Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv07849 Davidia involucrata HOM05D007219 ORTHO05D008995 3.9e-81 304.7 148 100.0
Dinv05845 Davidia involucrata HOM05D007219 ORTHO05D008995 3.1e-70 268.5 143 88.8
CSS0025035 Camellia sinensis var. sinensis HOM05D007219 ORTHO05D008995 3.6e-66 255.0 143 86.7
TAR626G0546 Trochodendron aralioides HOM05D007219 ORTHO05D008995 6.1e-66 254.2 143 84.6
GSVIVG01030037001 Vitis vinifera HOM05D007219 ORTHO05D008995 6.1e-66 254.2 143 83.9
Hma1.2p1_0133F.1_g061230 Hydrangea macrophylla HOM05D007219 ORTHO05D008995 8.0e-66 253.8 143 83.9
Prupe.3G202800 Prunus persica HOM05D007219 ORTHO05D008995 1.8e-65 252.7 143 84.6
vmacro12114 Vaccinium macrocarpon HOM05D007219 ORTHO05D008995 2.3e-65 252.3 143 83.2
Nn1g03266 Nelumbo nucifera HOM05D007219 ORTHO05D008995 6.7e-65 250.8 143 82.5
Cc07_g19250 Coffea canephora HOM05D007219 ORTHO05D008995 4.4e-64 248.1 143 81.1
Sed0018447 Sechium edule HOM05D007219 ORTHO05D008995 3.7e-63 245.0 143 82.5
RcHm_v2.0_Chr2g0156861 Rosa chinensis HOM05D007219 ORTHO05D008995 4.1e-62 241.5 143 80.4
Migut.M00020 Erythranthe guttata HOM05D007219 ORTHO05D008995 5.3e-62 241.1 143 78.3
MD09G1120700 Malus domestica HOM05D007219 ORTHO05D008995 7.0e-62 240.7 143 80.4
FvH4_6g41300 Fragaria vesca HOM05D007219 ORTHO05D008995 2.0e-61 239.2 143 78.3
FAN14G1895 Fragaria x ananassa HOM05D007219 ORTHO05D008995 2.0e-61 239.2 143 78.3
Nitab4.5_0011106g0020 Nicotiana tabacum HOM05D007219 ORTHO05D008995 2.0e-61 239.2 143 76.9
Lsat_1_v5_gn_5_121560 Lactuca sativa HOM05D007219 ORTHO05D008995 3.5e-61 238.4 143 79.7
MBI16_g42309_MAGBIO Magnolia biondii HOM05D007219 ORTHO05D008995 4.5e-61 238.0 142 78.2
SalBow7G0564 Salvia bowleyana HOM05D007219 ORTHO05D008995 4.5e-61 238.0 143 77.6
Thecc.01G189100 Theobroma cacao HOM05D007219 ORTHO05D008995 4.5e-61 238.0 143 78.3
Hund24148 Selenicereus undatus HOM05D007219 ORTHO05D008995 5.9e-61 237.7 143 79.7
Sopen05g025870 Solanum pennellii HOM05D007219 ORTHO05D008995 7.7e-61 237.3 143 76.9
Cpa.g.sc395.3 Carica papaya HOM05D007219 ORTHO05D008995 1.7e-60 236.1 143 78.3
Ciclev10016673m.g Citrus clementina HOM05D007219 ORTHO05D008995 1.7e-60 236.1 142 76.8
Duzib138G0301 Durio zibethinus HOM05D007219 ORTHO05D008995 1.7e-60 236.1 143 76.9
Manes.12G083700 Manihot esculenta HOM05D007219 ORTHO05D008995 1.7e-60 236.1 143 79.0
PGSC0003DMG400020758 Solanum tuberosum HOM05D007219 ORTHO05D008995 1.7e-60 236.1 143 75.5
Actinidia07878 Actinidia chinensis HOM05D007219 ORTHO05D008995 2.2e-60 235.7 132 87.9
MSTRG.14930 Avicennia marina HOM05D007219 ORTHO05D008995 2.2e-60 235.7 143 77.6
Peaxi162Scf00147g01822 Petunia axillaris HOM05D007219 ORTHO05D008995 2.2e-60 235.7 143 76.2
CsaV3_7G002720 Cucumis sativus L. HOM05D007219 ORTHO05D008995 5.0e-60 234.6 143 79.7
CAN.G716.12 Capsicum annuum HOM05D007219 ORTHO05D008995 6.5e-60 234.2 143 76.2
QL08p028873 Quercus lobata HOM05D007219 ORTHO05D008995 6.5e-60 234.2 143 76.9
CiPaw.03G278000 Carya illinoinensis HOM05D007219 ORTHO05D008995 1.5e-59 233.0 142 76.8
Eucgr.K00659 Eucalyptus grandis HOM05D007219 ORTHO05D008995 3.2e-59 231.9 140 77.9
HanXRQChr12g0373931 Helianthus annuus HOM05D007219 ORTHO05D008995 3.2e-59 231.9 143 78.3
ECA234G4660 Erigeron canadensis HOM05D007219 ORTHO05D008995 4.2e-59 231.5 143 77.6
THA.LOC104826618 Tarenaya hassleriana HOM05D007219 ORTHO05D008995 5.5e-59 231.1 143 76.2
Oeu029809.1 Olea europaea HOM05D007219 ORTHO05D008995 7.2e-59 230.7 143 75.5
PGR142G0267 Punica granatum HOM05D007219 ORTHO05D008995 7.2e-59 230.7 140 78.6
Atru.chr6.3346 Acer truncatum HOM05D007219 ORTHO05D008995 9.4e-59 230.3 143 76.9
DCAR_019229 Daucus carota HOM05D007219 ORTHO05D008995 9.4e-59 230.3 143 75.5
Lj6g0005071 Lotus japonicus HOM05D007219 ORTHO05D008995 1.2e-58 229.9 143 74.8
CANSAT64G0298 Cannabis sativa HOM05D007219 ORTHO05D008995 2.1e-58 229.2 143 76.9
Duzib133G0547 Durio zibethinus HOM05D007219 ORTHO05D008995 3.6e-58 228.4 142 75.4
Gohir.A07G167500 Gossypium hirsutum HOM05D007219 ORTHO05D008995 6.1e-58 227.6 143 75.5
Glyma.13G025700 Glycine max HOM05D007219 ORTHO05D008995 8.0e-58 227.3 143 76.2
Gorai.001G193200 Gossypium raimondii HOM05D007219 ORTHO05D008995 8.0e-58 227.3 143 74.1
Haze_12702 Corylus avellana HOM05D007219 ORTHO05D008995 1.4e-57 226.5 163 67.5
Gohir.D07G173000 Gossypium hirsutum HOM05D007219 ORTHO05D008995 2.3e-57 225.7 143 73.4
Phvul.006G013300 Phaseolus vulgaris HOM05D007219 ORTHO05D008995 2.3e-57 225.7 143 74.8
Sp3g23430 Schrenkiella parvula HOM05D007219 ORTHO05D008995 2.3e-57 225.7 143 72.0
Aqoxy1G04023 Aquilegia oxysepala HOM05D007219 ORTHO05D008995 3.0e-57 225.3 143 74.8
COL.COLO4_04268 Corchorus olitorius HOM05D007219 ORTHO05D008995 4.0e-57 224.9 135 78.5
Lalb_Chr22g0360881 Lupinus albus HOM05D007219 ORTHO05D008995 5.2e-57 224.6 143 74.8
Potri.014G161800 Populus trichocarpa HOM05D007219 ORTHO05D008995 5.2e-57 224.6 143 73.4
TWI36G0002 Tripterygium wilfordii HOM05D007219 ORTHO05D008995 8.8e-57 223.8 143 74.8
AL3G42440 Arabidopsis lyrata HOM05D007219 ORTHO05D008995 1.2e-56 223.4 143 72.0
AT2G04845 Arabidopsis thaliana HOM05D007219 ORTHO05D008995 1.2e-56 223.4 143 72.7
CDE10G1006 Ceratophyllum demersum HOM05D007219 ORTHO05D008995 1.2e-56 223.4 143 74.8
arahy.Tifrunner.gnm1.ann1.N6EW4G Arachis hypogaea HOM05D007219 ORTHO05D008995 1.5e-56 223.0 143 72.7
CARHR102840 Cardamine hirsuta HOM05D007219 ORTHO05D008995 2.6e-56 222.2 143 72.0
BolC3t17801H Brassica oleracea HOM05D007219 ORTHO05D008995 3.3e-56 221.9 143 70.6
PSO302G0207 Papaver somniferum HOM05D007219 ORTHO05D008995 5.7e-56 221.1 147 71.4
Carub.0003s2645 Capsella rubella HOM05D007219 ORTHO05D008995 3.7e-55 218.4 143 69.9
Thhalv10002661m.g Eutrema salsugineum HOM05D007219 ORTHO05D008995 8.2e-55 217.2 143 71.3
HPP92_020392 Vanilla planifolia HOM05D007219 ORTHO05D008995 3.1e-54 215.3 143 70.6
MELO3C024213.2 Cucumis melo HOM05D007219 ORTHO05D008995 1.2e-53 213.4 124 82.3
ATR0712G058 Amborella trichopoda HOM05D007219 ORTHO05D008995 1.6e-53 213.0 143 68.5
Aa31LG1G4150 Aethionema arabicum HOM05D002708 ORTHO05D003516 4.5e-53 211.5 143 69.2
Medtr3g083200 Medicago truncatula HOM05D007219 ORTHO05D008995 1.0e-52 210.3 143 68.5
Zm00001eb401150 Zea mays HOM05D007219 ORTHO05D008995 1.3e-52 209.9 141 68.1
Psat5g102680 Pisum sativum HOM05D007219 ORTHO05D008995 1.7e-52 209.5 143 67.8
Sabra14G0123400 Salix brachista HOM05D007219 ORTHO05D008995 1.7e-52 209.5 164 62.8
TPR.G19322 Trifolium pratense HOM05D007219 ORTHO05D008995 2.9e-52 208.8 143 67.8
Os03g0194400 Oryza sativa ssp. japonica HOM05D007219 ORTHO05D008995 4.2e-51 204.9 148 67.6
SGA_v2.0_scaffold73G24522 Striga asiatica HOM05D007219 ORTHO05D008995 8.0e-50 200.7 120 75.8
AUR62017530 Chenopodium quinoa HOM05D007219 ORTHO05D008995 2.6e-48 195.7 204 52.9
FAN05G4854 Fragaria x ananassa HOM05D007219 ORTHO05D008995 1.0e-44 183.7 149 63.8
EL10Ac9g22747 Beta vulgaris HOM05D007219 ORTHO05D008995 1.9e-43 179.5 143 64.3
SMO115G0308 Selaginella moellendorffii HOM05D007219 ORTHO05D008995 9.5e-43 177.2 142 59.2
arahy.Tifrunner.gnm1.ann1.E78GDQ Arachis hypogaea HOM05D007219 ORTHO05D008995 8.0e-42 174.1 269 39.0
arahy.Tifrunner.gnm1.ann1.XZ9N91 Arachis hypogaea HOM05D007219 ORTHO05D008995 8.0e-42 174.1 269 39.0
QL08p028923 Quercus lobata HOM05D007219 ORTHO05D008995 8.3e-39 164.1 295 36.3
Ca_16365_v3 Cicer arietinum L. HOM05D007219 ORTHO05D008995 4.1e-38 161.8 110 71.8
ClCG02G002620 Citrullus lanatus HOM05D007219 ORTHO05D008995 9.2e-38 160.6 100 79.0
Sc21g0000880 Simmondsia chinensis HOM05D007219 ORTHO05D008995 3.5e-37 158.7 97 75.3
Ah.14g082820 Amaranthus hybridus HOM05D007219 ORTHO05D008995 4.5e-37 158.3 98 74.5
Mapoly0089s0028 Marchantia polymorpha HOM05D007219 ORTHO05D008995 1.7e-36 156.4 143 54.5
Cfa014252 Carpinus fangiana HOM05D007219 ORTHO05D008995 1.5e-35 153.3 120 61.7
AUR62015074 Chenopodium quinoa HOM05D007219 ORTHO05D008995 7.3e-35 151.0 99 72.7
Rhsim06G0172900 Rhododendron simsii HOM05D007219 ORTHO05D008995 8.0e-34 147.5 202 48.5
FAN02G0754 Fragaria x ananassa HOM05D007219 ORTHO05D008995 8.3e-31 137.5 143 50.3
VMungo0540G0477 Vigna mungo HOM05D007219 ORTHO05D008995 1.7e-28 129.8 148 48.6
MCO15G116 Micromonas commoda HOM05D007219 ORTHO05D008995 5.6e-27 124.8 142 46.5
Nitab4.5_0002877g0050 Nicotiana tabacum HOM05D007219 ORTHO05D008995 5.2e-25 118.2 75 76.0
SEGI_01956 Sequoiadendron giganteum HOM05D007219 ORTHO05D008995 1.4e-22 110.2 69 69.6
MD17G1111700 Malus domestica HOM05D007219 ORTHO05D008995 1.9e-22 109.8 96 57.3
CBR_g31837 Chara braunii HOM05D007219 ORTHO05D008995 1.6e-21 106.7 236 31.4
Actinidia09773 Actinidia chinensis HOM05D007219 ORTHO05D008995 2.3e-17 92.8 55 80.0
Thhalv10003074m.g Eutrema salsugineum HOM05D007219 ORTHO05D008995 1.4e-14 83.6 55 69.1
PRCOL_00004041 Prasinoderma coloniale HOM05D007219 ORTHO05D008995 4.6e-13 78.6 138 37.7
CSS0035148 Camellia sinensis var. sinensis HOM05D007219 ORTHO05D008995 3.9e-12 75.5 47 78.7
AagrBONN_evm.TU.Sc2ySwM_362.1409 Anthoceros agrestis HOM05D007219 ORTHO05D008995 3.3e-11 72.4 113 38.1
CSS0030489 Camellia sinensis var. sinensis HOM05D007219 ORTHO05D008995 1.1e-09 67.4 36 86.1
CSS0021882 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 6.8e-09 64.7 34 85.3
Cre03.g184151 Chlamydomonas reinhardtii HOM05D007219 ORTHO05D008995 7.6e-08 61.2 79 45.6
MD17G1111600 Malus domestica HOM05D007219 ORTHO05D008995 4.9e-07 58.5 35 77.1


User provided reference genes

Program Settings