Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv08171 Davidia involucrata HOM05D008075 ORTHO05D010208 0.0e+00 1623.6 827 100.0
Rhsim08G0001000 Rhododendron simsii HOM05D008075 ORTHO05D010208 3.4e-190 669.5 838 49.9
GSVIVG01022404001 Vitis vinifera HOM05D008075 ORTHO05D010208 4.2e-172 609.4 833 47.5
CSS0037312 Camellia sinensis var. sinensis HOM05D008075 ORTHO05D010208 4.8e-168 595.9 823 47.3
TAR376G0152 Trochodendron aralioides HOM05D008075 ORTHO05D010208 1.4e-156 557.8 1141 37.1
QL10p040186 Quercus lobata HOM05D008075 ORTHO05D010208 2.5e-148 530.4 900 42.6
Cc02_g33950 Coffea canephora HOM05D008075 ORTHO05D010208 1.0e-138 498.4 837 42.2
Potri.004G140000 Populus trichocarpa HOM05D008075 ORTHO05D010208 1.4e-132 478.0 880 40.0
Nitab4.5_0005586g0040 Nicotiana tabacum HOM05D008075 ORTHO05D010208 2.8e-128 463.8 824 42.4
Sabra04G0092100 Salix brachista HOM05D008075 ORTHO05D010208 3.2e-124 450.3 906 38.4
PGSC0003DMG400022727 Solanum tuberosum HOM05D008075 ORTHO05D010208 1.2e-121 441.8 829 39.8
Solyc08g080000.3 Solanum lycopersicum HOM05D008075 ORTHO05D010208 4.8e-120 436.4 821 39.0
Sopen08g028360 Solanum pennellii HOM05D008075 ORTHO05D010208 2.4e-119 434.1 821 39.1
CiPaw.03G254600 Carya illinoinensis HOM05D008075 ORTHO05D010208 2.2e-117 427.6 545 49.5
Peaxi162Scf00658g00065 Petunia axillaris HOM05D008075 ORTHO05D010208 2.9e-117 427.2 815 40.5
Nitab4.5_0000947g0070 Nicotiana tabacum HOM05D008075 ORTHO05D010208 5.0e-117 426.4 830 40.0
Ciclev10024878m.g Citrus clementina HOM05D008075 ORTHO05D010208 1.2e-115 421.8 867 38.1
Oeu011019.1 Olea europaea HOM05D002427 ORTHO05D002818 2.2e-112 411.0 825 37.6
TWI75G0788 Tripterygium wilfordii HOM05D008075 ORTHO05D010208 4.2e-108 396.7 819 39.3
SGA_v2.0_scaffold54G19596 Striga asiatica HOM05D008075 ORTHO05D010208 8.6e-101 372.5 820 36.7
Nn1g08564 Nelumbo nucifera HOM05D008075 ORTHO05D010208 6.1e-99 366.3 569 43.9
SalBow1G7185 Salvia bowleyana HOM05D008075 ORTHO05D010208 4.9e-96 356.7 818 36.1
CAN.G630.6 Capsicum annuum HOM05D008075 ORTHO05D010208 1.2e-94 352.1 760 36.8
Glyma.05G197100 Glycine max HOM05D008075 ORTHO05D010208 5.6e-92 343.2 879 33.6
ECA233G5565 Erigeron canadensis HOM05D008075 ORTHO05D010208 2.1e-91 341.3 817 35.6
VMungo0251G2353 Vigna mungo HOM05D008075 ORTHO05D010208 6.8e-90 336.3 873 33.9
Glyma.08G004500 Glycine max HOM05D008075 ORTHO05D010208 1.7e-88 331.6 880 34.2
Manes.12G084200 Manihot esculenta HOM05D008075 ORTHO05D010208 1.4e-87 328.6 822 36.3
Lj4g0013275 Lotus japonicus HOM05D008075 ORTHO05D010208 5.4e-87 326.6 856 33.4
Phvul.002G277500 Phaseolus vulgaris HOM05D008075 ORTHO05D010208 9.2e-87 325.9 853 33.5
TPR.G33422 Trifolium pratense HOM05D008075 ORTHO05D010208 6.2e-83 313.2 900 31.7
Migut.H00807 Erythranthe guttata HOM05D008075 ORTHO05D010208 1.6e-78 298.5 825 34.8
Psat7g041720 Pisum sativum HOM05D008075 ORTHO05D010208 2.3e-77 294.7 840 32.9
Ca_17596_v3 Cicer arietinum L. HOM05D000484 ORTHO05D010208 3.9e-77 293.9 850 31.4
Medtr8g095160 Medicago truncatula HOM05D008075 ORTHO05D010208 3.9e-77 293.9 888 32.1
PSO170G3563 Papaver somniferum HOM05D008075 ORTHO05D010208 4.3e-76 290.4 823 32.0
Ah.06g191710 Amaranthus hybridus HOM05D008075 ORTHO05D010208 3.6e-75 287.3 868 31.9
PSO782G2813 Papaver somniferum HOM05D008075 ORTHO05D010208 6.2e-75 286.6 810 32.8
Nn5g27987 Nelumbo nucifera HOM05D008075 ORTHO05D010208 1.7e-72 278.5 565 37.3
EL10Ac4g08956 Beta vulgaris HOM05D008075 ORTHO05D010208 4.9e-72 276.9 835 32.7
MBI03_g11141_MAGBIO Magnolia biondii HOM05D008075 ORTHO05D010208 1.4e-71 275.4 328 50.3
Aqoxy2G00609 Aquilegia oxysepala HOM05D008075 ORTHO05D010208 2.3e-69 268.1 443 43.8
Lalb_Chr12g0202841 Lupinus albus HOM05D008075 ORTHO05D010208 1.4e-66 258.8 903 28.5
HanXRQChr15g0468991 Helianthus annuus HOM05D008075 ORTHO05D010208 3.4e-65 254.2 308 51.6
Sc09g0004370 Simmondsia chinensis HOM05D008075 ORTHO05D010208 7.6e-65 253.1 851 33.3
THA.LOC104819473 Tarenaya hassleriana HOM05D008075 ORTHO05D010208 9.9e-65 252.7 206 64.6
AUR62039042 Chenopodium quinoa HOM05D008075 ORTHO05D010208 2.9e-64 251.1 867 30.6
Hund06889 Selenicereus undatus HOM05D008075 ORTHO05D010208 3.8e-64 250.8 875 30.7
Lsat_1_v5_gn_5_69300 Lactuca sativa HOM05D008075 ORTHO05D010208 1.4e-63 248.8 378 44.4
arahy.Tifrunner.gnm1.ann1.F3CBX5 Arachis hypogaea HOM05D008075 ORTHO05D010208 1.6e-62 245.4 860 30.3
HPP92_002184 Vanilla planifolia HOM05D008075 ORTHO05D010208 9.6e-60 236.1 674 32.9
ATR0171G010 Amborella trichopoda HOM05D008075 ORTHO05D010208 1.2e-57 229.2 333 45.9
arahy.Tifrunner.gnm1.ann1.BIR6X5 Arachis hypogaea HOM05D008075 ORTHO05D010208 9.9e-57 226.1 888 29.1
Os03g0703300 Oryza sativa ssp. japonica HOM05D008075 ORTHO05D010208 1.6e-54 218.8 336 44.3
Zm00001eb054280 Zea mays HOM05D008075 ORTHO05D010208 1.5e-52 212.2 319 46.1
AUR62004796 Chenopodium quinoa HOM05D008075 ORTHO05D010208 2.1e-51 208.4 859 29.3
MSTRG.23496 Avicennia marina HOM05D008075 ORTHO05D010208 2.8e-43 181.4 666 29.9
SEGI_31365 Sequoiadendron giganteum HOM05D008075 ORTHO05D010208 3.9e-37 161.0 173 46.2
SMO266G0073 Selaginella moellendorffii HOM05D008075 ORTHO05D010208 1.1e-31 142.9 179 44.7
VMungo0251G2339 Vigna mungo HOM05D008075 ORTHO05D010208 9.4e-31 139.8 490 29.0
Mapoly0089s0038 Marchantia polymorpha HOM05D008075 ORTHO05D010208 2.1e-30 138.7 162 42.0
Pp3c6_3110 Physcomitrium patens HOM05D008075 ORTHO05D010208 9.7e-28 129.8 162 42.0
Nn5g27981 Nelumbo nucifera HOM05D008075 ORTHO05D010208 1.3e-27 129.4 100 67.0
Pp3c16_21630 Physcomitrium patens HOM05D008075 ORTHO05D010208 5.3e-26 124.0 182 39.0
Pp3c6_900 Physcomitrium patens HOM05D008075 ORTHO05D010208 1.7e-24 119.0 213 38.0
Pp3c6_920 Physcomitrium patens HOM05D008075 ORTHO05D010208 1.7e-24 119.0 213 38.0
CBR_g31168 Chara braunii HOM05D008075 ORTHO05D010208 1.1e-10 73.2 141 31.9
AagrBONN_evm.TU.Sc2ySwM_362.1056 Anthoceros agrestis HOM05D008075 ORTHO05D010208 4.1e-10 71.2 141 32.6
HanXRQChr07g0199571 Helianthus annuus HOM05D008075 ORTHO05D010208 4.1e-10 71.2 48 68.8
CBR_g10951 Chara braunii HOM05D008075 ORTHO05D010208 5.9e-09 67.4 167 28.7
HanXRQChr10g0307451 Helianthus annuus HOM05D008075 ORTHO05D010208 2.9e-08 65.1 49 63.3
Nn5g28099 Nelumbo nucifera HOM05D004492 ORTHO05D005602 9.4e-07 60.1 168 33.3


User provided reference genes

Program Settings