Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv08224 Davidia involucrata HOM05D051781 ORTHO05D178724 1.4e-69 266.2 133 100.0
Dinv08225 Davidia involucrata HOM05D051781 ORTHO05D184397 1.5e-44 183.0 99 94.9
Dinv22487 Davidia involucrata HOM05D005044 ORTHO05D006799 8.6e-11 70.9 40 82.5
Actinidia24932 Actinidia chinensis HOM05D005044 ORTHO05D006799 4.3e-10 68.6 40 80.0
CiPaw.04G181200 Carya illinoinensis HOM05D005044 ORTHO05D006799 4.3e-10 68.6 32 93.8
Ca_08641_v3 Cicer arietinum L. HOM05D005044 ORTHO05D006799 4.3e-10 68.6 32 93.8
Ciclev10019527m.g Citrus clementina HOM05D005044 ORTHO05D006799 4.3e-10 68.6 32 93.8
Cc01_g18890 Coffea canephora HOM05D005044 ORTHO05D006799 4.3e-10 68.6 40 80.0
COL.COLO4_06089 Corchorus olitorius HOM05D005044 ORTHO05D006799 4.3e-10 68.6 32 93.8
DCAR_018443 Daucus carota HOM05D005044 ORTHO05D006799 4.3e-10 68.6 32 93.8
Duzib133G0403 Durio zibethinus HOM05D005044 ORTHO05D006799 4.3e-10 68.6 32 93.8
FvH4_2g22590 Fragaria vesca HOM05D005044 ORTHO05D006799 4.3e-10 68.6 32 93.8
FAN15G1010 Fragaria x ananassa HOM05D005044 ORTHO05D006799 4.3e-10 68.6 32 93.8
FAN20G1248 Fragaria x ananassa HOM05D005044 ORTHO05D006799 4.3e-10 68.6 32 93.8
FAN24G0661 Fragaria x ananassa HOM05D005044 ORTHO05D006799 4.3e-10 68.6 32 93.8
Glyma.03G158300 Glycine max HOM05D005044 ORTHO05D006799 4.3e-10 68.6 32 93.8
Glyma.19G160700 Glycine max HOM05D005044 ORTHO05D006799 4.3e-10 68.6 32 93.8
Gohir.A11G127000 Gossypium hirsutum HOM05D005044 ORTHO05D006799 4.3e-10 68.6 32 93.8
Gohir.D11G132200 Gossypium hirsutum HOM05D005044 ORTHO05D006799 4.3e-10 68.6 32 93.8
Gorai.007G141400 Gossypium raimondii HOM05D005044 ORTHO05D006799 4.3e-10 68.6 32 93.8
Lalb_Chr01g0019911 Lupinus albus HOM05D005044 ORTHO05D006799 4.3e-10 68.6 32 93.8
Lalb_Chr25g0290121 Lupinus albus HOM05D005044 ORTHO05D006799 4.3e-10 68.6 32 93.8
Medtr7g096040 Medicago truncatula HOM05D005044 ORTHO05D006799 4.3e-10 68.6 32 93.8
Nn1g02531 Nelumbo nucifera HOM05D005044 ORTHO05D006799 4.3e-10 68.6 32 93.8
Nitab4.5_0000393g0110 Nicotiana tabacum HOM05D005044 ORTHO05D006799 4.3e-10 68.6 32 93.8
Nitab4.5_0004093g0010 Nicotiana tabacum HOM05D005044 ORTHO05D006799 4.3e-10 68.6 32 93.8
Peaxi162Scf01826g00015 Petunia axillaris HOM05D005044 ORTHO05D006799 4.3e-10 68.6 32 93.8
Phvul.001G156000 Phaseolus vulgaris HOM05D005044 ORTHO05D006799 4.3e-10 68.6 32 93.8
Psat3g061080 Pisum sativum HOM05D005044 ORTHO05D006799 4.3e-10 68.6 32 93.8
PGR044G0510 Punica granatum HOM05D005044 ORTHO05D006799 4.3e-10 68.6 32 93.8
QL12p042617 Quercus lobata HOM05D005044 ORTHO05D006799 4.3e-10 68.6 32 93.8
SHI09971 Sapria himalayana HOM05D005044 ORTHO05D006799 4.3e-10 68.6 32 93.8
Sed0025057 Sechium edule HOM05D005044 ORTHO05D006799 4.3e-10 68.6 32 93.8
Solyc10g045390.2 Solanum lycopersicum HOM05D005044 ORTHO05D006799 4.3e-10 68.6 32 93.8
Sopen10g015430 Solanum pennellii HOM05D005044 ORTHO05D006799 4.3e-10 68.6 32 93.8
SGA_v2.0_scaffold80G25918 Striga asiatica HOM05D005044 ORTHO05D006799 4.3e-10 68.6 32 93.8
TPR.G19106 Trifolium pratense HOM05D005044 ORTHO05D006799 4.3e-10 68.6 32 93.8
TWI75G1122 Tripterygium wilfordii HOM05D005044 ORTHO05D006799 4.3e-10 68.6 32 93.8
HPP92_024856 Vanilla planifolia HOM05D005044 ORTHO05D006799 4.3e-10 68.6 32 93.8
VMungo1383G1961 Vigna mungo HOM05D005044 ORTHO05D006799 4.3e-10 68.6 32 93.8
GSVIVG01000712001 Vitis vinifera HOM05D005044 ORTHO05D006799 4.3e-10 68.6 32 93.8
Ah.11g050040 Amaranthus hybridus HOM05D005044 ORTHO05D006799 5.6e-10 68.2 41 75.6
Eucgr.K03316 Eucalyptus grandis HOM05D005044 ORTHO05D006799 5.6e-10 68.2 32 90.6
Rhsim01G0270400 Rhododendron simsii HOM05D005044 ORTHO05D006799 7.3e-10 67.8 32 90.6
vmacro14878 Vaccinium macrocarpon HOM05D005044 ORTHO05D006799 7.3e-10 67.8 32 90.6
EL10Ac5g10465 Beta vulgaris HOM05D005044 ORTHO05D006799 9.5e-10 67.4 41 75.6
AUR62011952 Chenopodium quinoa HOM05D005044 ORTHO05D006799 9.5e-10 67.4 41 75.6
Lj1A57T46 Lonicera japonica HOM05D005044 ORTHO05D006799 9.5e-10 67.4 32 90.6
MD10G1193500 Malus domestica HOM05D005044 ORTHO05D006799 9.5e-10 67.4 32 90.6
PSO210G5903 Papaver somniferum HOM05D005044 ORTHO05D006799 9.5e-10 67.4 32 90.6
PSO832G0444 Papaver somniferum HOM05D005044 ORTHO05D006799 9.5e-10 67.4 32 90.6
Prupe.8G232900 Prunus persica HOM05D005044 ORTHO05D006799 9.5e-10 67.4 32 90.6
ClCG01G025700 Citrullus lanatus HOM05D005044 ORTHO05D006799 1.2e-09 67.0 32 90.6
MELO3C007015.2 Cucumis melo HOM05D005044 ORTHO05D006799 1.2e-09 67.0 32 90.6
CsaV3_6G052930 Cucumis sativus L. HOM05D005044 ORTHO05D006799 1.2e-09 67.0 32 90.6
ECA247G2181 Erigeron canadensis HOM05D005044 ORTHO05D006799 1.6e-09 66.6 32 90.6
Eucgr.K03317 Eucalyptus grandis HOM05D005044 ORTHO05D006799 1.6e-09 66.6 32 90.6
HanXRQChr10g0281481 Helianthus annuus HOM05D005044 ORTHO05D006799 1.6e-09 66.6 32 90.6
Manes.01G202300 Manihot esculenta HOM05D005044 ORTHO05D006799 1.6e-09 66.6 32 90.6
Sc05g0001060 Simmondsia chinensis HOM05D005044 ORTHO05D006799 1.6e-09 66.6 32 90.6
Thecc.01G268500 Theobroma cacao HOM05D005044 ORTHO05D006799 1.6e-09 66.6 32 90.6
Cpa.g.sc52.102 Carica papaya HOM05D005044 ORTHO05D006799 2.1e-09 66.2 32 90.6
FAN27G2477 Fragaria x ananassa HOM05D005044 ORTHO05D006799 2.1e-09 66.2 32 90.6
Aqoxy2G03504 Aquilegia oxysepala HOM05D005044 ORTHO05D006799 2.8e-09 65.9 32 90.6
unitig_22.g5954 Utricularia gibba HOM05D005044 ORTHO05D006799 2.8e-09 65.9 40 75.0
MSTRG.17471 Avicennia marina HOM05D005044 ORTHO05D006799 3.6e-09 65.5 32 87.5
Cfa002318 Carpinus fangiana HOM05D005044 ORTHO05D006799 3.6e-09 65.5 32 90.6
Haze_24523 Corylus avellana HOM05D005044 ORTHO05D006799 3.6e-09 65.5 32 90.6
Lj1g0021498 Lotus japonicus HOM05D005044 ORTHO05D006799 3.6e-09 65.5 32 90.6
Manes.05G083800 Manihot esculenta HOM05D005044 ORTHO05D006799 3.6e-09 65.5 32 90.6
Medtr8g062330 Medicago truncatula HOM05D005044 ORTHO05D006799 3.6e-09 65.5 32 87.5
Oeu018178.1 Olea europaea HOM05D005044 ORTHO05D006799 3.6e-09 65.5 32 90.6
Potri.005G217400 Populus trichocarpa HOM05D005044 ORTHO05D006799 3.6e-09 65.5 32 90.6
RcHm_v2.0_Chr6g0289651 Rosa chinensis HOM05D005044 ORTHO05D006799 3.6e-09 65.5 32 90.6
Sabra05G0166600 Salix brachista HOM05D005044 ORTHO05D006799 3.6e-09 65.5 32 90.6
THA.LOC104804692 Tarenaya hassleriana HOM05D005044 ORTHO05D006799 3.6e-09 65.5 41 70.7
TAR365G0173 Trochodendron aralioides HOM05D005044 ORTHO05D006799 3.6e-09 65.5 32 87.5
ATR0665G603 Amborella trichopoda HOM05D005044 ORTHO05D006799 4.7e-09 65.1 32 87.5
BcaB01g00175 Brassica carinata HOM05D005044 ORTHO05D006799 4.7e-09 65.1 41 68.3
CSS0043243 Camellia sinensis var. sinensis HOM05D005044 ORTHO05D006799 4.7e-09 65.1 32 87.5
AUR62032265 Chenopodium quinoa HOM05D005044 ORTHO05D006799 4.7e-09 65.1 41 73.2
Dinv34561 Davidia involucrata HOM05D005044 ORTHO05D006799 4.7e-09 65.1 32 90.6
Migut.N02179 Erythranthe guttata HOM05D005044 ORTHO05D006799 4.7e-09 65.1 32 84.4
Thhalv10010247m.g Eutrema salsugineum HOM05D005044 ORTHO05D006799 4.7e-09 65.1 41 70.7
Lsat_1_v5_gn_9_8160 Lactuca sativa HOM05D005044 ORTHO05D006799 6.1e-09 64.7 32 87.5
Rhsim13G0030500 Rhododendron simsii HOM05D005044 ORTHO05D006799 6.1e-09 64.7 32 90.6
SEGI_32822 Sequoiadendron giganteum HOM05D005044 ORTHO05D006799 6.1e-09 64.7 32 87.5
vmacro02624 Vaccinium macrocarpon HOM05D005044 ORTHO05D006799 6.1e-09 64.7 32 90.6
Atru.chr5.1554 Acer truncatum HOM05D005044 ORTHO05D006799 8.0e-09 64.3 32 87.5
CDE07G1918 Ceratophyllum demersum HOM05D005044 ORTHO05D006799 8.0e-09 64.3 32 81.2
MBI04_g08415_MAGBIO Magnolia biondii HOM05D005044 ORTHO05D006799 8.0e-09 64.3 32 87.5
PSO210G1356 Papaver somniferum HOM05D005044 ORTHO05D006799 8.0e-09 64.3 32 84.4
PSO461G0059 Papaver somniferum HOM05D005044 ORTHO05D006799 8.0e-09 64.3 32 84.4
Potri.002G045900 Populus trichocarpa HOM05D005044 ORTHO05D006799 8.0e-09 64.3 32 87.5
Zm00001eb223040 Zea mays HOM05D005044 ORTHO05D006799 8.0e-09 64.3 32 84.4
AL5G35690 Arabidopsis lyrata HOM05D005044 ORTHO05D006799 1.4e-08 63.5 41 68.3
AT3G54610 Arabidopsis thaliana HOM05D005044 ORTHO05D006799 1.4e-08 63.5 41 68.3
Carub.0005s2121 Capsella rubella HOM05D005044 ORTHO05D006799 1.4e-08 63.5 41 68.3
CARHR164510 Cardamine hirsuta HOM05D005044 ORTHO05D006799 1.4e-08 63.5 41 68.3
Sp5g07850 Schrenkiella parvula HOM05D005044 ORTHO05D006799 1.4e-08 63.5 41 68.3
Aa31sc64G50 Aethionema arabicum HOM05D005044 ORTHO05D006799 1.8e-08 63.2 32 81.2
Sabra02G0036800 Salix brachista HOM05D005044 ORTHO05D006799 3.1e-08 62.4 32 84.4
Hund09563 Selenicereus undatus HOM05D005044 ORTHO05D006799 3.1e-08 62.4 32 84.4
BcaB02g08448 Brassica carinata HOM05D005044 ORTHO05D006799 6.8e-08 61.2 41 65.9
Mapoly0187s0003 Marchantia polymorpha HOM05D005044 ORTHO05D006799 6.8e-08 61.2 32 81.2
Os10g0415900 Oryza sativa ssp. japonica HOM05D005044 ORTHO05D006799 6.8e-08 61.2 32 81.2
BcaC02g09057 Brassica carinata HOM05D005044 ORTHO05D006799 8.9e-08 60.8 41 65.9
A04p05210 Brassica napus HOM05D005044 ORTHO05D006799 8.9e-08 60.8 41 65.9
C04p37940 Brassica napus HOM05D005044 ORTHO05D006799 8.9e-08 60.8 41 65.9
BolC4t25370H Brassica oleracea HOM05D005044 ORTHO05D006799 8.9e-08 60.8 41 65.9
BraA04t16230Z Brassica rapa HOM05D005044 ORTHO05D006799 8.9e-08 60.8 41 65.9
Aqoxy5G00364 Aquilegia oxysepala HOM05D005044 ORTHO05D006799 3.4e-07 58.9 32 78.1
TWI12G0479 Tripterygium wilfordii HOM05D005044 ORTHO05D006799 7.5e-07 57.8 32 84.4
CBR_g46433 Chara braunii HOM05D005044 ORTHO05D006799 9.8e-07 57.4 40 65.0
Pp3c2_9560 Physcomitrium patens HOM05D005044 ORTHO05D006799 1.3e-06 57.0 32 75.0
SMO367G0544 Selaginella moellendorffii HOM05D005044 ORTHO05D006799 8.3e-06 54.3 41 61.0


User provided reference genes

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