Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv08000 Davidia involucrata HOM05D007196 ORTHO05D009100 5.2e-60 234.2 118 100.0
Hma1.2p1_0488F.1_g163760 Hydrangea macrophylla HOM05D007196 ORTHO05D009100 1.3e-42 176.4 121 77.7
TAR375G0687 Trochodendron aralioides HOM05D007196 ORTHO05D009100 6.6e-39 164.1 118 72.0
CiPaw.03G098100 Carya illinoinensis HOM05D007196 ORTHO05D009100 1.1e-36 156.8 124 66.1
Thecc.03G163500 Theobroma cacao HOM05D007196 ORTHO05D009100 2.0e-35 152.5 122 67.2
Cfa008239 Carpinus fangiana HOM05D007196 ORTHO05D009100 2.2e-34 149.1 121 69.4
COL.COLO4_14199 Corchorus olitorius HOM05D007196 ORTHO05D009100 2.9e-34 148.7 122 66.4
Glyma.16G203100 Glycine max HOM05D007196 ORTHO05D009100 2.9e-34 148.7 121 67.8
TWI14G0139 Tripterygium wilfordii HOM05D007196 ORTHO05D009100 2.9e-34 148.7 118 65.3
Actinidia13526 Actinidia chinensis HOM05D007196 ORTHO05D009100 3.8e-34 148.3 116 69.8
CSS0025032 Camellia sinensis var. sinensis HOM05D007196 ORTHO05D009100 8.4e-34 147.1 118 66.9
vmacro06759 Vaccinium macrocarpon HOM05D007196 ORTHO05D009100 8.4e-34 147.1 119 68.9
Nitab4.5_0003984g0020 Nicotiana tabacum HOM05D007196 ORTHO05D009100 1.1e-33 146.7 118 66.1
Glyma.09G152100 Glycine max HOM05D007196 ORTHO05D009100 2.4e-33 145.6 121 67.8
GSVIVG01018482001 Vitis vinifera HOM05D007196 ORTHO05D009100 2.4e-33 145.6 98 76.5
Ciclev10006560m.g Citrus clementina HOM05D007196 ORTHO05D009100 3.2e-33 145.2 116 69.0
Manes.14G032200 Manihot esculenta HOM05D007196 ORTHO05D009100 3.2e-33 145.2 117 64.1
FAN06G4298 Fragaria x ananassa HOM05D007196 ORTHO05D009100 4.1e-33 144.8 124 63.7
FAN10G3863 Fragaria x ananassa HOM05D007196 ORTHO05D009100 5.4e-33 144.4 124 64.5
Potri.015G132500 Populus trichocarpa HOM05D007196 ORTHO05D009100 5.4e-33 144.4 79 89.9
Migut.F00414 Erythranthe guttata HOM05D007196 ORTHO05D009100 7.1e-33 144.1 96 71.9
FAN06G1802 Fragaria x ananassa HOM05D007196 ORTHO05D009100 7.1e-33 144.1 124 63.7
Phvul.004G125800 Phaseolus vulgaris HOM05D007196 ORTHO05D009100 7.1e-33 144.1 119 65.5
Potri.012G130600 Populus trichocarpa HOM05D007196 ORTHO05D009100 7.1e-33 144.1 79 89.9
RcHm_v2.0_Chr1g0375291 Rosa chinensis HOM05D007196 ORTHO05D009100 7.1e-33 144.1 126 65.1
Cpa.g.sc3.256 Carica papaya HOM05D007196 ORTHO05D009100 9.2e-33 143.7 122 64.8
Cc02_g03760 Coffea canephora HOM05D007196 ORTHO05D009100 1.2e-32 143.3 80 82.5
Duzib205G1842 Durio zibethinus HOM05D007196 ORTHO05D009100 1.6e-32 142.9 122 66.4
FAN03G0205 Fragaria x ananassa HOM05D007196 ORTHO05D009100 1.6e-32 142.9 124 63.7
Lj2g0025497 Lotus japonicus HOM05D007196 ORTHO05D009100 1.6e-32 142.9 124 64.5
Rhsim03G0172900 Rhododendron simsii HOM05D007196 ORTHO05D009100 1.6e-32 142.9 120 66.7
TWI23G0806 Tripterygium wilfordii HOM05D007196 ORTHO05D009100 1.6e-32 142.9 118 62.7
Duzib068G1365 Durio zibethinus HOM05D007196 ORTHO05D009100 2.7e-32 142.1 122 63.1
Solyc03g007030.3 Solanum lycopersicum HOM05D007196 ORTHO05D009100 6.0e-32 141.0 118 63.6
Sabra12G0098300 Salix brachista HOM05D007196 ORTHO05D009100 7.8e-32 140.6 117 65.8
PGSC0003DMG400031014 Solanum tuberosum HOM05D007196 ORTHO05D009100 7.8e-32 140.6 118 62.7
Duzib205G0862 Durio zibethinus HOM05D007196 ORTHO05D009100 1.3e-31 139.8 122 65.6
Eucgr.K00137 Eucalyptus grandis HOM05D007196 ORTHO05D009100 1.3e-31 139.8 118 64.4
Lalb_Chr19g0131261 Lupinus albus HOM05D007196 ORTHO05D009100 1.3e-31 139.8 108 66.7
Peaxi162Scf00192g00828 Petunia axillaris HOM05D007196 ORTHO05D009100 1.3e-31 139.8 81 82.7
Prupe.2G283900 Prunus persica HOM05D007196 ORTHO05D009100 1.7e-31 139.4 129 61.2
AUR62016084 Chenopodium quinoa HOM05D007196 ORTHO05D009100 6.6e-31 137.5 74 87.8
PGR142G2119 Punica granatum HOM05D007196 ORTHO05D009100 6.6e-31 137.5 78 85.9
Sopen03g003020 Solanum pennellii HOM05D007196 ORTHO05D009100 6.6e-31 137.5 118 61.9
EL10Ac3g05770 Beta vulgaris HOM05D007196 ORTHO05D009100 1.1e-30 136.7 81 80.2
FvH4_7g28320 Fragaria vesca HOM05D007196 ORTHO05D009100 1.1e-30 136.7 124 60.5
SalBow4G2038 Salvia bowleyana HOM05D007196 ORTHO05D009100 1.1e-30 136.7 82 78.0
AUR62021293 Chenopodium quinoa HOM05D007196 ORTHO05D009100 1.5e-30 136.3 74 86.5
Cc00_g08970 Coffea canephora HOM05D007196 ORTHO05D009100 1.5e-30 136.3 81 81.5
Psat1g109280 Pisum sativum HOM05D007196 ORTHO05D009100 1.5e-30 136.3 121 59.5
Sed0001882 Sechium edule HOM05D007196 ORTHO05D009100 2.5e-30 135.6 71 91.5
Gohir.D11G007600 Gossypium hirsutum HOM05D007196 ORTHO05D009100 3.3e-30 135.2 80 85.0
Gorai.007G009100 Gossypium raimondii HOM05D007196 ORTHO05D009100 3.3e-30 135.2 80 85.0
QL12p039322 Quercus lobata HOM05D007196 ORTHO05D009100 3.3e-30 135.2 149 55.0
Gohir.A11G008400 Gossypium hirsutum HOM05D007196 ORTHO05D009100 4.3e-30 134.8 80 82.5
unitig_52.g17755 Utricularia gibba HOM05D007196 ORTHO05D009100 4.3e-30 134.8 82 75.6
CAN.G1481.5 Capsicum annuum HOM05D007196 ORTHO05D009100 5.6e-30 134.4 116 63.8
MBI12_g21133_MAGBIO Magnolia biondii HOM05D007196 ORTHO05D009100 5.6e-30 134.4 117 63.2
Lsat_1_v5_gn_2_129760 Lactuca sativa HOM05D007196 ORTHO05D009100 1.2e-29 133.3 118 59.3
PSO478G0391 Papaver somniferum HOM05D007196 ORTHO05D009100 1.2e-29 133.3 69 88.4
CARHR264580 Cardamine hirsuta HOM05D007196 ORTHO05D009100 2.8e-29 132.1 122 58.2
HanXRQChr07g0206311 Helianthus annuus HOM05D007196 ORTHO05D009100 2.8e-29 132.1 117 62.4
MD01G1187500 Malus domestica HOM05D007196 ORTHO05D009100 4.7e-29 131.3 125 62.4
arahy.Tifrunner.gnm1.ann1.S0TT2Y Arachis hypogaea HOM05D007196 ORTHO05D009100 6.2e-29 131.0 87 77.0
Carub.0008s1174 Capsella rubella HOM05D007196 ORTHO05D009100 6.2e-29 131.0 121 60.3
ECA238G2893 Erigeron canadensis HOM05D007196 ORTHO05D009100 6.2e-29 131.0 84 79.8
Aqoxy7G00560 Aquilegia oxysepala HOM05D007196 ORTHO05D009100 8.1e-29 130.6 117 61.5
CANSAT21G1841 Cannabis sativa HOM05D007196 ORTHO05D009100 8.1e-29 130.6 87 75.9
MELO3C005405.2 Cucumis melo HOM05D007196 ORTHO05D009100 8.1e-29 130.6 107 68.2
Dinv28524 Davidia involucrata HOM05D007196 ORTHO05D009100 1.4e-28 129.8 87 74.7
AT5G51720 Arabidopsis thaliana HOM05D007196 ORTHO05D009100 1.8e-28 129.4 121 58.7
THA.LOC104811505 Tarenaya hassleriana HOM05D007196 ORTHO05D009100 2.4e-28 129.0 83 79.5
AL8G25980 Arabidopsis lyrata HOM05D007196 ORTHO05D009100 3.1e-28 128.6 107 61.7
CsaV3_5G005490 Cucumis sativus L. HOM05D007196 ORTHO05D009100 4.0e-28 128.3 107 66.4
CDE02G2935 Ceratophyllum demersum HOM05D007196 ORTHO05D009100 5.2e-28 127.9 117 55.6
TPR.G27717 Trifolium pratense HOM05D007196 ORTHO05D009100 5.2e-28 127.9 121 58.7
Atru.chr1.612 Acer truncatum HOM05D007196 ORTHO05D009100 8.9e-28 127.1 121 60.3
DCAR_018131 Daucus carota HOM05D007196 ORTHO05D009100 1.5e-27 126.3 72 81.9
Zm00001eb320190 Zea mays HOM05D007196 ORTHO05D009100 2.0e-27 125.9 80 78.8
BcaB08g35520 Brassica carinata HOM05D007196 ORTHO05D009100 3.4e-27 125.2 80 76.2
A10p09580 Brassica napus HOM05D007196 ORTHO05D009100 3.4e-27 125.2 80 76.2
BraA10t43033Z Brassica rapa HOM05D007196 ORTHO05D009100 3.4e-27 125.2 80 76.2
ClCG01G005210 Citrullus lanatus HOM05D007196 ORTHO05D009100 3.4e-27 125.2 78 76.9
BcaC04g20641 Brassica carinata HOM05D007196 ORTHO05D009100 4.4e-27 124.8 80 76.2
C09p41140 Brassica napus HOM05D007196 ORTHO05D009100 4.4e-27 124.8 80 76.2
BolC9t56992H Brassica oleracea HOM05D007196 ORTHO05D009100 4.4e-27 124.8 80 76.2
Medtr0050s0180 Medicago truncatula HOM05D007196 ORTHO05D009100 4.4e-27 124.8 121 55.4
Sp6g13940 Schrenkiella parvula HOM05D007196 ORTHO05D009100 4.4e-27 124.8 80 75.0
Thhalv10015074m.g Eutrema salsugineum HOM05D007196 ORTHO05D009100 7.6e-27 124.0 81 74.1
CDE11G1107 Ceratophyllum demersum HOM05D007196 ORTHO05D009100 1.3e-26 123.2 116 56.0
Os07g0467200 Oryza sativa ssp. japonica HOM05D007196 ORTHO05D009100 1.3e-26 123.2 74 81.1
Mapoly0132s0038 Marchantia polymorpha HOM05D007196 ORTHO05D009100 3.8e-26 121.7 84 72.6
HPP92_007351 Vanilla planifolia HOM05D007196 ORTHO05D009100 1.1e-25 120.2 120 60.0
SMO367G0606 Selaginella moellendorffii HOM05D003621 ORTHO05D004259 2.4e-25 119.0 91 67.0
PSO782G2298 Papaver somniferum HOM05D007196 ORTHO05D009100 4.2e-25 118.2 76 75.0
AagrBONN_evm.TU.Sc2ySwM_117.3845 Anthoceros agrestis HOM05D007196 ORTHO05D009100 5.4e-25 117.9 63 84.1
SEGI_24908 Sequoiadendron giganteum HOM05D007196 ORTHO05D009100 7.1e-25 117.5 82 74.4
Pp3c23_14000 Physcomitrium patens HOM05D007196 ORTHO05D009100 1.7e-23 112.8 89 67.4
AUR62023670 Chenopodium quinoa HOM05D007196 ORTHO05D001134 6.6e-23 110.9 74 74.3
PGSC0003DMG400019391 Solanum tuberosum HOM05D007196 ORTHO05D009100 1.1e-22 110.2 88 63.6
Pp3c24_720 Physcomitrium patens HOM05D007196 ORTHO05D009100 1.9e-22 109.4 107 57.9
CAN.G1135.2 Capsicum annuum HOM05D007196 ORTHO05D009100 1.6e-21 106.3 85 68.2
CBR_g49669 Chara braunii HOM05D007196 ORTHO05D009100 8.1e-21 104.0 125 50.4
Cre01.g050550 Chlamydomonas reinhardtii HOM05D007196 ORTHO05D009100 2.6e-19 99.0 79 59.5
Haze_13814 Corylus avellana HOM05D007196 ORTHO05D009100 4.8e-13 78.2 94 54.3
Haze_26518 Corylus avellana HOM05D007196 ORTHO05D009100 4.8e-13 78.2 63 54.0
Cc05_g04470 Coffea canephora HOM05D007196 ORTHO05D009100 9.9e-11 70.5 80 52.5
Nn4g26452 Nelumbo nucifera HOM05D007196 ORTHO05D009100 1.3e-10 70.1 93 49.5
FAN03G1444 Fragaria x ananassa HOM05D000077 ORTHO05D000981 3.8e-10 68.6 90 51.1
VMungo0464G1496 Vigna mungo HOM05D007196 ORTHO05D009100 2.4e-09 65.9 87 52.9
ATR0757G208 Amborella trichopoda HOM05D007196 ORTHO05D009100 1.8e-07 59.7 85 51.8


User provided reference genes

Program Settings