Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv07946 Davidia involucrata HOM05D006326 ORTHO05D007589 4.0e-247 857.8 495 100.0
Dinv05303 Davidia involucrata HOM05D006326 ORTHO05D007589 1.3e-168 597.0 513 70.4
Dinv01681 Davidia involucrata HOM05D006326 ORTHO05D007589 1.0e-165 587.4 387 92.5
GSVIVG01033643001 Vitis vinifera HOM05D006326 ORTHO05D007589 4.1e-151 538.9 517 61.9
CSS0039389 Camellia sinensis var. sinensis HOM05D006326 ORTHO05D007589 1.7e-136 490.3 509 60.7
Atru.chr1.1394 Acer truncatum HOM05D006326 ORTHO05D007589 1.2e-134 484.2 512 58.8
Actinidia17957 Actinidia chinensis HOM05D006326 ORTHO05D007589 2.8e-131 473.0 515 59.6
TAR623G0088 Trochodendron aralioides HOM05D006326 ORTHO05D007589 7.1e-119 431.8 536 54.5
CiPaw.09G048500 Carya illinoinensis HOM05D006326 ORTHO05D007589 1.6e-118 430.6 519 54.9
MD14G1089900 Malus domestica HOM05D006326 ORTHO05D007589 3.7e-115 419.5 510 54.3
Actinidia37880 Actinidia chinensis HOM05D006326 ORTHO05D007589 1.1e-114 417.9 463 58.1
Thecc.05G128800 Theobroma cacao HOM05D006326 ORTHO05D007589 1.2e-113 414.5 519 54.5
RcHm_v2.0_Chr6g0276151 Rosa chinensis HOM05D006326 ORTHO05D007589 4.9e-112 409.1 510 54.5
QL07p011201 Quercus lobata HOM05D006326 ORTHO05D007589 2.5e-108 396.7 519 55.1
Gohir.D09G115200 Gossypium hirsutum HOM05D006326 ORTHO05D007589 3.1e-106 389.8 533 50.8
Potri.016G036000 Populus trichocarpa HOM05D006326 ORTHO05D007589 2.2e-104 383.6 495 51.9
Gorai.006G132800 Gossypium raimondii HOM05D006326 ORTHO05D007589 4.3e-100 369.4 533 49.3
FAN20G2839 Fragaria x ananassa HOM05D006326 ORTHO05D007589 1.1e-98 364.8 510 50.2
Lj5g0016845 Lotus japonicus HOM05D006326 ORTHO05D007589 6.9e-98 362.1 527 49.1
Prupe.7G034100 Prunus persica HOM05D006326 ORTHO05D007589 1.5e-97 360.9 491 50.7
Haze_20235 Corylus avellana HOM05D006326 ORTHO05D007589 1.9e-95 354.0 483 50.9
Nitab4.5_0002982g0070 Nicotiana tabacum HOM05D006326 ORTHO05D007589 4.7e-94 349.4 514 53.1
Oeu057785.1 Olea europaea HOM05D006326 ORTHO05D007589 6.1e-94 349.0 506 47.4
Oeu057784.1 Olea europaea HOM05D006326 ORTHO05D007589 2.3e-93 347.1 506 47.4
Aqoxy1G00376 Aquilegia oxysepala HOM05D006326 ORTHO05D007589 1.5e-92 344.4 521 48.2
CsaV3_4G029490 Cucumis sativus L. HOM05D006326 ORTHO05D007589 1.5e-92 344.4 501 49.5
FAN15G3215 Fragaria x ananassa HOM05D006326 ORTHO05D007589 4.4e-92 342.8 510 48.8
FvH4_2g14070 Fragaria vesca HOM05D006326 ORTHO05D007589 7.4e-92 342.0 510 48.6
Ca_05361_v3 Cicer arietinum L. HOM05D006326 ORTHO05D007589 3.7e-91 339.7 511 47.6
ClCG04G005630 Citrullus lanatus HOM05D006326 ORTHO05D007589 1.1e-90 338.2 540 46.1
Hma1.2p1_0252F.1_g102780 Hydrangea macrophylla HOM05D006326 ORTHO05D007589 1.4e-90 337.8 457 49.7
Nitab4.5_0000237g0060 Nicotiana tabacum HOM05D006326 ORTHO05D007589 1.4e-90 337.8 516 51.4
Cpa.g.sc92.89 Carica papaya HOM05D006326 ORTHO05D007589 2.4e-90 337.0 517 48.5
Oeu022970.2 Olea europaea HOM05D006326 ORTHO05D007589 9.1e-90 335.1 532 46.6
Lalb_Chr02g0156611 Lupinus albus HOM05D006326 ORTHO05D007589 1.0e-88 331.6 502 50.4
Potri.006G039900 Populus trichocarpa HOM05D006326 ORTHO05D007589 1.7e-88 330.9 504 48.2
COL.COLO4_37458 Corchorus olitorius HOM05D006326 ORTHO05D007589 5.0e-88 329.3 500 47.0
Manes.09G004100 Manihot esculenta HOM05D006326 ORTHO05D007589 5.0e-88 329.3 460 50.7
Peaxi162Scf00076g00325 Petunia axillaris HOM05D006326 ORTHO05D007589 6.5e-88 328.9 539 46.2
arahy.Tifrunner.gnm1.ann1.Z1KKER Arachis hypogaea HOM05D006326 ORTHO05D007589 2.5e-87 327.0 500 50.8
MSTRG.19798 Avicennia marina HOM05D006326 ORTHO05D007589 1.4e-85 321.2 497 48.1
DCAR_013645 Daucus carota HOM05D002003 ORTHO05D002037 1.8e-85 320.9 509 46.6
CiPaw.10G040500 Carya illinoinensis HOM05D006326 ORTHO05D007589 5.2e-85 319.3 468 50.9
arahy.Tifrunner.gnm1.ann1.0NJ1V1 Arachis hypogaea HOM05D006326 ORTHO05D007589 8.8e-85 318.5 496 50.2
Rhsim03G0036800 Rhododendron simsii HOM05D006326 ORTHO05D007589 1.7e-83 314.3 633 40.9
vmacro07781 Vaccinium macrocarpon HOM05D006326 ORTHO05D007589 8.2e-83 312.0 498 47.8
SalBow6G7225 Salvia bowleyana HOM05D006326 ORTHO05D007589 1.1e-82 311.6 511 44.6
Sabra06G0026900 Salix brachista HOM05D006326 ORTHO05D007589 7.0e-82 308.9 502 46.8
SabraUnG0002500 Salix brachista HOM05D006326 ORTHO05D007589 7.0e-82 308.9 502 46.8
Psat6g129480 Pisum sativum HOM05D006326 ORTHO05D007589 3.5e-81 306.6 499 45.9
Phvul.007G233400 Phaseolus vulgaris HOM05D006326 ORTHO05D007589 6.5e-80 302.4 504 46.6
CAN.G51.3 Capsicum annuum HOM05D006326 ORTHO05D007589 1.4e-77 294.7 514 45.3
Gohir.A09G118300 Gossypium hirsutum HOM05D006326 ORTHO05D007589 1.8e-77 294.3 459 50.8
Lsat_1_v5_gn_9_29721 Lactuca sativa HOM05D006326 ORTHO05D007589 9.7e-76 288.5 496 49.8
Glyma.02G166100 Glycine max HOM05D006326 ORTHO05D007589 6.3e-75 285.8 454 46.3
Ciclev10011438m.g Citrus clementina HOM05D006326 ORTHO05D007589 3.1e-74 283.5 460 48.3
FAN24G3485 Fragaria x ananassa HOM05D006326 ORTHO05D007589 4.1e-74 283.1 459 46.6
VMungo0720G1800 Vigna mungo HOM05D006326 ORTHO05D007589 5.3e-74 282.7 466 46.4
Duzib128G1973 Durio zibethinus HOM05D006326 ORTHO05D007589 2.0e-73 280.8 408 48.0
CSS0038712 Camellia sinensis var. sinensis HOM05D006326 ORTHO05D007589 2.7e-73 280.4 362 54.4
CANSAT64G1393 Cannabis sativa HOM05D006326 ORTHO05D007589 5.9e-73 279.3 447 49.4
TWI74G0746 Tripterygium wilfordii HOM05D006326 ORTHO05D007589 6.1e-70 269.2 463 46.2
Hma1.2p1_0975F.1_g243130 Hydrangea macrophylla HOM05D006326 ORTHO05D007589 2.3e-69 267.3 331 55.6
Hma1.2p1_0975F.1_g243140 Hydrangea macrophylla HOM05D006326 ORTHO05D007589 2.0e-68 264.2 327 56.0
Glyma.10G102200 Glycine max HOM05D006326 ORTHO05D007589 3.4e-68 263.5 456 44.7
Nn7g36809 Nelumbo nucifera HOM05D006326 ORTHO05D007589 9.8e-68 261.9 446 46.2
ATR0317G072 Amborella trichopoda HOM05D006326 ORTHO05D007589 1.1e-66 258.5 557 40.2
SGA_v2.0_scaffold69G23160 Striga asiatica HOM05D006326 ORTHO05D007589 3.5e-65 253.4 514 42.0
Eucgr.B03116 Eucalyptus grandis HOM05D006326 ORTHO05D007589 1.7e-64 251.1 465 40.6
Medtr1g050510 Medicago truncatula HOM05D006326 ORTHO05D007589 3.3e-63 246.9 495 41.0
MELO3C019097.2 Cucumis melo HOM05D006326 ORTHO05D007589 2.1e-62 244.2 451 46.3
Sopen12g010520 Solanum pennellii HOM05D006326 ORTHO05D007589 2.3e-61 240.7 463 41.0
unitig_60.g25479 Utricularia gibba HOM05D006326 ORTHO05D007589 2.2e-59 234.2 491 40.7
TWI53G1954 Tripterygium wilfordii HOM05D006326 ORTHO05D007589 6.3e-59 232.6 457 41.6
Cc06_g19610 Coffea canephora HOM05D006326 ORTHO05D007589 3.1e-58 230.3 460 42.8
HPP92_019182 Vanilla planifolia HOM05D006326 ORTHO05D007589 3.5e-57 226.9 525 39.2
ECA247G0820 Erigeron canadensis HOM05D006326 ORTHO05D007589 2.5e-55 220.7 487 40.0
AUR62018355 Chenopodium quinoa HOM05D006326 ORTHO05D007589 7.3e-55 219.2 498 41.4
Migut.J01646 Erythranthe guttata HOM05D006326 ORTHO05D007589 4.7e-54 216.5 462 38.7
AUR62030307 Chenopodium quinoa HOM05D006326 ORTHO05D007589 6.1e-54 216.1 497 39.4
Solyc12g020000.3 Solanum lycopersicum HOM05D006326 ORTHO05D007589 8.9e-53 212.2 501 38.9
Sp5g05840 Schrenkiella parvula HOM05D006326 ORTHO05D007589 1.1e-50 205.3 498 38.4
Hund19089 Selenicereus undatus HOM05D006326 ORTHO05D007589 1.1e-50 205.3 547 36.9
Aa31LG10G11560 Aethionema arabicum HOM05D006326 ORTHO05D007589 1.4e-50 204.9 533 36.0
PSO384G3095 Papaver somniferum HOM05D006326 ORTHO05D007589 1.4e-50 204.9 455 39.1
CARHR166860 Cardamine hirsuta HOM05D006326 ORTHO05D007589 3.5e-49 200.3 513 36.8
TPR.G7607 Trifolium pratense HOM05D006326 ORTHO05D007589 7.8e-49 199.1 503 42.9
SGA_v2.0_scaffold1000G53781 Striga asiatica HOM05D006326 ORTHO05D007589 4.3e-47 193.4 337 42.4
Sc13g0001090 Simmondsia chinensis HOM05D006326 ORTHO05D007589 7.3e-47 192.6 462 37.2
HanXRQChr15g0491141 Helianthus annuus HOM05D006326 ORTHO05D007589 3.6e-46 190.3 237 54.4
PSO339G2802 Papaver somniferum HOM05D006326 ORTHO05D007589 3.6e-46 190.3 456 39.0
Sed0018260 Sechium edule HOM05D006326 ORTHO05D007589 2.3e-45 187.6 402 41.3
AL5G38090 Arabidopsis lyrata HOM05D006326 ORTHO05D007589 3.1e-45 187.2 503 38.6
Ah.13g076820 Amaranthus hybridus HOM05D002003 ORTHO05D002037 6.8e-45 186.0 502 37.1
C08p31960 Brassica napus HOM05D004518 ORTHO05D005434 1.2e-44 185.3 491 36.7
EL10Ac3g07247 Beta vulgaris HOM05D006326 ORTHO05D007589 5.8e-44 183.0 497 36.4
Carub.0005s2347 Capsella rubella HOM05D006326 ORTHO05D007589 4.1e-42 176.8 499 36.3
BolC8t50813H Brassica oleracea HOM05D006326 ORTHO05D007589 4.6e-41 173.3 484 36.2
BcaC07g40122 Brassica carinata HOM05D006326 ORTHO05D007589 7.8e-41 172.6 482 35.7
CDE04G2458 Ceratophyllum demersum HOM05D006326 ORTHO05D007589 1.1e-39 168.7 207 53.1
SEGI_11590 Sequoiadendron giganteum HOM05D006326 ORTHO05D007589 9.5e-39 165.6 581 36.5
THA.LOC104815890 Tarenaya hassleriana HOM05D006326 ORTHO05D007589 1.2e-38 165.2 447 40.0
SGA_v2.0_scaffold66G22355 Striga asiatica HOM05D006326 ORTHO05D007589 1.1e-37 162.2 136 64.7
BcaC07g39981 Brassica carinata HOM05D006326 ORTHO05D007589 9.9e-36 155.6 360 38.3
PGR142G2735 Punica granatum HOM05D006326 ORTHO05D007589 2.3e-32 144.4 450 34.4
Pp3c14_4840 Physcomitrium patens HOM05D006326 ORTHO05D007589 3.0e-32 144.1 145 55.9
Mapoly0069s0088 Marchantia polymorpha HOM05D006326 ORTHO05D007589 1.1e-31 142.1 208 44.7
Thhalv10005957m.g Eutrema salsugineum HOM05D006326 ORTHO05D007589 9.5e-31 139.0 455 34.5
unitig_0.g603 Utricularia gibba HOM05D006326 ORTHO05D007589 1.1e-29 135.6 489 36.4
SGA_v2.0_scaffold66G22262 Striga asiatica HOM05D006326 ORTHO05D007589 6.8e-29 132.9 496 32.5
AagrBONN_evm.TU.Sc2ySwM_344.979 Anthoceros agrestis HOM05D006326 ORTHO05D007589 7.6e-28 129.4 351 36.2
Medtr0722s0010 Medicago truncatula HOM05D006326 ORTHO05D007589 3.0e-24 117.5 77 79.2
Actinidia01833 Actinidia chinensis HOM05D006326 ORTHO05D007589 3.3e-23 114.0 74 81.1
A09p49570 Brassica napus HOM05D006326 ORTHO05D007589 4.3e-23 113.6 447 32.7
BraA09t40410Z Brassica rapa HOM05D006326 ORTHO05D007589 4.3e-23 113.6 447 32.7
Pp3c1_21670 Physcomitrium patens HOM05D006326 ORTHO05D007589 4.0e-21 107.1 113 50.4
SMO351G0508 Selaginella moellendorffii HOM05D006326 ORTHO05D007589 2.6e-20 104.4 144 46.5
CBR_g50470 Chara braunii HOM05D006326 ORTHO05D007589 3.4e-20 104.0 147 49.0
CSS0022371 Camellia sinensis var. sinensis HOM05D006326 ORTHO05D007589 7.8e-17 92.8 63 74.6
Actinidia01832 Actinidia chinensis HOM05D006326 ORTHO05D007589 1.0e-16 92.4 177 41.2
Zm00001eb185630 Zea mays HOM05D006326 ORTHO05D007589 5.3e-13 80.1 307 33.9
Dinv25932 Davidia involucrata HOM05D000657 ORTHO05D002092 2.2e-11 74.7 45 88.9
SGA_v2.0_scaffold66G22360 Striga asiatica HOM05D006326 ORTHO05D007589 7.9e-09 66.2 485 26.8
Mapoly0021s0060 Marchantia polymorpha HOM05D006326 ORTHO05D007589 1.8e-08 65.1 105 41.0
CSS0001940 Camellia sinensis var. sinensis HOM05D006326 ORTHO05D007589 5.6e-07 60.1 44 72.7
CDE02G3045 Ceratophyllum demersum HOM05D006326 ORTHO05D007589 5.6e-07 60.1 76 48.7
AT3G56720 Arabidopsis thaliana HOM05D006326 ORTHO05D007589 2.1e-06 58.2 399 32.6


User provided reference genes

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