Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv07949 Davidia involucrata HOM05D006399 ORTHO05D007988 1.8e-281 971.8 465 100.0
Dinv34130 Davidia involucrata HOM05D006399 ORTHO05D007988 4.1e-278 960.7 465 98.7
CSS0044828 Camellia sinensis var. sinensis HOM05D006399 ORTHO05D007988 1.8e-180 636.3 493 66.1
QL03p069077 Quercus lobata HOM05D006399 ORTHO05D007988 3.4e-179 632.1 490 66.7
QL93p1999_0143 Quercus lobata HOM05D006399 ORTHO05D007988 7.5e-179 630.9 490 66.5
Cfa008945 Carpinus fangiana HOM05D006399 ORTHO05D007988 1.3e-178 630.2 468 67.5
Haze_11971 Corylus avellana HOM05D006399 ORTHO05D007988 1.3e-178 630.2 488 66.0
GSVIVG01005154001 Vitis vinifera HOM05D006399 ORTHO05D007988 2.0e-176 622.9 471 66.9
QL12p039367 Quercus lobata HOM05D006399 ORTHO05D007988 1.3e-167 593.6 463 65.2
CiPaw.06G087600 Carya illinoinensis HOM05D006399 ORTHO05D007988 6.6e-167 591.3 482 63.1
Atru.chr11.1742 Acer truncatum HOM05D006399 ORTHO05D007988 1.6e-160 570.1 501 61.9
Eucgr.G02484 Eucalyptus grandis HOM05D006399 ORTHO05D007988 2.1e-160 569.7 490 60.8
RcHm_v2.0_Chr4g0439361 Rosa chinensis HOM05D006399 ORTHO05D007988 2.1e-160 569.7 439 65.8
QL12p039232 Quercus lobata HOM05D006399 ORTHO05D007988 5.1e-159 565.1 476 62.4
FAN22G0994 Fragaria x ananassa HOM05D006399 ORTHO05D007988 1.1e-158 563.9 468 62.0
TAR622G1196 Trochodendron aralioides HOM05D006399 ORTHO05D007988 1.5e-158 563.5 487 60.8
FvH4_4g30990 Fragaria vesca HOM05D006399 ORTHO05D007988 4.3e-158 562.0 468 62.2
Dinv34129 Davidia involucrata HOM05D006399 ORTHO05D007988 2.8e-157 559.3 497 59.6
FAN12G2051 Fragaria x ananassa HOM05D006399 ORTHO05D007988 4.7e-157 558.5 468 62.0
CSS0033869 Camellia sinensis var. sinensis HOM05D006399 ORTHO05D007988 1.8e-156 556.6 462 63.0
FAN07G2088 Fragaria x ananassa HOM05D006399 ORTHO05D007988 2.4e-156 556.2 468 61.8
Cc00_g16610 Coffea canephora HOM05D006399 ORTHO05D007988 2.1e-149 533.1 467 57.6
Actinidia17748 Actinidia chinensis HOM05D006399 ORTHO05D007988 2.8e-149 532.7 499 56.9
CiPaw.05G130700 Carya illinoinensis HOM05D006399 ORTHO05D007988 8.1e-149 531.2 503 56.9
Nn3g17286 Nelumbo nucifera HOM05D006399 ORTHO05D007988 1.1e-148 530.8 488 57.4
Nn3g17302 Nelumbo nucifera HOM05D006399 ORTHO05D007988 1.1e-148 530.8 488 57.4
Manes.01G033900 Manihot esculenta HOM05D006399 ORTHO05D007988 5.3e-148 528.5 475 58.3
Rhsim12G0079500 Rhododendron simsii HOM05D006399 ORTHO05D007988 1.5e-147 526.9 459 59.7
Haze_11970 Corylus avellana HOM05D006399 ORTHO05D007988 2.0e-147 526.6 499 56.1
Aqoxy3G00634 Aquilegia oxysepala HOM05D006399 ORTHO05D007988 9.9e-147 524.2 414 63.5
CiPaw.05G130800 Carya illinoinensis HOM05D006399 ORTHO05D007988 1.4e-145 520.4 442 60.4
PGR102G2002 Punica granatum HOM05D006399 ORTHO05D007988 1.9e-145 520.0 465 57.8
DCAR_007171 Daucus carota HOM05D006399 ORTHO05D007988 3.2e-145 519.2 443 60.5
Oeu005762.1 Olea europaea HOM05D006399 ORTHO05D007988 2.7e-144 516.2 496 56.2
Potri.008G089800 Populus trichocarpa HOM05D006399 ORTHO05D007988 3.5e-144 515.8 504 54.4
FAN07G1460 Fragaria x ananassa HOM05D006399 ORTHO05D007988 4.6e-144 515.4 423 61.0
Gorai.013G088500 Gossypium raimondii HOM05D006399 ORTHO05D007988 6.0e-144 515.0 430 58.6
Cfa008944 Carpinus fangiana HOM05D006399 ORTHO05D007988 2.3e-143 513.1 503 55.3
Sabra08G0067200 Salix brachista HOM05D006399 ORTHO05D007988 2.3e-143 513.1 445 58.2
Manes.05G105200 Manihot esculenta HOM05D006399 ORTHO05D007988 3.9e-143 512.3 485 56.5
Thecc.02G341500 Theobroma cacao HOM05D006399 ORTHO05D007988 1.1e-142 510.8 435 59.1
Actinidia31971 Actinidia chinensis HOM05D006399 ORTHO05D007988 3.3e-142 509.2 493 55.0
FvH4_4g30980 Fragaria vesca HOM05D006399 ORTHO05D007988 4.3e-142 508.8 469 56.9
Gohir.D13G077400 Gossypium hirsutum HOM05D006399 ORTHO05D007988 4.3e-142 508.8 430 58.1
Prupe.1G278300 Prunus persica HOM05D006399 ORTHO05D007988 4.3e-142 508.8 443 58.5
FAN12G0639 Fragaria x ananassa HOM05D006399 ORTHO05D007988 5.6e-142 508.4 487 56.1
Glyma.02G110300 Glycine max HOM05D006399 ORTHO05D007988 1.6e-141 506.9 456 57.2
RcHm_v2.0_Chr4g0439341 Rosa chinensis HOM05D006399 ORTHO05D007988 1.1e-140 504.2 475 56.0
Nitab4.5_0000145g0020 Nicotiana tabacum HOM05D006399 ORTHO05D007988 5.3e-140 501.9 405 61.0
Cpa.g.sc1.57 Carica papaya HOM05D006399 ORTHO05D007988 1.5e-139 500.4 422 60.4
CANSAT64G0537 Cannabis sativa HOM05D006399 ORTHO05D007988 2.6e-139 499.6 428 59.1
Glyma.01G052300 Glycine max HOM05D006399 ORTHO05D007988 3.4e-139 499.2 492 53.0
Atru.chr11.1740 Acer truncatum HOM05D006399 ORTHO05D007988 5.8e-139 498.4 490 54.3
Nitab4.5_0004661g0030 Nicotiana tabacum HOM05D006399 ORTHO05D007988 2.2e-138 496.5 384 63.0
Phvul.003G046500 Phaseolus vulgaris HOM05D006399 ORTHO05D007988 2.2e-138 496.5 447 56.4
VMungo1215G0113 Vigna mungo HOM05D006399 ORTHO05D007988 3.8e-138 495.7 449 55.9
Lj2g0004295 Lotus japonicus HOM05D006399 ORTHO05D007988 4.2e-137 492.3 446 56.1
Lalb_Chr04g0255911 Lupinus albus HOM05D006399 ORTHO05D007988 1.6e-136 490.3 458 55.5
MD16G1068900 Malus domestica HOM05D006399 ORTHO05D007988 1.6e-136 490.3 496 52.6
PSO210G1214 Papaver somniferum HOM05D006399 ORTHO05D007988 1.6e-136 490.3 476 55.0
Ca_04827_v3 Cicer arietinum L. HOM05D006399 ORTHO05D007988 2.7e-136 489.6 449 56.6
Eucgr.B03205 Eucalyptus grandis HOM05D006399 ORTHO05D007988 1.0e-135 487.6 416 60.1
Psat2g116280 Pisum sativum HOM05D006399 ORTHO05D007988 1.0e-135 487.6 373 62.5
Duzib248G1019 Durio zibethinus HOM05D006399 ORTHO05D007988 5.1e-135 485.3 437 57.0
Migut.L01261 Erythranthe guttata HOM05D006399 ORTHO05D007988 6.7e-135 485.0 419 58.9
Medtr5g042100 Medicago truncatula HOM05D006399 ORTHO05D007988 3.7e-133 479.2 372 62.4
Ah.02g129470 Amaranthus hybridus HOM05D006399 ORTHO05D007988 1.4e-132 477.2 431 54.1
HanXRQChr15g0476901 Helianthus annuus HOM05D006399 ORTHO05D007988 1.8e-132 476.9 435 56.8
CAN.G1335.8 Capsicum annuum HOM05D006399 ORTHO05D007988 5.3e-132 475.3 406 58.1
Lj3C1034G10 Lonicera japonica HOM05D006399 ORTHO05D007988 1.2e-131 474.2 362 65.2
PGR102G0590 Punica granatum HOM05D006399 ORTHO05D007988 1.5e-131 473.8 442 56.6
TPR.G34705 Trifolium pratense HOM05D006399 ORTHO05D007988 2.6e-131 473.0 428 56.5
Sopen05g003560 Solanum pennellii HOM05D006399 ORTHO05D007988 1.7e-130 470.3 411 57.9
Solyc05g007680.1 Solanum lycopersicum HOM05D006399 ORTHO05D007988 4.9e-130 468.8 413 57.4
Lsat_1_v5_gn_3_51980 Lactuca sativa HOM05D006399 ORTHO05D007988 1.1e-129 467.6 491 51.9
PGSC0003DMG400018440 Solanum tuberosum HOM05D006399 ORTHO05D007988 1.4e-129 467.2 412 57.3
Peaxi162Scf00222g00816 Petunia axillaris HOM05D006399 ORTHO05D007988 2.5e-129 466.5 399 57.4
unitig_699.g19915 Utricularia gibba HOM05D006399 ORTHO05D007988 4.2e-129 465.7 437 53.8
AUR62005827 Chenopodium quinoa HOM05D006399 ORTHO05D007988 2.3e-127 459.9 406 56.4
EL10Ac6g13248 Beta vulgaris HOM05D006399 ORTHO05D007988 2.5e-126 456.4 446 54.9
CDE06G2322 Ceratophyllum demersum HOM05D006399 ORTHO05D007988 1.2e-123 447.6 395 57.0
ECA246G3166 Erigeron canadensis HOM05D006399 ORTHO05D007988 7.6e-123 444.9 367 59.1
ATR0564G327 Amborella trichopoda HOM05D006399 ORTHO05D007988 3.8e-122 442.6 450 52.7
SEGI_38638 Sequoiadendron giganteum HOM05D006399 ORTHO05D007988 3.2e-121 439.5 361 55.1
Aa31LG7G8360 Aethionema arabicum HOM05D006399 ORTHO05D007988 2.7e-120 436.4 430 51.4
GSVIVG01005153001 Vitis vinifera HOM05D006399 ORTHO05D007988 2.3e-119 433.3 478 50.2
Thhalv10007591m.g Eutrema salsugineum HOM05D006399 ORTHO05D007988 3.0e-119 433.0 429 52.9
THA.LOC104808694 Tarenaya hassleriana HOM05D006399 ORTHO05D007988 1.1e-118 431.0 453 51.2
Carub.0001s2425 Capsella rubella HOM05D006399 ORTHO05D007988 1.1e-116 424.5 425 52.7
AL1G38940 Arabidopsis lyrata HOM05D006399 ORTHO05D007988 3.1e-116 422.9 383 55.1
BraA09t39516Z Brassica rapa HOM05D006399 ORTHO05D007988 3.1e-116 422.9 389 54.0
A09p40180 Brassica napus HOM05D006399 ORTHO05D007988 5.3e-116 422.2 390 55.1
AT1G26761 Arabidopsis thaliana HOM05D006399 ORTHO05D007988 1.2e-115 421.0 388 55.4
Sp1g22040 Schrenkiella parvula HOM05D006399 ORTHO05D007988 1.2e-115 421.0 431 51.7
BcaC05g26389 Brassica carinata HOM05D006399 ORTHO05D007988 3.4e-115 419.5 390 54.9
C05p24200 Brassica napus HOM05D006399 ORTHO05D007988 3.4e-115 419.5 390 54.9
BolC5t31156H Brassica oleracea HOM05D006399 ORTHO05D007988 3.4e-115 419.5 390 54.9
CARHR025180 Cardamine hirsuta HOM05D006399 ORTHO05D007988 1.7e-109 400.6 379 53.6
Pp3c5_14870 Physcomitrium patens HOM05D006399 ORTHO05D007988 1.8e-103 380.6 451 43.9
FAN22G2397 Fragaria x ananassa HOM05D006399 ORTHO05D007988 3.4e-86 323.2 461 43.0
Os08g0433300 Oryza sativa ssp. japonica HOM05D006399 ORTHO05D007988 3.7e-85 319.7 343 46.6
Zm00001eb041520 Zea mays HOM05D006399 ORTHO05D007988 2.4e-84 317.0 378 45.8
MSTRG.719 Avicennia marina HOM05D006399 ORTHO05D007988 3.8e-82 309.7 328 52.1
AUR62032821 Chenopodium quinoa HOM05D006399 ORTHO05D007988 5.4e-76 289.3 238 60.9
MBI05_g36409_MAGBIO Magnolia biondii HOM05D006399 ORTHO05D007988 1.1e-73 281.6 250 58.4
Cre06.g273050 Chlamydomonas reinhardtii HOM05D006399 ORTHO05D007988 3.4e-70 270.0 383 39.9
SalBow2G2517 Salvia bowleyana HOM05D006399 ORTHO05D007988 9.8e-70 268.5 208 60.6
Ciclev10032022m.g Citrus clementina HOM05D006399 ORTHO05D007988 4.0e-63 246.5 474 36.1
Lj7C251T2 Lonicera japonica HOM05D006399 ORTHO05D007988 1.5e-57 228.0 289 44.3
PRCOL_00004009 Prasinoderma coloniale HOM05D006399 ORTHO05D007988 1.3e-50 204.9 408 33.6
COL.COLO4_27992 Corchorus olitorius HOM05D006399 ORTHO05D007988 1.2e-40 171.8 157 57.3
AagrBONN_evm.TU.Sc2ySwM_362.1792 Anthoceros agrestis HOM05D006399 ORTHO05D007988 1.1e-39 168.7 353 32.6
Pp3c9_20180 Physcomitrium patens HOM05D006399 ORTHO05D007988 1.1e-39 168.7 356 32.9
SEGI_31378 Sequoiadendron giganteum HOM05D006399 ORTHO05D007988 1.3e-32 145.2 395 29.6
Pp3c11_9510 Physcomitrium patens HOM05D006399 ORTHO05D007988 2.8e-32 144.1 408 30.9
CDE02G1760 Ceratophyllum demersum HOM05D006399 ORTHO05D007988 1.1e-31 142.1 127 54.3
Lj7P254T18 Lonicera japonica HOM05D006399 ORTHO05D007988 4.5e-30 136.7 110 59.1
SEGI_07124 Sequoiadendron giganteum HOM05D006399 ORTHO05D007988 4.9e-29 133.3 311 33.8
TWI75G1459 Tripterygium wilfordii HOM05D006399 ORTHO05D007988 1.1e-28 132.1 152 48.7
Pp3c2_5840 Physcomitrium patens HOM05D006399 ORTHO05D007988 1.3e-26 125.2 248 35.1
Hma1.2p1_0235F.1_g098770 Hydrangea macrophylla HOM05D006399 ORTHO05D007988 6.0e-19 99.8 52 82.7
AagrBONN_evm.TU.Sc2ySwM_362.1561 Anthoceros agrestis HOM05D006399 ORTHO05D007988 5.5e-12 76.6 286 27.6
SGA_v2.0_scaffold109G31082 Striga asiatica HOM05D006399 ORTHO05D007988 1.5e-09 68.6 77 46.8


User provided reference genes

Program Settings