Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv08242 Davidia involucrata HOM05D004639 ORTHO05D005201 1.9e-59 232.3 111 100.0
Dinv01634 Davidia involucrata HOM05D004639 ORTHO05D005201 1.9e-56 222.2 106 100.0
TAR376G0371 Trochodendron aralioides HOM05D004639 ORTHO05D005201 4.4e-45 184.5 104 80.8
Cpa.g.sc15.68 Carica papaya HOM05D004639 ORTHO05D005201 3.5e-42 174.9 103 75.7
Actinidia23035 Actinidia chinensis HOM05D004639 ORTHO05D005201 1.7e-41 172.6 101 74.3
Ciclev10028470m.g Citrus clementina HOM05D004639 ORTHO05D005201 1.1e-40 169.9 104 74.0
Hma1.2p1_1077F.1_g254710 Hydrangea macrophylla HOM05D004639 ORTHO05D005201 4.3e-40 167.9 99 77.8
MD00G1164900 Malus domestica HOM05D004639 ORTHO05D005201 7.3e-40 167.2 105 73.3
Prupe.4G286600 Prunus persica HOM05D004639 ORTHO05D005201 1.3e-39 166.4 97 77.3
Rhsim11G0007200 Rhododendron simsii HOM05D004639 ORTHO05D005201 1.6e-39 166.0 103 71.8
THA.LOC104805811 Tarenaya hassleriana HOM05D004639 ORTHO05D005201 1.6e-39 166.0 102 69.6
Aqoxy4G01839 Aquilegia oxysepala HOM05D004639 ORTHO05D005201 4.8e-39 164.5 98 72.4
Sabra12G0026100 Salix brachista HOM05D004639 ORTHO05D005201 1.4e-38 162.9 106 67.9
vmacro04281 Vaccinium macrocarpon HOM05D004639 ORTHO05D005201 1.8e-38 162.5 97 77.3
vmacro22429 Vaccinium macrocarpon HOM05D004639 ORTHO05D005201 1.8e-38 162.5 97 77.3
Potri.012G037700 Populus trichocarpa HOM05D004639 ORTHO05D005201 5.3e-38 161.0 104 68.3
QL01p052883 Quercus lobata HOM05D011240 ORTHO05D005201 5.3e-38 161.0 97 74.2
CANSAT64G2852 Cannabis sativa HOM05D004639 ORTHO05D005201 1.2e-37 159.8 104 68.3
Oeu061992.1 Olea europaea HOM05D004639 ORTHO05D005201 1.2e-37 159.8 100 70.0
QL01p053168 Quercus lobata HOM05D004639 ORTHO05D005201 1.5e-37 159.5 97 73.2
Migut.A01100 Erythranthe guttata HOM05D004639 ORTHO05D005201 2.0e-37 159.1 99 71.7
QL01p053770 Quercus lobata HOM05D004639 ORTHO05D005201 2.6e-37 158.7 97 73.2
CANSAT64G1383 Cannabis sativa HOM05D004639 ORTHO05D005201 9.9e-37 156.8 104 67.3
CANSAT64G2443 Cannabis sativa HOM05D004639 ORTHO05D005201 9.9e-37 156.8 104 67.3
Nitab4.5_0010824g0010 Nicotiana tabacum HOM05D004639 ORTHO05D005201 3.8e-36 154.8 95 71.6
Manes.18G143900 Manihot esculenta HOM05D004639 ORTHO05D005201 4.9e-36 154.5 95 71.6
SalBow6G0181 Salvia bowleyana HOM05D004639 ORTHO05D005201 8.4e-36 153.7 98 69.4
SalBow6G5700 Salvia bowleyana HOM05D004639 ORTHO05D005201 8.4e-36 153.7 98 69.4
Carub.0003s0750 Capsella rubella HOM05D004639 ORTHO05D005201 1.9e-35 152.5 94 72.3
Cc00_g06760 Coffea canephora HOM05D004639 ORTHO05D005201 1.9e-35 152.5 101 64.4
Gohir.A09G007300 Gossypium hirsutum HOM05D004639 ORTHO05D005201 1.9e-35 152.5 101 67.3
Nitab4.5_0001799g0030 Nicotiana tabacum HOM05D004639 ORTHO05D005201 1.9e-35 152.5 95 71.6
Atru.chr9.65 Acer truncatum HOM05D004639 ORTHO05D005201 2.4e-35 152.1 99 68.7
Gorai.006G008100 Gossypium raimondii HOM05D004639 ORTHO05D005201 4.2e-35 151.4 101 67.3
GSVIVG01003641001 Vitis vinifera HOM05D004639 ORTHO05D005201 4.2e-35 151.4 97 69.1
Aa31LG5G18470 Aethionema arabicum HOM05D004639 ORTHO05D005201 7.1e-35 150.6 97 71.1
Solyc02g021100.3 Solanum lycopersicum HOM05D004639 ORTHO05D005201 7.1e-35 150.6 98 67.3
SGA_v2.0_scaffold291G47333 Striga asiatica HOM05D004639 ORTHO05D005201 7.1e-35 150.6 99 66.7
Thecc.04G056700 Theobroma cacao HOM05D004639 ORTHO05D005201 7.1e-35 150.6 103 68.0
TWI15G1026 Tripterygium wilfordii HOM05D004639 ORTHO05D005201 9.3e-35 150.2 102 66.7
arahy.Tifrunner.gnm1.ann1.CP937L Arachis hypogaea HOM05D004639 ORTHO05D005201 1.2e-34 149.8 97 68.0
arahy.Tifrunner.gnm1.ann1.GWL1KB Arachis hypogaea HOM05D004639 ORTHO05D005201 1.2e-34 149.8 97 68.0
Sopen02g005400 Solanum pennellii HOM05D004639 ORTHO05D005201 1.2e-34 149.8 98 67.3
AL3G19300 Arabidopsis lyrata HOM05D004639 ORTHO05D005201 1.6e-34 149.4 94 70.2
Sp3g06840 Schrenkiella parvula HOM05D004639 ORTHO05D005201 1.6e-34 149.4 94 72.3
CARHR082670 Cardamine hirsuta HOM05D004639 ORTHO05D005201 2.1e-34 149.1 95 70.5
Gohir.D09G006600 Gossypium hirsutum HOM05D004639 ORTHO05D005201 2.1e-34 149.1 101 66.3
CAN.G989.2 Capsicum annuum HOM05D004639 ORTHO05D005201 3.5e-34 148.3 100 65.0
RcHm_v2.0_Chr3g0497491 Rosa chinensis HOM05D004639 ORTHO05D005201 3.5e-34 148.3 96 72.9
A07p00740 Brassica napus HOM05D004639 ORTHO05D005201 7.9e-34 147.1 94 70.2
BraA07t27872Z Brassica rapa HOM05D004639 ORTHO05D005201 1.0e-33 146.7 94 70.2
TWI31G0951 Tripterygium wilfordii HOM05D004639 ORTHO05D005201 1.0e-33 146.7 104 64.4
Peaxi162Scf00331g00311 Petunia axillaris HOM05D004639 ORTHO05D005201 1.3e-33 146.4 95 67.4
TPR.G9531 Trifolium pratense HOM05D004639 ORTHO05D005201 1.3e-33 146.4 104 61.5
Thhalv10020704m.g Eutrema salsugineum HOM05D004639 ORTHO05D005201 1.8e-33 146.0 94 70.2
BcaB04g16901 Brassica carinata HOM05D004639 ORTHO05D005201 2.3e-33 145.6 94 70.2
Lj2g0020909 Lotus japonicus HOM05D004639 ORTHO05D005201 2.3e-33 145.6 94 71.3
MBI03_g13041_MAGBIO Magnolia biondii HOM05D004639 ORTHO05D005201 2.3e-33 145.6 95 67.4
Phvul.L000400 Phaseolus vulgaris HOM05D004639 ORTHO05D005201 2.3e-33 145.6 94 68.1
Glyma.13G009500 Glycine max HOM05D004639 ORTHO05D005201 3.0e-33 145.2 97 68.0
VMungo0540G1855 Vigna mungo HOM05D004639 ORTHO05D005201 3.0e-33 145.2 95 67.4
C07p01740 Brassica napus HOM05D004639 ORTHO05D005201 3.9e-33 144.8 94 69.1
BolC7t40577H Brassica oleracea HOM05D004639 ORTHO05D005201 3.9e-33 144.8 94 69.1
MSTRG.8994 Avicennia marina HOM05D004639 ORTHO05D005201 1.1e-32 143.3 97 67.0
FvH4_1g27870 Fragaria vesca HOM05D004639 ORTHO05D005201 1.5e-32 142.9 96 67.7
FAN26G1776 Fragaria x ananassa HOM05D004639 ORTHO05D005201 1.5e-32 142.9 96 67.7
FAN19G3130 Fragaria x ananassa HOM05D004639 ORTHO05D005201 1.9e-32 142.5 96 67.7
PSO384G4518 Papaver somniferum HOM05D004639 ORTHO05D005201 5.6e-32 141.0 95 63.2
PSO493G0020 Papaver somniferum HOM05D004639 ORTHO05D005201 5.6e-32 141.0 95 63.2
Medtr0037s0060 Medicago truncatula HOM05D004639 ORTHO05D005201 7.4e-32 140.6 104 62.5
DCAR_016067 Daucus carota HOM05D004639 ORTHO05D005201 1.3e-31 139.8 101 62.4
Lsat_1_v5_gn_3_140620 Lactuca sativa HOM05D004639 ORTHO05D005201 2.1e-31 139.0 102 58.8
SEGI_27362 Sequoiadendron giganteum HOM05D004639 ORTHO05D005201 2.1e-31 139.0 97 64.9
Nn5g27169 Nelumbo nucifera HOM05D004639 ORTHO05D005201 3.7e-31 138.3 94 67.0
ECA234G0087 Erigeron canadensis HOM05D004639 ORTHO05D005201 6.2e-31 137.5 102 60.8
Lalb_Chr00c23g0406301 Lupinus albus HOM05D004639 ORTHO05D005201 8.1e-31 137.1 97 67.0
Lalb_Chr00c55g0413711 Lupinus albus HOM05D004639 ORTHO05D005201 8.1e-31 137.1 97 67.0
Lalb_Chr18g0049251 Lupinus albus HOM05D004639 ORTHO05D005201 8.1e-31 137.1 97 67.0
PGR031G3121 Punica granatum HOM05D004639 ORTHO05D005201 1.8e-30 136.0 96 59.4
ClCG08G005050 Citrullus lanatus HOM05D004639 ORTHO05D005201 2.4e-30 135.6 99 60.6
AUR62017756 Chenopodium quinoa HOM05D004639 ORTHO05D005201 6.9e-30 134.0 95 58.9
MELO3C022885.2 Cucumis melo HOM05D004639 ORTHO05D005201 9.0e-30 133.7 99 58.6
Lj2g0022882 Lotus japonicus HOM05D004639 ORTHO05D005201 2.0e-29 132.5 94 67.0
ATR0068G005 Amborella trichopoda HOM05D004639 ORTHO05D005201 2.6e-29 132.1 97 60.8
CsaV3_5G037160 Cucumis sativus L. HOM05D004639 ORTHO05D005201 2.6e-29 132.1 99 57.6
HanXRQChr12g0386021 Helianthus annuus HOM05D004639 ORTHO05D005201 2.6e-29 132.1 97 60.8
Ah.05g167280 Amaranthus hybridus HOM05D001485 ORTHO05D001407 5.8e-29 131.0 95 60.0
Medtr0037s0250 Medicago truncatula HOM05D004639 ORTHO05D005201 9.9e-29 130.2 95 60.0
Potri.014G187300 Populus trichocarpa HOM05D004639 ORTHO05D005201 1.7e-28 129.4 98 60.2
Potri.014G189400 Populus trichocarpa HOM05D004639 ORTHO05D005201 1.7e-28 129.4 98 60.2
ECA234G3785 Erigeron canadensis HOM05D004639 ORTHO05D005201 2.9e-28 128.6 102 57.8
Potri.014G187000 Populus trichocarpa HOM05D004639 ORTHO05D005201 2.9e-28 128.6 98 60.2
HanXRQChr16g0532761 Helianthus annuus HOM05D004639 ORTHO05D005201 6.4e-28 127.5 97 58.8
Sabra19G0060200 Salix brachista HOM05D004639 ORTHO05D005201 6.4e-28 127.5 94 61.7
Sabra19G0060700 Salix brachista HOM05D004639 ORTHO05D005201 6.4e-28 127.5 94 61.7
Sabra19G0060900 Salix brachista HOM05D004639 ORTHO05D005201 6.4e-28 127.5 94 61.7
Sabra19G0061000 Salix brachista HOM05D004639 ORTHO05D005201 6.4e-28 127.5 94 61.7
SabraUnG0000100 Salix brachista HOM05D004639 ORTHO05D005201 6.4e-28 127.5 94 61.7
SabraUnG0000200 Salix brachista HOM05D004639 ORTHO05D005201 6.4e-28 127.5 94 61.7
CiPaw.15G093500 Carya illinoinensis HOM05D004639 ORTHO05D005201 5.5e-27 124.4 85 64.7
SHI25031 Sapria himalayana HOM05D004639 ORTHO05D005201 1.2e-26 123.2 98 55.1
BcaC08g44553 Brassica carinata HOM05D004639 ORTHO05D005201 2.7e-26 122.1 90 63.3
Eucgr.B01580 Eucalyptus grandis HOM05D004639 ORTHO05D005201 2.7e-26 122.1 93 58.1
Lj2g0018447 Lotus japonicus HOM05D004639 ORTHO05D005201 1.0e-25 120.2 104 51.9
Mapoly0049s0024 Marchantia polymorpha HOM05D004639 ORTHO05D005201 1.0e-25 120.2 95 55.8
HPP92_007024 Vanilla planifolia HOM05D004639 ORTHO05D005201 1.3e-25 119.8 99 52.5
Pp3c15_4380 Physcomitrium patens HOM05D004639 ORTHO05D005201 5.1e-25 117.9 95 55.8
CBR_g51322 Chara braunii HOM05D004639 ORTHO05D005201 1.1e-24 116.7 95 53.7
HPP92_015991 Vanilla planifolia HOM05D004639 ORTHO05D005201 1.9e-24 115.9 99 51.5
CDE02G2478 Ceratophyllum demersum HOM05D004639 ORTHO05D005201 2.1e-23 112.5 101 55.4
Gohir.D02G140450 Gossypium hirsutum HOM05D004639 ORTHO05D005201 2.8e-23 112.1 76 64.5
EL10As7g23724 Beta vulgaris HOM05D004639 ORTHO05D005201 3.7e-23 111.7 95 51.6
AUR62032895 Chenopodium quinoa HOM05D004639 ORTHO05D005201 6.2e-23 110.9 78 61.5
Hund25534 Selenicereus undatus HOM05D004639 ORTHO05D005201 6.2e-23 110.9 77 63.6
CSS0047186 Camellia sinensis var. sinensis HOM05D004639 ORTHO05D005201 8.2e-23 110.5 77 64.9
Sabra19G0060300 Salix brachista HOM05D004639 ORTHO05D005201 6.9e-22 107.5 78 62.8
Gorai.005G156200 Gossypium raimondii HOM05D004639 ORTHO05D005201 1.2e-21 106.7 76 61.8
HPP92_007076 Vanilla planifolia HOM05D004639 ORTHO05D005201 7.6e-21 104.0 87 52.9
Potri.014G187766 Populus trichocarpa HOM05D004639 ORTHO05D005201 1.0e-20 103.6 98 52.0
QL93p0107_0438 Quercus lobata HOM05D004639 ORTHO05D005201 1.3e-20 103.2 56 75.0
Nitab4.5_0000843g0080 Nicotiana tabacum HOM05D004639 ORTHO05D005201 3.2e-19 98.6 62 75.8
Duzib235G0802 Durio zibethinus HOM05D004639 ORTHO05D005201 4.2e-19 98.2 84 59.5
SMO334G0025 Selaginella moellendorffii HOM05D004639 ORTHO05D005201 2.1e-18 95.9 98 43.9
PRCOL_00006916 Prasinoderma coloniale HOM05D004639 ORTHO05D005201 1.0e-17 93.6 96 47.9
Os09g0101100 Oryza sativa ssp. japonica HOM05D004639 ORTHO05D005201 1.3e-17 93.2 96 42.7
unitig_22.g6364 Utricularia gibba HOM05D004639 ORTHO05D005201 4.3e-16 88.2 68 60.3
C06p20180 Brassica napus HOM05D004639 ORTHO05D005201 7.4e-16 87.4 43 81.4
BolC6t37199H Brassica oleracea HOM05D004639 ORTHO05D005201 7.4e-16 87.4 43 81.4
Zm00001eb264110 Zea mays HOM05D004639 ORTHO05D005201 1.3e-15 86.7 90 41.1
BcaC06g36658 Brassica carinata HOM05D004639 ORTHO05D005201 2.2e-15 85.9 62 64.5
Sc22g0004560 Simmondsia chinensis HOM05D004639 ORTHO05D005201 2.2e-15 85.9 64 57.8
FAN23G0569 Fragaria x ananassa HOM05D004639 ORTHO05D005201 8.2e-15 84.0 62 66.1
Sed0017627 Sechium edule HOM05D004639 ORTHO05D005201 4.1e-14 81.6 65 58.5
Medtr6g034730 Medicago truncatula HOM05D004639 ORTHO05D005201 5.9e-13 77.8 63 57.1
CBR_g37349 Chara braunii HOM05D000004 ORTHO05D000002 1.1e-11 73.6 64 54.7
Cre05.g234250 Chlamydomonas reinhardtii HOM05D004639 ORTHO05D005201 4.2e-11 71.6 94 36.2
unitig_22.g6365 Utricularia gibba HOM05D004639 ORTHO05D005201 5.5e-11 71.2 62 58.1
COL.COLO4_05916 Corchorus olitorius HOM05D004639 ORTHO05D005201 7.9e-10 67.4 52 57.7
SHI28181 Sapria himalayana HOM05D000002 ORTHO05D000047 1.1e-06 57.0 37 62.2
HPP92_015994 Vanilla planifolia HOM05D004639 ORTHO05D005201 5.3e-06 54.7 37 62.2


User provided reference genes

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