Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv08223 Davidia involucrata HOM05D004106 ORTHO05D004381 5.7e-104 380.9 197 100.0
Dinv08178 Davidia involucrata HOM05D004106 ORTHO05D004381 2.4e-94 349.0 197 91.4
Actinidia14131 Actinidia chinensis HOM05D004106 ORTHO05D004381 1.8e-81 306.2 197 82.7
TAR626G0743 Trochodendron aralioides HOM05D004106 ORTHO05D004381 1.9e-78 296.2 194 83.0
TAR383G0918 Trochodendron aralioides HOM05D004106 ORTHO05D004381 1.6e-77 293.1 194 82.5
EL10Ac2g02497 Beta vulgaris HOM05D004106 ORTHO05D004381 7.6e-72 274.2 198 77.3
Oeu006863.1 Olea europaea HOM05D004106 ORTHO05D004381 9.9e-72 273.9 201 75.6
Atru.chr7.22 Acer truncatum HOM05D004106 ORTHO05D004381 4.9e-71 271.6 195 78.5
Potri.018G105600 Populus trichocarpa HOM05D004106 ORTHO05D004381 1.9e-70 269.6 195 75.9
TWI63G0696 Tripterygium wilfordii HOM05D004106 ORTHO05D004381 5.4e-70 268.1 198 74.2
Nitab4.5_0002011g0110 Nicotiana tabacum HOM05D004106 ORTHO05D004381 9.3e-70 267.3 199 76.9
arahy.Tifrunner.gnm1.ann1.J1V5JT Arachis hypogaea HOM05D004106 ORTHO05D004381 1.2e-69 266.9 195 75.9
GSVIVG01023623001 Vitis vinifera HOM05D004106 ORTHO05D004381 2.1e-69 266.2 195 74.9
PSO339G2511 Papaver somniferum HOM05D004106 ORTHO05D004381 3.5e-69 265.4 195 76.4
Hund02987 Selenicereus undatus HOM05D004106 ORTHO05D004381 4.6e-69 265.0 197 74.1
Oeu048547.1 Olea europaea HOM05D004106 ORTHO05D004381 1.0e-68 263.8 200 75.5
Manes.14G144700 Manihot esculenta HOM05D004106 ORTHO05D004381 3.9e-68 261.9 195 75.9
PSO384G4038 Papaver somniferum HOM05D004106 ORTHO05D004381 3.9e-68 261.9 195 75.9
QL02p093501 Quercus lobata HOM05D004106 ORTHO05D004381 5.1e-68 261.5 194 74.7
Ciclev10009489m.g Citrus clementina HOM05D004106 ORTHO05D004381 6.6e-68 261.2 195 77.4
Nitab4.5_0003563g0010 Nicotiana tabacum HOM05D004106 ORTHO05D004381 6.6e-68 261.2 199 76.4
Sopen08g002730 Solanum pennellii HOM05D004106 ORTHO05D004381 1.5e-67 260.0 198 74.7
arahy.Tifrunner.gnm1.ann1.U84FQB Arachis hypogaea HOM05D004106 ORTHO05D004381 3.3e-67 258.8 195 74.4
Manes.03G008200 Manihot esculenta HOM05D004106 ORTHO05D004381 4.3e-67 258.5 192 75.0
MBI15_g18237_MAGBIO Magnolia biondii HOM05D004106 ORTHO05D004381 5.6e-67 258.1 195 73.8
CANSAT11G1220 Cannabis sativa HOM05D004106 ORTHO05D004381 9.6e-67 257.3 187 76.5
ATR0580G427 Amborella trichopoda HOM05D004106 ORTHO05D004381 1.6e-66 256.5 192 73.4
TWI34G1622 Tripterygium wilfordii HOM05D004106 ORTHO05D004381 2.1e-66 256.1 195 72.8
CAN.G353.7 Capsicum annuum HOM05D004106 ORTHO05D004381 2.8e-66 255.8 198 74.7
Hund25620 Selenicereus undatus HOM05D004106 ORTHO05D004381 2.8e-66 255.8 168 79.2
PGSC0003DMG400026299 Solanum tuberosum HOM05D004106 ORTHO05D004381 2.8e-66 255.8 198 73.2
Glyma.12G156200 Glycine max HOM05D004106 ORTHO05D004381 3.6e-66 255.4 198 73.7
VMungo1080G0447 Vigna mungo HOM05D004106 ORTHO05D004381 4.8e-66 255.0 198 73.7
Glyma.06G225800 Glycine max HOM05D004106 ORTHO05D004381 6.2e-66 254.6 197 72.6
Gohir.A07G027300 Gossypium hirsutum HOM05D004106 ORTHO05D004381 6.2e-66 254.6 194 75.8
Gorai.001G032700 Gossypium raimondii HOM05D004106 ORTHO05D004381 6.2e-66 254.6 194 75.8
CSS0032495 Camellia sinensis var. sinensis HOM05D004106 ORTHO05D004381 8.1e-66 254.2 144 92.4
Phvul.005G005700 Phaseolus vulgaris HOM05D004106 ORTHO05D004381 1.1e-65 253.8 198 73.2
Duzib168G0532 Durio zibethinus HOM05D004106 ORTHO05D004381 2.4e-65 252.7 194 75.3
Solyc08g006780.3 Solanum lycopersicum HOM05D004106 ORTHO05D004381 2.4e-65 252.7 198 73.7
MSTRG.1632 Avicennia marina HOM05D004106 ORTHO05D004381 9.0e-65 250.8 198 71.7
Lalb_Chr07g0179881 Lupinus albus HOM05D004106 ORTHO05D004381 9.0e-65 250.8 195 72.8
Cc06_g14830 Coffea canephora HOM05D004106 ORTHO05D004381 1.5e-64 250.0 193 73.1
Actinidia23107 Actinidia chinensis HOM05D004106 ORTHO05D004381 2.6e-64 249.2 197 71.6
HPP92_004701 Vanilla planifolia HOM05D004106 ORTHO05D004381 2.6e-64 249.2 171 78.4
Cpa.g.sc46.167 Carica papaya HOM05D004106 ORTHO05D004381 3.4e-64 248.8 196 74.5
Peaxi162Scf00045g02039 Petunia axillaris HOM05D004106 ORTHO05D004381 3.4e-64 248.8 201 74.6
unitig_749.g13818 Utricularia gibba HOM05D004106 ORTHO05D004381 9.9e-64 247.3 198 69.7
ClCG06G012460 Citrullus lanatus HOM05D004106 ORTHO05D004381 1.3e-63 246.9 194 71.1
Sed0000106 Sechium edule HOM05D004106 ORTHO05D004381 1.3e-63 246.9 195 71.8
CiPaw.15G167000 Carya illinoinensis HOM05D004106 ORTHO05D004381 2.2e-63 246.1 195 71.8
Prupe.1G394300 Prunus persica HOM05D004106 ORTHO05D004381 2.2e-63 246.1 190 73.7
CsaV3_1G029020 Cucumis sativus L. HOM05D004106 ORTHO05D004381 6.4e-63 244.6 194 71.6
Lalb_Chr13g0300831 Lupinus albus HOM05D004106 ORTHO05D004381 8.4e-63 244.2 195 72.3
MBI14_g09102_MAGBIO Magnolia biondii HOM05D004106 ORTHO05D004381 8.4e-63 244.2 180 75.6
Prupe.7G264300 Prunus persica HOM05D004106 ORTHO05D004381 8.4e-63 244.2 184 74.5
Lj4g0010746 Lotus japonicus HOM05D004106 ORTHO05D004381 1.4e-62 243.4 194 73.2
RcHm_v2.0_Chr6g0299371 Rosa chinensis HOM05D004106 ORTHO05D004381 2.4e-62 242.7 193 71.0
Gohir.A05G053000 Gossypium hirsutum HOM05D004106 ORTHO05D004381 5.4e-62 241.5 194 71.6
Lj6g0027633 Lotus japonicus HOM05D004106 ORTHO05D004381 7.1e-62 241.1 192 69.8
THA.LOC104803919 Tarenaya hassleriana HOM05D004106 ORTHO05D004381 7.1e-62 241.1 154 86.4
COL.COLO4_18821 Corchorus olitorius HOM05D004106 ORTHO05D004381 9.3e-62 240.7 196 72.4
FAN27G3303 Fragaria x ananassa HOM05D004106 ORTHO05D004381 1.2e-61 240.4 190 73.7
Duzib150G0841 Durio zibethinus HOM05D004106 ORTHO05D004381 1.6e-61 240.0 193 72.0
MD08G1056000 Malus domestica HOM05D004106 ORTHO05D004381 1.6e-61 240.0 191 72.3
FvH4_2g41160 Fragaria vesca HOM05D004106 ORTHO05D004381 2.7e-61 239.2 190 73.2
Gohir.D05G054601 Gossypium hirsutum HOM05D004106 ORTHO05D004381 2.7e-61 239.2 194 71.1
Gorai.009G056300 Gossypium raimondii HOM05D004106 ORTHO05D004381 2.7e-61 239.2 194 71.1
SGA_v2.0_scaffold4G02174 Striga asiatica HOM05D004106 ORTHO05D004381 3.5e-61 238.8 204 71.1
FAN15G2986 Fragaria x ananassa HOM05D004106 ORTHO05D004381 6.0e-61 238.0 190 73.2
Medtr0380s0040 Medicago truncatula HOM05D004106 ORTHO05D004381 6.0e-61 238.0 194 70.1
Migut.E01458 Erythranthe guttata HOM05D004106 ORTHO05D004381 1.0e-60 237.3 165 78.8
Solyc12g009980.2 Solanum lycopersicum HOM05D004106 ORTHO05D004381 1.3e-60 236.9 194 69.6
THA.LOC104819993 Tarenaya hassleriana HOM05D004106 ORTHO05D004381 1.3e-60 236.9 180 74.4
CDE02G1701 Ceratophyllum demersum HOM05D004106 ORTHO05D004381 2.3e-60 236.1 198 68.7
PGSC0003DMG400007906 Solanum tuberosum HOM05D004106 ORTHO05D004381 2.3e-60 236.1 194 69.1
Eucgr.C02498 Eucalyptus grandis HOM05D004106 ORTHO05D004381 3.9e-60 235.3 173 75.7
Ca_21133_v3 Cicer arietinum L. HOM05D004106 ORTHO05D004381 6.6e-60 234.6 191 70.2
Sopen12g004850 Solanum pennellii HOM05D004106 ORTHO05D004381 6.6e-60 234.6 198 68.2
CAN.G551.46 Capsicum annuum HOM05D004106 ORTHO05D004381 8.7e-60 234.2 194 68.6
Eucgr.C02535 Eucalyptus grandis HOM05D004106 ORTHO05D004381 1.1e-59 233.8 173 75.7
Psat1g022480 Pisum sativum HOM05D004106 ORTHO05D004381 1.1e-59 233.8 193 69.4
Sabra18G0090100 Salix brachista HOM05D004106 ORTHO05D004381 9.6e-59 230.7 195 67.7
vmacro06074 Vaccinium macrocarpon HOM05D004106 ORTHO05D004381 1.3e-58 230.3 194 65.5
CDE05G2988 Ceratophyllum demersum HOM05D004106 ORTHO05D004381 1.6e-58 229.9 198 68.2
vmacro05152 Vaccinium macrocarpon HOM05D004106 ORTHO05D004381 2.8e-58 229.2 201 65.2
A08p19160 Brassica napus HOM05D004106 ORTHO05D004381 1.4e-57 226.9 151 82.8
HanXRQChr03g0065371 Helianthus annuus HOM05D004106 ORTHO05D004381 2.4e-57 226.1 194 69.1
HanXRQChr09g0244601 Helianthus annuus HOM05D004106 ORTHO05D004381 2.4e-57 226.1 198 68.2
Peaxi162Scf00062g00225 Petunia axillaris HOM05D004106 ORTHO05D004381 2.4e-57 226.1 168 75.0
Migut.K00317 Erythranthe guttata HOM05D004106 ORTHO05D004381 4.0e-57 225.3 192 65.6
Ah.10g025490 Amaranthus hybridus HOM05D004106 ORTHO05D004381 9.0e-57 224.2 173 75.7
Sp4g02930 Schrenkiella parvula HOM05D004106 ORTHO05D004381 1.2e-56 223.8 141 85.1
PGR102G1248 Punica granatum HOM05D004106 ORTHO05D004381 2.0e-56 223.0 199 65.8
AL4G14070 Arabidopsis lyrata HOM05D004106 ORTHO05D004381 2.6e-56 222.6 177 72.3
Sp7g28490 Schrenkiella parvula HOM05D004106 ORTHO05D004381 3.4e-56 222.2 151 80.1
TPR.G3593 Trifolium pratense HOM05D004106 ORTHO05D004381 3.4e-56 222.2 201 65.7
Thhalv10026346m.g Eutrema salsugineum HOM05D004106 ORTHO05D004381 4.5e-56 221.9 141 83.7
Lsat_1_v5_gn_7_50001 Lactuca sativa HOM05D004106 ORTHO05D004381 4.5e-56 221.9 201 68.2
SalBow1G1642 Salvia bowleyana HOM05D004106 ORTHO05D004381 4.5e-56 221.9 176 69.3
BraA08t33877Z Brassica rapa HOM05D004106 ORTHO05D004381 7.6e-56 221.1 140 84.3
Aa31LG2G19880 Aethionema arabicum HOM05D004106 ORTHO05D004381 9.9e-56 220.7 180 70.6
Cfa013048 Carpinus fangiana HOM05D004106 ORTHO05D004381 9.9e-56 220.7 155 78.1
ECA240G3283 Erigeron canadensis HOM05D004106 ORTHO05D004381 9.9e-56 220.7 194 67.5
CARHR184720 Cardamine hirsuta HOM05D004106 ORTHO05D004381 1.3e-55 220.3 140 84.3
A09p56640 Brassica napus HOM05D004106 ORTHO05D004381 1.7e-55 219.9 145 82.1
C08p39590 Brassica napus HOM05D004106 ORTHO05D004381 1.7e-55 219.9 145 82.1
BolC8t51532H Brassica oleracea HOM05D004106 ORTHO05D004381 1.7e-55 219.9 145 82.1
BraA09t41055Z Brassica rapa HOM05D004106 ORTHO05D004381 1.7e-55 219.9 145 82.1
Carub.0004s0318 Capsella rubella HOM05D004106 ORTHO05D004381 2.2e-55 219.5 140 83.6
MD15G1041000 Malus domestica HOM05D004106 ORTHO05D004381 2.2e-55 219.5 192 66.7
TWI32G0932 Tripterygium wilfordii HOM05D004106 ORTHO05D004381 2.2e-55 219.5 195 69.2
AT2G24020 Arabidopsis thaliana HOM05D004106 ORTHO05D004381 2.9e-55 219.2 179 70.4
BcaB03g12652 Brassica carinata HOM05D004106 ORTHO05D004381 2.9e-55 219.2 140 84.3
BcaC07g40965 Brassica carinata HOM05D004106 ORTHO05D004381 4.9e-55 218.4 144 80.6
Os02g0180200 Oryza sativa ssp. japonica HOM05D004106 ORTHO05D004381 4.9e-55 218.4 142 80.3
Medtr4g130730 Medicago truncatula HOM05D004106 ORTHO05D004381 6.4e-55 218.0 189 65.6
AT4G30620 Arabidopsis thaliana HOM05D004106 ORTHO05D004381 3.2e-54 215.7 140 83.6
TPR.G24849 Trifolium pratense HOM05D004106 ORTHO05D004381 3.2e-54 215.7 186 66.1
AL7G21520 Arabidopsis lyrata HOM05D004106 ORTHO05D004381 5.4e-54 214.9 140 83.6
BolC3t21168H Brassica oleracea HOM05D004106 ORTHO05D004381 1.6e-53 213.4 150 78.7
Carub.0007s0995 Capsella rubella HOM05D004106 ORTHO05D004381 1.6e-53 213.4 140 82.9
Aqoxy7G02464 Aquilegia oxysepala HOM05D004106 ORTHO05D004381 4.6e-53 211.8 179 69.8
Thhalv10000343m.g Eutrema salsugineum HOM05D004106 ORTHO05D004381 4.6e-53 211.8 135 83.0
Zm00001eb206700 Zea mays HOM05D004106 ORTHO05D004381 7.9e-53 211.1 140 80.0
Nn8g39925 Nelumbo nucifera HOM05D004106 ORTHO05D004381 1.0e-52 210.7 195 63.1
Aqoxy7G02301 Aquilegia oxysepala HOM05D004106 ORTHO05D004381 1.8e-52 209.9 115 94.8
Psat4g009640 Pisum sativum HOM05D004106 ORTHO05D004381 1.5e-51 206.8 193 62.2
MELO3C010214.2 Cucumis melo HOM05D004106 ORTHO05D004381 5.6e-51 204.9 173 67.6
Haze_21409 Corylus avellana HOM05D004106 ORTHO05D004381 9.6e-51 204.1 112 95.5
Thecc.09G028700 Theobroma cacao HOM05D004106 ORTHO05D004381 2.1e-50 203.0 162 71.0
AUR62024802 Chenopodium quinoa HOM05D004106 ORTHO05D004381 2.8e-50 202.6 115 93.0
AUR62032418 Chenopodium quinoa HOM05D004106 ORTHO05D004381 2.8e-50 202.6 115 93.0
Sc09g0010670 Simmondsia chinensis HOM05D004106 ORTHO05D004381 3.7e-50 202.2 155 71.0
Rhsim07G0165600 Rhododendron simsii HOM05D004106 ORTHO05D004381 4.8e-50 201.8 349 41.0
CANSAT54G0776 Cannabis sativa HOM05D004106 ORTHO05D004381 6.2e-50 201.4 184 62.0
C03p88620 Brassica napus HOM05D004106 ORTHO05D004381 8.1e-50 201.1 140 80.0
BcaC01g01145 Brassica carinata HOM05D004106 ORTHO05D004381 2.6e-48 196.1 113 90.3
FAN20G0773 Fragaria x ananassa HOM05D004106 ORTHO05D004381 4.5e-48 195.3 190 63.7
Lalb_Chr12g0198731 Lupinus albus HOM05D004106 ORTHO05D004381 7.6e-48 194.5 113 90.3
Aa31LG7G12810 Aethionema arabicum HOM05D004106 ORTHO05D004381 4.2e-46 188.7 205 58.0
Pp3c2_35530 Physcomitrium patens HOM05D004106 ORTHO05D004381 7.1e-46 188.0 167 64.1
Nitab4.5_0002891g0090 Nicotiana tabacum HOM05D004106 ORTHO05D004381 1.3e-44 183.7 194 58.2
Pp3c1_1160 Physcomitrium patens HOM05D004106 ORTHO05D004381 2.3e-44 183.0 192 57.3
Mapoly0031s0030 Marchantia polymorpha HOM05D004106 ORTHO05D004381 3.0e-44 182.6 140 67.9
Nitab4.5_0008875g0050 Nicotiana tabacum HOM05D004106 ORTHO05D004381 3.0e-44 182.6 194 57.7
Haze_19171 Corylus avellana HOM05D004106 ORTHO05D004381 3.3e-43 179.1 111 86.5
SMO364G0386 Selaginella moellendorffii HOM05D004106 ORTHO05D004381 2.8e-42 176.0 109 81.7
Pp3c11_2360 Physcomitrium patens HOM05D004106 ORTHO05D004381 3.4e-40 169.1 143 61.5
Hma1.2p1_2680F.1_g326820 Hydrangea macrophylla HOM05D004106 ORTHO05D004381 6.5e-39 164.9 168 62.5
Zm00001eb234060 Zea mays HOM05D004106 ORTHO05D004381 3.2e-38 162.5 140 65.7
CBR_g54183 Chara braunii HOM05D004106 ORTHO05D004381 4.6e-37 158.7 148 60.1
AagrBONN_evm.TU.Sc2ySwM_228.5744 Anthoceros agrestis HOM05D004106 ORTHO05D004381 1.3e-36 157.1 115 71.3
CBR_g728 Chara braunii HOM05D004106 ORTHO05D004381 1.8e-36 156.8 113 71.7
Actinidia38669 Actinidia chinensis HOM05D004106 ORTHO05D004381 2.0e-32 143.3 158 58.2
QL02p018811 Quercus lobata HOM05D004106 ORTHO05D004381 2.2e-31 139.8 96 76.0
Gohir.D07G031300 Gossypium hirsutum HOM05D004106 ORTHO05D004381 1.2e-29 134.0 126 64.3
PRCOL_00004350 Prasinoderma coloniale HOM05D004106 ORTHO05D004381 2.0e-27 126.7 109 59.6
Cre10.g458550 Chlamydomonas reinhardtii HOM05D004106 ORTHO05D004381 4.1e-25 119.0 135 49.6
BcaB05g25007 Brassica carinata HOM05D004106 ORTHO05D004381 2.9e-23 112.8 99 65.7
BraA02t07117Z Brassica rapa HOM05D004106 ORTHO05D004381 2.9e-23 112.8 91 69.2
A02p20860 Brassica napus HOM05D004106 ORTHO05D004381 1.1e-22 110.9 85 70.6
C02p32810 Brassica napus HOM05D004106 ORTHO05D004381 4.2e-22 109.0 86 72.1
BcaC03g15698 Brassica carinata HOM05D004106 ORTHO05D004381 2.7e-21 106.3 86 70.9
BolC2t09418H Brassica oleracea HOM05D004106 ORTHO05D004381 2.7e-21 106.3 86 70.9
Peaxi162Scf00387g00211 Petunia axillaris HOM05D004106 ORTHO05D004381 4.8e-18 95.5 113 51.3
SEGI_18679 Sequoiadendron giganteum HOM05D004106 ORTHO05D004381 2.7e-13 79.7 44 93.2
BcaB01g01386 Brassica carinata HOM05D004106 ORTHO05D005755 8.0e-13 78.2 49 83.7
CARHR238490 Cardamine hirsuta HOM05D004106 ORTHO05D004381 1.8e-12 77.0 47 83.0
Lsat_1_v5_gn_7_47460 Lactuca sativa HOM05D004106 ORTHO05D002137 1.4e-09 67.4 39 84.6
Lalb_Chr12g0198741 Lupinus albus HOM05D004106 ORTHO05D004381 2.9e-07 59.7 80 46.2
AagrBONN_evm.TU.Sc2ySwM_114.14 Anthoceros agrestis HOM05D010958 ORTHO05D004381 5.5e-06 55.5 89 41.6
AagrBONN_evm.TU.Sc2ySwM_114.15 Anthoceros agrestis HOM05D010958 ORTHO05D004381 5.5e-06 55.5 89 41.6
AagrBONN_evm.TU.Sc2ySwM_340.1461 Anthoceros agrestis HOM05D010958 ORTHO05D004381 5.5e-06 55.5 89 41.6
AagrBONN_evm.TU.Sc2ySwM_344.958 Anthoceros agrestis HOM05D010958 ORTHO05D004381 5.5e-06 55.5 79 45.6
AagrBONN_evm.TU.Sc2ySwM_368.15 Anthoceros agrestis HOM05D010958 ORTHO05D004381 5.5e-06 55.5 89 41.6
AagrBONN_evm.TU.Sc2ySwM_83.9 Anthoceros agrestis HOM05D010958 ORTHO05D004381 5.5e-06 55.5 89 41.6


User provided reference genes

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