Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv07791 Davidia involucrata HOM05D000188 ORTHO05D005675 3.2e-218 761.5 404 100.0
Dinv13036 Davidia involucrata HOM05D001180 ORTHO05D005675 7.9e-100 368.2 268 74.3
Dinv44753 Davidia involucrata HOM05D000446 ORTHO05D005675 2.2e-94 350.1 312 64.1
CSS0013381 Camellia sinensis var. sinensis HOM05D000188 ORTHO05D005675 2.5e-85 320.1 299 60.2
CSS0018464 Camellia sinensis var. sinensis HOM05D000188 ORTHO05D005675 5.5e-85 318.9 285 61.8
Actinidia30754 Actinidia chinensis HOM05D000188 ORTHO05D005675 1.3e-81 307.8 267 63.3
vmacro04758 Vaccinium macrocarpon HOM05D000188 ORTHO05D005675 1.2e-76 291.2 267 59.6
CiPaw.06G021000 Carya illinoinensis HOM05D000188 ORTHO05D005675 1.6e-76 290.8 276 58.0
TAR376G1048 Trochodendron aralioides HOM05D000188 ORTHO05D005675 2.1e-76 290.4 313 55.0
Rhsim08G0249100 Rhododendron simsii HOM05D000188 ORTHO05D005675 2.7e-76 290.0 267 60.3
Haze_00578 Corylus avellana HOM05D000188 ORTHO05D005675 1.7e-73 280.8 270 60.0
Cfa015917 Carpinus fangiana HOM05D000188 ORTHO05D005675 3.7e-73 279.6 270 58.9
Duzib093G0224 Durio zibethinus HOM05D000188 ORTHO05D005675 1.7e-70 270.8 270 59.6
Thecc.08G110700 Theobroma cacao HOM05D000188 ORTHO05D005675 5.0e-70 269.2 254 59.8
QL12p036114 Quercus lobata HOM05D000188 ORTHO05D005675 1.9e-69 267.3 269 56.9
Duzib116G0930 Durio zibethinus HOM05D000188 ORTHO05D005675 1.8e-67 260.8 270 57.4
Actinidia30424 Actinidia chinensis HOM05D000188 ORTHO05D005675 6.7e-67 258.8 248 60.1
Hma1.2p1_0120F.1_g057180 Hydrangea macrophylla HOM05D000188 ORTHO05D005675 1.2e-66 258.1 264 57.2
Gohir.D05G231000 Gossypium hirsutum HOM05D000188 ORTHO05D005675 1.1e-64 251.5 270 57.0
Gorai.009G239200 Gossypium raimondii HOM05D000188 ORTHO05D005675 1.1e-64 251.5 270 57.0
CiPaw.06G021100 Carya illinoinensis HOM05D000188 ORTHO05D005675 2.4e-64 250.4 267 54.7
Nn5g29054 Nelumbo nucifera HOM05D000188 ORTHO05D005675 9.1e-64 248.4 283 55.1
TAR381G0054 Trochodendron aralioides HOM05D000188 ORTHO05D005675 1.3e-62 244.6 281 53.7
Lj4A107T49 Lonicera japonica HOM05D000188 ORTHO05D005675 1.7e-62 244.2 318 52.5
Gohir.A05G228600 Gossypium hirsutum HOM05D000188 ORTHO05D005675 8.5e-62 241.9 270 55.6
COL.COLO4_16446 Corchorus olitorius HOM05D000188 ORTHO05D005675 3.6e-60 236.5 270 52.6
MD15G1364900 Malus domestica HOM05D000188 ORTHO05D005675 1.0e-59 235.0 271 52.8
Peaxi162Scf00041g00212 Petunia axillaris HOM05D000188 ORTHO05D005675 1.0e-59 235.0 264 51.9
MD08G1179700 Malus domestica HOM05D000188 ORTHO05D005675 2.0e-58 230.7 271 52.0
Prupe.1G513000 Prunus persica HOM05D000188 ORTHO05D005675 2.0e-58 230.7 271 52.0
Nitab4.5_0003496g0050 Nicotiana tabacum HOM05D000188 ORTHO05D005675 2.6e-58 230.3 266 53.4
Nitab4.5_0000469g0120 Nicotiana tabacum HOM05D000188 ORTHO05D005675 7.5e-58 228.8 268 52.2
TWI34G0328 Tripterygium wilfordii HOM05D000188 ORTHO05D005675 9.8e-58 228.4 272 51.8
Cc10_g07500 Coffea canephora HOM05D000188 ORTHO05D005675 4.8e-57 226.1 268 52.6
Solyc04g072840.3 Solanum lycopersicum HOM05D000188 ORTHO05D005675 2.4e-56 223.8 267 50.9
PGSC0003DMG400009483 Solanum tuberosum HOM05D000188 ORTHO05D005675 7.0e-56 222.2 267 50.6
Sopen04g028990 Solanum pennellii HOM05D000188 ORTHO05D005675 1.6e-55 221.1 267 50.6
GSVIVG01009001001 Vitis vinifera HOM05D000188 ORTHO05D005675 2.7e-55 220.3 215 57.7
Manes.12G040200 Manihot esculenta HOM05D000188 ORTHO05D005675 7.7e-55 218.8 271 49.8
Actinidia33149 Actinidia chinensis HOM05D000188 ORTHO05D005675 1.3e-54 218.0 247 53.0
Ciclev10030523m.g Citrus clementina HOM05D000188 ORTHO05D005675 1.3e-54 218.0 268 53.0
Oeu061481.1 Olea europaea HOM05D000188 ORTHO05D005675 2.9e-54 216.9 281 48.8
Atru.chr13.1255 Acer truncatum HOM05D000188 ORTHO05D005675 2.5e-53 213.8 268 52.6
FAN04G2787 Fragaria x ananassa HOM05D000188 ORTHO05D005675 2.8e-52 210.3 271 48.0
VMungo0331G0331 Vigna mungo HOM05D000188 ORTHO05D005675 6.1e-52 209.1 275 48.4
CANSAT25G0411 Cannabis sativa HOM05D000188 ORTHO05D005675 8.0e-52 208.8 272 50.7
Eucgr.E02072 Eucalyptus grandis HOM05D000188 ORTHO05D005675 8.0e-52 208.8 279 49.8
FAN18G4400 Fragaria x ananassa HOM05D000188 ORTHO05D005675 8.0e-52 208.8 274 48.5
arahy.Tifrunner.gnm1.ann1.BEB4AA Arachis hypogaea HOM05D000188 ORTHO05D005675 1.0e-51 208.4 271 49.1
Manes.03G203500 Manihot esculenta HOM05D000188 ORTHO05D005675 1.0e-51 208.4 271 48.7
Migut.C00228 Erythranthe guttata HOM05D000188 ORTHO05D005675 1.4e-51 208.0 264 49.6
arahy.Tifrunner.gnm1.ann1.IL79Z4 Arachis hypogaea HOM05D000188 ORTHO05D005675 1.8e-51 207.6 271 48.7
Ca_23369_v3 Cicer arietinum L. HOM05D000188 ORTHO05D005675 1.8e-51 207.6 271 48.7
MBI05_g34465_MAGBIO Magnolia biondii HOM05D000188 ORTHO05D005675 3.0e-51 206.8 285 50.9
Gorai.009G282100 Gossypium raimondii HOM05D000188 ORTHO05D005675 4.0e-51 206.5 305 45.6
Cpa.g.sc66.83 Carica papaya HOM05D000188 ORTHO05D005675 6.8e-51 205.7 276 51.4
MELO3C010422.2 Cucumis melo HOM05D000188 ORTHO05D005675 6.8e-51 205.7 270 51.9
FvH4_5g37860 Fragaria vesca HOM05D000188 ORTHO05D005675 6.8e-51 205.7 274 48.2
Gohir.D05G269500 Gossypium hirsutum HOM05D000188 ORTHO05D005675 6.8e-51 205.7 305 45.6
Potri.002G093500 Populus trichocarpa HOM05D000188 ORTHO05D005675 1.2e-50 204.9 270 47.8
Lalb_Chr25g0281191 Lupinus albus HOM05D000188 ORTHO05D005675 1.5e-50 204.5 291 45.0
Glyma.07G037400 Glycine max HOM05D000188 ORTHO05D005675 2.0e-50 204.1 276 47.1
Glyma.16G006800 Glycine max HOM05D000188 ORTHO05D005675 3.4e-50 203.4 276 46.0
FAN08G1634 Fragaria x ananassa HOM05D000188 ORTHO05D005675 5.7e-50 202.6 271 47.2
ClCG11G015400 Citrullus lanatus HOM05D000188 ORTHO05D005675 7.5e-50 202.2 268 50.4
arahy.Tifrunner.gnm1.ann1.5SJ4SU Arachis hypogaea HOM05D000188 ORTHO05D005675 9.8e-50 201.8 271 49.1
Migut.C00230 Erythranthe guttata HOM05D000188 ORTHO05D005675 9.8e-50 201.8 264 50.0
CsaV3_4G028690 Cucumis sativus L. HOM05D000188 ORTHO05D005675 1.7e-49 201.1 270 51.5
TPR.G32505 Trifolium pratense HOM05D000188 ORTHO05D005675 1.7e-49 201.1 263 47.1
Phvul.010G130800 Phaseolus vulgaris HOM05D000188 ORTHO05D005675 3.7e-49 199.9 284 46.1
RcHm_v2.0_Chr7g0239841 Rosa chinensis HOM05D000188 ORTHO05D005675 3.7e-49 199.9 259 48.6
Sabra05G0126300 Salix brachista HOM05D000188 ORTHO05D005675 1.1e-48 198.4 267 48.3
Gohir.A05G267700 Gossypium hirsutum HOM05D000188 ORTHO05D005675 1.8e-48 197.6 305 45.6
Medtr8g020390 Medicago truncatula HOM05D000188 ORTHO05D005675 2.4e-48 197.2 270 47.0
FAN13G2300 Fragaria x ananassa HOM05D000188 ORTHO05D005675 4.1e-48 196.4 271 46.5
Sed0019055 Sechium edule HOM05D000188 ORTHO05D005675 7.0e-48 195.7 278 48.9
PSO133G0009 Papaver somniferum HOM05D000188 ORTHO05D005675 3.8e-46 189.9 301 44.5
CAN.G517.9 Capsicum annuum HOM05D000188 ORTHO05D005675 8.6e-46 188.7 267 46.4
Psat4g183080 Pisum sativum HOM05D000188 ORTHO05D005675 1.9e-45 187.6 264 45.5
Potri.005G168300 Populus trichocarpa HOM05D000188 ORTHO05D005675 1.9e-45 187.6 274 46.7
PSO541G2134 Papaver somniferum HOM05D000188 ORTHO05D005675 2.5e-45 187.2 331 41.7
Aqoxy6G00581 Aquilegia oxysepala HOM05D000188 ORTHO05D005675 1.4e-43 181.4 283 47.3
THA.LOC104814664 Tarenaya hassleriana HOM05D000188 ORTHO05D005675 1.8e-43 181.0 280 43.2
MSTRG.24962 Avicennia marina HOM05D000188 ORTHO05D005675 2.3e-43 180.6 268 47.8
DCAR_001037 Daucus carota HOM05D000188 ORTHO05D005675 8.9e-43 178.7 296 45.6
Sed0015371 Sechium edule HOM05D000188 ORTHO05D005675 1.2e-42 178.3 256 50.0
Lj3g0012997 Lotus japonicus HOM05D000188 ORTHO05D005675 2.0e-42 177.6 291 43.3
Sabra02G0073800 Salix brachista HOM05D000188 ORTHO05D005675 2.6e-42 177.2 269 44.2
AUR62018362 Chenopodium quinoa HOM05D000188 ORTHO05D005675 2.2e-41 174.1 270 43.0
Lsat_1_v5_gn_1_4241 Lactuca sativa HOM05D000188 ORTHO05D005675 6.4e-41 172.6 264 47.0
Sc14g0007270 Simmondsia chinensis HOM05D000188 ORTHO05D005675 1.9e-40 171.0 270 43.7
Thhalv10024227m.g Eutrema salsugineum HOM05D000188 ORTHO05D005675 1.2e-39 168.3 277 43.0
Aa31LG2G20470 Aethionema arabicum HOM05D000188 ORTHO05D005675 1.6e-39 167.9 271 44.6
Actinidia10304 Actinidia chinensis HOM05D000188 ORTHO05D005675 3.9e-38 163.3 118 73.7
Carub.0007s1050 Capsella rubella HOM05D000188 ORTHO05D005675 5.0e-38 162.9 268 42.9
CARHR238010 Cardamine hirsuta HOM05D000188 ORTHO05D005675 1.5e-37 161.4 273 42.5
Migut.O00725 Erythranthe guttata HOM05D000188 ORTHO05D005675 2.5e-37 160.6 228 47.8
Sp7g27950 Schrenkiella parvula HOM05D000188 ORTHO05D005675 4.3e-37 159.8 287 43.6
BraA03t15001Z Brassica rapa HOM05D000188 ORTHO05D005675 1.4e-35 154.8 245 45.7
SGA_v2.0_scaffold267G46182 Striga asiatica HOM05D000188 ORTHO05D005675 1.8e-35 154.5 269 43.9
CDE10G0995 Ceratophyllum demersum HOM05D000188 ORTHO05D005675 2.3e-35 154.1 300 40.0
ECA247G2930 Erigeron canadensis HOM05D000188 ORTHO05D005675 2.3e-35 154.1 198 52.0
unitig_46.g18000 Utricularia gibba HOM05D000188 ORTHO05D005675 2.3e-35 154.1 271 41.7
A03p59450 Brassica napus HOM05D000188 ORTHO05D005675 5.2e-35 152.9 245 45.7
HanXRQChr02g0044691 Helianthus annuus HOM05D000188 ORTHO05D005675 5.8e-34 149.4 259 40.9
Oeu024550.1 Olea europaea HOM05D000188 ORTHO05D005675 1.7e-33 147.9 165 55.2
AUR62030301 Chenopodium quinoa HOM05D000188 ORTHO05D005675 2.9e-33 147.1 270 39.3
AL7G22100 Arabidopsis lyrata HOM05D000188 ORTHO05D005675 6.4e-33 146.0 271 39.1
EL10Ac4g08219 Beta vulgaris HOM05D000188 ORTHO05D005675 6.4e-33 146.0 310 38.1
AT4G30100 Arabidopsis thaliana HOM05D000188 ORTHO05D005675 8.3e-33 145.6 247 43.7
Ah.08g212920 Amaranthus hybridus HOM05D000188 ORTHO05D005675 1.9e-32 144.4 299 37.5
BcaNung00518 Brassica carinata HOM05D000188 ORTHO05D005675 2.4e-32 144.1 260 41.9
HanXRQChr04g0112991 Helianthus annuus HOM05D000188 ORTHO05D005675 1.6e-31 141.4 295 38.6
Migut.O00753 Erythranthe guttata HOM05D000188 ORTHO05D005675 6.0e-31 139.4 156 54.5
CDE10G1034 Ceratophyllum demersum HOM05D000188 ORTHO05D005675 1.0e-30 138.7 293 38.9
Hund26656 Selenicereus undatus HOM05D000188 ORTHO05D005675 3.0e-30 137.1 301 36.9
C07p57500 Brassica napus HOM05D000188 ORTHO05D005675 5.1e-30 136.3 263 40.7
BolC7t46217H Brassica oleracea HOM05D000188 ORTHO05D005675 5.1e-30 136.3 263 40.7
Zm00001eb224450 Zea mays HOM05D000188 ORTHO05D005675 8.6e-30 135.6 274 40.1
AL3G52810 Arabidopsis lyrata HOM05D000188 ORTHO05D005675 2.6e-26 124.0 125 60.0
AT2G19120 Arabidopsis thaliana HOM05D000188 ORTHO05D005675 4.4e-26 123.2 148 52.0
unitig_26.g9870 Utricularia gibba HOM05D000188 ORTHO05D005675 1.3e-25 121.7 239 40.2
Zm00001eb026030 Zea mays HOM05D000188 ORTHO05D005675 5.4e-24 116.3 248 36.3
ECA246G3036 Erigeron canadensis HOM05D000188 ORTHO05D005675 1.6e-23 114.8 94 64.9
Carub.0003s3335 Capsella rubella HOM05D000188 ORTHO05D005675 3.9e-22 110.2 103 60.2
HanXRQChr05g0162191 Helianthus annuus HOM05D000188 ORTHO05D005675 1.1e-21 108.6 153 49.0
ATR0564G361 Amborella trichopoda HOM05D000188 ORTHO05D005675 1.9e-21 107.8 288 34.7
Lj4A716T76 Lonicera japonica HOM05D000188 ORTHO05D005675 1.1e-19 102.1 213 35.7
Lj4A719T62 Lonicera japonica HOM05D000188 ORTHO05D005675 1.8e-19 101.3 213 35.7
Lsat_1_v5_gn_6_102281 Lactuca sativa HOM05D000188 ORTHO05D005675 9.9e-18 95.5 192 36.5
ATR0068G028 Amborella trichopoda HOM05D000188 ORTHO05D005675 2.9e-17 94.0 292 31.8
HPP92_006003 Vanilla planifolia HOM05D000188 ORTHO05D005675 4.6e-15 86.7 275 31.6
CARHR109630 Cardamine hirsuta HOM05D000188 ORTHO05D005675 5.6e-13 79.7 108 50.0
SHI09407 Sapria himalayana HOM05D000188 ORTHO05D005675 6.9e-11 72.8 103 44.7
SEGI_13100 Sequoiadendron giganteum HOM05D000188 ORTHO05D005675 2.7e-07 60.8 258 25.6


User provided reference genes

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