D004613 8.3e-263 910.2 592 76.9
MSTRG.12924 Avicennia marina HOM05D004029 ORTHO05D004613 1.1e-262 909.8 592 77.4
Thhalv10012467m.g Eutrema salsugineum HOM05D004029 ORTHO05D004613 1.4e-262 909.4 592 76.2
CANSAT11G2434 Cannabis sativa HOM05D004029 ORTHO05D004613 1.8e-262 909.1 592 76.2
Aa31LG3G10350 Aethionema arabicum HOM05D004029 ORTHO05D004613 2.4e-262 908.7 593 76.9
AT5G54440 Arabidopsis thaliana HOM05D004029 ORTHO05D004613 2.4e-262 908.7 592 76.5
Oeu008022.1 Olea europaea HOM05D004029 ORTHO05D004613 2.4e-262 908.7 592 76.9
Peaxi162Scf01111g00112 Petunia axillaris HOM05D004029 ORTHO05D004613 2.4e-262 908.7 592 77.9
THA.LOC104811852 Tarenaya hassleriana HOM05D004029 ORTHO05D004613 2.4e-262 908.7 592 76.4
Aqoxy7G04099 Aquilegia oxysepala HOM05D004029 ORTHO05D004613 5.4e-262 907.5 593 77.6
VMungo1080G0798 Vigna mungo HOM05D004029 ORTHO05D004613 2.0e-261 905.6 592 76.4
Lj3g0020332 Lotus japonicus HOM05D004029 ORTHO05D004613 2.7e-261 905.2 592 77.2
Lalb_Chr25g0286611 Lupinus albus HOM05D004029 ORTHO05D004613 5.9e-261 904.0 592 77.0
Sp6g16420 Schrenkiella parvula HOM05D004029 ORTHO05D004613 7.8e-261 903.7 592 75.8
AUR62029337 Chenopodium quinoa HOM05D004029 ORTHO05D004613 1.0e-260 903.3 592 76.2
Medtr2g080050 Medicago truncatula HOM05D004029 ORTHO05D004613 2.3e-260 902.1 592 76.5
Phvul.005G085200 Phaseolus vulgaris HOM05D004029 ORTHO05D004613 2.3e-260 902.1 592 76.7
PSO675G2841 Papaver somniferum HOM05D004029 ORTHO05D004613 8.6e-260 900.2 595 76.5
ClCG11G018320 Citrullus lanatus HOM05D004029 ORTHO05D004613 1.9e-259 899.0 664 69.9
AUR62015624 Chenopodium quinoa HOM05D004029 ORTHO05D004613 4.3e-259 897.9 592 76.0
Migut.H01912 Erythranthe guttata HOM05D004029 ORTHO05D004613 4.3e-259 897.9 617 73.7
Psat5g246120 Pisum sativum HOM05D004029 ORTHO05D004613 5.6e-259 897.5 592 76.4
A02p10290 Brassica napus HOM05D004029 ORTHO05D004613 2.1e-258 895.6 592 74.5
BraA02t06097Z Brassica rapa HOM05D004029 ORTHO05D004613 2.1e-258 895.6 592 74.5
Lj1C850G7 Lonicera japonica HOM05D004029 ORTHO05D004613 2.1e-258 895.6 593 77.7
BolC2t07800H Brassica oleracea HOM05D004029 ORTHO05D004613 3.6e-258 894.8 592 74.5
BcaC03g14313 Brassica carinata HOM05D004029 ORTHO05D004613 4.7e-258 894.4 592 74.5
C02p17030 Brassica napus HOM05D004029 ORTHO05D004613 4.7e-258 894.4 592 74.5
PSO541G4143 Papaver somniferum HOM05D004029 ORTHO05D004613 4.7e-258 894.4 595 76.0
Sopen07g031610 Solanum pennellii HOM05D004029 ORTHO05D004613 4.7e-258 894.4 592 76.7
BcaB05g22133 Brassica carinata HOM05D004029 ORTHO05D004613 6.1e-258 894.0 592 74.7
BcaC04g20340 Brassica carinata HOM05D004029 ORTHO05D004613 4.0e-257 891.3 592 74.7
BolC9t57346H Brassica oleracea HOM05D004029 ORTHO05D004613 4.0e-257 891.3 592 74.7
Solyc07g063440.3 Solanum lycopersicum HOM05D004029 ORTHO05D004613 1.5e-256 889.4 592 76.5
ECA240G1154 Erigeron canadensis HOM05D004029 ORTHO05D004613 4.4e-256 887.9 592 75.5
C09p44730 Brassica napus HOM05D004029 ORTHO05D004613 5.7e-256 887.5 592 74.3
arahy.Tifrunner.gnm1.ann1.3J4V9H Arachis hypogaea HOM05D004029 ORTHO05D004613 7.5e-256 887.1 592 75.3
BcaB08g35795 Brassica carinata HOM05D004029 ORTHO05D004613 9.8e-256 886.7 592 74.5
A10p11660 Brassica napus HOM05D004029 ORTHO05D004613 2.9e-255 885.2 592 74.2
BraA10t43261Z Brassica rapa HOM05D004029 ORTHO05D004613 4.9e-255 884.4 592 74.2
CAN.G162.91 Capsicum annuum HOM05D004029 ORTHO05D004613 8.3e-255 883.6 592 75.8
Gohir.A01G067000 Gossypium hirsutum HOM05D004029 ORTHO05D004613 8.3e-255 883.6 591 74.6
Nitab4.5_0001204g0130 Nicotiana tabacum HOM05D004029 ORTHO05D004613 2.4e-254 882.1 592 76.9
arahy.Tifrunner.gnm1.ann1.IWX37I Arachis hypogaea HOM05D004029 ORTHO05D004613 5.4e-254 880.9 603 74.1
Lalb_Chr01g0016971 Lupinus albus HOM05D004029 ORTHO05D004613 2.0e-253 879.0 592 75.2
EL10Ac4g08092 Beta vulgaris HOM05D004029 ORTHO05D004613 6.0e-253 877.5 581 74.5
CARHR267710 Cardamine hirsuta HOM05D004029 ORTHO05D004613 1.3e-252 876.3 526 81.6
ATR0064G128 Amborella trichopoda HOM05D004029 ORTHO05D004613 2.1e-250 869.0 601 73.2
Gorai.007G319300 Gossypium raimondii HOM05D004029 ORTHO05D004613 5.2e-249 864.4 591 73.1
Atru.chr2.2811 Acer truncatum HOM05D004029 ORTHO05D004613 8.9e-249 863.6 554 78.2
SGA_v2.0_scaffold77G25216 Striga asiatica HOM05D004029 ORTHO05D004613 1.2e-245 853.2 655 67.5
Ca_30535_v3 Cicer arietinum L. HOM05D004029 ORTHO05D004613 2.7e-245 852.0 592 74.2
QL08p019114 Quercus lobata HOM05D004029 ORTHO05D004613 8.6e-244 847.0 842 56.4
Lsat_1_v5_gn_7_105721 Lactuca sativa HOM05D004029 ORTHO05D004613 2.1e-242 842.4 592 71.5
AL8G29790 Arabidopsis lyrata HOM05D004029 ORTHO05D004613 5.8e-240 834.3 551 75.9
Gohir.A11G282734 Gossypium hirsutum HOM05D004029 ORTHO05D004613 1.3e-239 833.2 571 72.9
ECA236G3046 Erigeron canadensis HOM05D004029 ORTHO05D004613 1.2e-234 816.6 592 70.1
Ciclev10007273m.g Citrus clementina HOM05D004029 ORTHO05D004613 1.9e-230 802.7 529 77.1
Os12g0554400 Oryza sativa ssp. japonica HOM05D004029 ORTHO05D004613 2.3e-228 795.8 594 67.8
Nitab4.5_0000815g0060 Nicotiana tabacum HOM05D004029 ORTHO05D004613 3.2e-222 775.4 633 65.9
Zm00001eb137170 Zea mays HOM05D004029 ORTHO05D004613 1.6e-221 773.1 532 71.6
Gohir.D11G296200 Gossypium hirsutum HOM05D004029 ORTHO05D004613 3.7e-210 735.3 526 70.7
HanXRQChr13g0386411 Helianthus annuus HOM05D004029 ORTHO05D004613 3.2e-206 722.2 591 62.8
TAR627G0860 Trochodendron aralioides HOM05D004029 ORTHO05D004613 5.3e-201 704.9 443 81.3
Mapoly0031s0138 Marchantia polymorpha HOM05D004029 ORTHO05D004613 5.9e-176 621.7 631 52.1
Psat4g074000 Pisum sativum HOM05D004029 ORTHO05D004613 2.2e-170 603.2 428 71.3
Pp3c26_12060 Physcomitrium patens HOM05D004029 ORTHO05D004613 2.0e-163 580.1 601 51.9
Gohir.1Z049674 Gossypium hirsutum HOM05D004029 ORTHO05D004613 2.7e-160 569.7 350 79.7
AagrBONN_evm.TU.Sc2ySwM_344.2130 Anthoceros agrestis HOM05D004029 ORTHO05D004613 3.4e-155 552.7 596 50.3
unitig_0.g2259 Utricularia gibba HOM05D004029 ORTHO05D004613 4.1e-145 519.2 516 56.0
CDE05G1182 Ceratophyllum demersum HOM05D004029 ORTHO05D004613 7.5e-139 498.4 383 68.4
Cpa.g.sc80.100 Carica papaya HOM05D004029 ORTHO05D004613 9.5e-134 481.5 313 78.3
CBR_g48014 Chara braunii HOM05D004029 ORTHO05D004613 1.8e-132 477.2 592 46.3
Psat3g119680 Pisum sativum HOM05D004029 ORTHO05D004613 1.1e-116 424.9 259 80.3
MELO3C018224.2 Cucumis melo HOM05D004029 ORTHO05D004613 6.4e-114 415.6 296 72.0
SEGI_37124 Sequoiadendron giganteum HOM05D004029 ORTHO05D004613 4.2e-97 359.8 316 62.0
SEGI_15865 Sequoiadendron giganteum HOM05D004029 ORTHO05D004613 3.3e-70 270.4 212 64.2
TAR627G0431 Trochodendron aralioides HOM05D004029 ORTHO05D004613 1.5e-57 228.4 119 89.1
SMO115G0239 Selaginella moellendorffii HOM05D004029 ORTHO05D004613 3.2e-57 227.3 212 56.1
ATR0693G350 Amborella trichopoda HOM05D004029 ORTHO05D004613 2.2e-53 214.5 152 69.7
Atru.chr2.2808 Acer truncatum HOM05D004029 ORTHO05D004613 1.2e-46 192.2 104 84.6
SHI21494 Sapria himalayana HOM05D004029 ORTHO05D004613 3.4e-46 190.7 147 64.6
Pp3c3_4080 Physcomitrium patens HOM05D004029 ORTHO05D004613 1.6e-40 171.8 205 45.4
HPP92_027773 Vanilla planifolia HOM05D004029 ORTHO05D004613 2.0e-38 164.9 98 83.7
Haze_01245 Corylus avellana HOM05D007775 ORTHO05D009858 2.8e-32 144.4 130 59.2
HPP92_020357 Vanilla planifolia HOM05D004029 ORTHO05D004613 3.1e-23 114.4 112 54.5
Lsat_1_v5_gn_8_148540 Lactuca sativa HOM05D004029 ORTHO05D004613 1.0e-18 99.4 81 63.0
MD16G1231300 Malus domestica HOM05D004029 ORTHO05D004613 2.5e-17 94.7 57 73.7
Cfa025671 Carpinus fangiana HOM05D004029 ORTHO05D004613 9.5e-17 92.8 557 23.7
ATR0693G140 Amborella trichopoda HOM05D004029 ORTHO05D004613 1.6e-16 92.0 97 50.5
Lsat_1_v5_gn_4_161921 Lactuca sativa HOM05D004029 ORTHO05D004613 1.4e-15 89.0 99 50.5
HPP92_020358 Vanilla planifolia HOM05D004029 ORTHO05D004613 5.2e-15 87.0 53 69.8
Psat1g176800 Pisum sativum HOM05D004029 ORTHO05D004613 6.8e-15 86.7 98 49.0
Psat1g176880 Pisum sativum HOM05D004029 ORTHO05D004613 8.9e-15 86.3 97 49.5
Rhsim06G0194500 Rhododendron simsii HOM05D004029 ORTHO05D004613 1.3e-10 72.4 36 88.9
Gohir.D11G296250 Gossypium hirsutum HOM05D004029 ORTHO05D004613 5.1e-10 70.5 33 90.9
Medtr4g126280 Medicago truncatula HOM05D004029 ORTHO05D004613 5.6e-09 67.0 33 84.8
Pp3c3_4110 Physcomitrium patens HOM05D004029 ORTHO05D004613 5.6e-09 67.0 69 47.8
MBI16_g04070_MAGBIO Magnolia biondii HOM05D005084 ORTHO05D006254 2.8e-08 64.7 46 69.6


User provided reference genes

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