Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv07760 Davidia involucrata HOM05D005617 ORTHO05D006847 2.2e-157 558.9 287 100.0
CSS0012605 Camellia sinensis var. sinensis HOM05D005617 ORTHO05D006847 1.4e-138 496.5 287 87.1
Hma1.2p1_0075F.1_g039170 Hydrangea macrophylla HOM05D005617 ORTHO05D006847 7.8e-134 480.7 288 86.1
GSVIVG01023530001 Vitis vinifera HOM05D005617 ORTHO05D006847 1.4e-130 469.9 287 82.9
TAR636G3199 Trochodendron aralioides HOM05D005617 ORTHO05D006847 6.8e-130 467.6 287 82.9
Actinidia34747 Actinidia chinensis HOM05D005617 ORTHO05D006847 1.9e-124 449.5 287 78.4
Sc06g0003230 Simmondsia chinensis HOM05D005617 ORTHO05D006847 1.2e-121 440.3 288 76.7
Aqoxy2G03651 Aquilegia oxysepala HOM05D005617 ORTHO05D006847 8.3e-120 434.1 287 76.3
MD09G1286500 Malus domestica HOM05D005617 ORTHO05D006847 8.3e-120 434.1 287 77.0
Prupe.6G349300 Prunus persica HOM05D005617 ORTHO05D006847 1.4e-119 433.3 287 76.3
MD17G1278900 Malus domestica HOM05D005617 ORTHO05D006847 1.9e-119 433.0 287 77.0
CiPaw.08G118100 Carya illinoinensis HOM05D005617 ORTHO05D006847 7.8e-118 427.6 288 76.7
CANSAT54G2044 Cannabis sativa HOM05D005617 ORTHO05D006847 5.1e-117 424.9 288 75.0
CsaV3_1G036020 Cucumis sativus L. HOM05D005617 ORTHO05D006847 1.1e-116 423.7 287 76.0
Gorai.007G345400 Gossypium raimondii HOM05D005617 ORTHO05D006847 1.1e-116 423.7 289 74.0
Manes.08G138800 Manihot esculenta HOM05D005617 ORTHO05D006847 2.5e-116 422.5 287 73.9
Sed0027621 Sechium edule HOM05D005617 ORTHO05D006847 2.5e-116 422.5 287 74.6
Gohir.A11G299400 Gossypium hirsutum HOM05D005617 ORTHO05D006847 3.3e-116 422.2 289 74.4
TWI56G1032 Tripterygium wilfordii HOM05D005617 ORTHO05D006847 3.3e-116 422.2 288 75.0
Thecc.05G271700 Theobroma cacao HOM05D005617 ORTHO05D006847 4.3e-116 421.8 289 74.4
Gohir.D11G314200 Gossypium hirsutum HOM05D005617 ORTHO05D006847 7.3e-116 421.0 289 73.7
Duzib177G1169 Durio zibethinus HOM05D005617 ORTHO05D006847 2.1e-115 419.5 289 74.4
MBI10_g30078_MAGBIO Magnolia biondii HOM05D005617 ORTHO05D006847 2.3e-114 416.0 289 75.1
PGR142G1895 Punica granatum HOM05D005617 ORTHO05D006847 4.0e-114 415.2 288 75.3
Eucgr.L02949 Eucalyptus grandis HOM05D005617 ORTHO05D006847 6.8e-114 414.5 254 83.9
HanXRQChr14g0455191 Helianthus annuus HOM05D005617 ORTHO05D006847 8.9e-114 414.1 287 74.9
Potri.013G046200 Populus trichocarpa HOM05D005617 ORTHO05D006847 2.0e-113 412.9 287 72.8
Eucgr.B02145 Eucalyptus grandis HOM05D005617 ORTHO05D006847 3.4e-113 412.1 254 83.1
QL03p030835 Quercus lobata HOM05D005617 ORTHO05D006847 3.4e-113 412.1 287 74.2
Lj2A41G63 Lonicera japonica HOM05D005617 ORTHO05D006847 1.1e-111 407.1 256 81.2
EL10Ac4g09040 Beta vulgaris HOM05D005617 ORTHO05D006847 1.4e-111 406.8 292 72.3
Ciclev10021517m.g Citrus clementina HOM05D005617 ORTHO05D006847 3.2e-111 405.6 287 71.1
AUR62004851 Chenopodium quinoa HOM05D005617 ORTHO05D006847 4.1e-111 405.2 296 71.3
MSTRG.27377 Avicennia marina HOM05D005617 ORTHO05D006847 9.2e-111 404.1 283 70.7
PSO017G5929 Papaver somniferum HOM05D005617 ORTHO05D006847 9.2e-111 404.1 297 70.7
COL.COLO4_15469 Corchorus olitorius HOM05D005617 ORTHO05D006847 6.0e-110 401.4 249 80.7
Cc02_g08910 Coffea canephora HOM05D005617 ORTHO05D006847 1.3e-109 400.2 291 71.8
Phvul.006G105300 Phaseolus vulgaris HOM05D005617 ORTHO05D006847 6.6e-109 397.9 288 68.8
RcHm_v2.0_Chr3g0449811 Rosa chinensis HOM05D005617 ORTHO05D006847 1.1e-108 397.1 287 69.7
VMungo0540G0455 Vigna mungo HOM05D005617 ORTHO05D006847 3.3e-108 395.6 288 69.1
Glyma.19G248200 Glycine max HOM05D005617 ORTHO05D006847 4.3e-108 395.2 288 68.8
Rhsim09G0137600 Rhododendron simsii HOM05D005617 ORTHO05D006847 5.6e-108 394.8 287 69.0
SalBow3G1639 Salvia bowleyana HOM05D005617 ORTHO05D006847 4.7e-107 391.7 288 69.1
PSO063G2686 Papaver somniferum HOM05D005617 ORTHO05D006847 1.8e-106 389.8 298 68.1
THA.LOC104805778 Tarenaya hassleriana HOM05D005617 ORTHO05D006847 1.8e-106 389.8 287 69.0
Migut.F00803 Erythranthe guttata HOM05D005617 ORTHO05D006847 2.4e-106 389.4 289 69.9
ECA238G4125 Erigeron canadensis HOM05D005617 ORTHO05D006847 3.1e-106 389.0 295 68.1
Sopen04g005070 Solanum pennellii HOM05D005617 ORTHO05D006847 1.2e-105 387.1 281 70.1
FAN14G0582 Fragaria x ananassa HOM05D005617 ORTHO05D006847 2.0e-105 386.3 287 68.3
Solyc04g009940.4 Solanum lycopersicum HOM05D005617 ORTHO05D006847 2.6e-105 386.0 281 70.1
Glyma.03G250700 Glycine max HOM05D005617 ORTHO05D006847 4.4e-105 385.2 288 68.1
Potri.019G018300 Populus trichocarpa HOM05D005617 ORTHO05D006847 4.4e-105 385.2 266 72.6
Cfa006341 Carpinus fangiana HOM05D005617 ORTHO05D006548 9.9e-105 384.0 255 77.3
Peaxi162Scf00135g00418 Petunia axillaris HOM05D005617 ORTHO05D006847 2.2e-104 382.9 284 69.7
CAN.G1609.4 Capsicum annuum HOM05D005617 ORTHO05D006847 2.9e-104 382.5 261 74.3
HPP92_002964 Vanilla planifolia HOM05D005617 ORTHO05D006847 3.8e-104 382.1 253 72.7
Oeu012233.2 Olea europaea HOM05D005617 ORTHO05D006847 4.9e-104 381.7 294 68.4
DCAR_023096 Daucus carota HOM05D005617 ORTHO05D006847 2.4e-103 379.4 245 76.7
Ah.06g191860 Amaranthus hybridus HOM05D005617 ORTHO05D006847 5.4e-103 378.3 274 71.5
FAN05G0714 Fragaria x ananassa HOM05D001473 ORTHO05D003934 5.4e-103 378.3 286 67.5
Lsat_1_v5_gn_2_108021 Lactuca sativa HOM05D005617 ORTHO05D006847 7.1e-103 377.9 284 68.0
FAN05G5604 Fragaria x ananassa HOM05D001473 ORTHO05D003934 6.0e-102 374.8 286 67.1
PGSC0003DMG400011501 Solanum tuberosum HOM05D005617 ORTHO05D006847 5.1e-101 371.7 240 75.8
Lj1g0025948 Lotus japonicus HOM05D005617 ORTHO05D006847 6.6e-101 371.3 288 65.6
Psat3g006600 Pisum sativum HOM05D005617 ORTHO05D006847 1.1e-100 370.5 288 65.3
Thhalv10008167m.g Eutrema salsugineum HOM05D005617 ORTHO05D006847 1.9e-100 369.8 287 66.2
arahy.Tifrunner.gnm1.ann1.9NRB0Q Arachis hypogaea HOM05D005617 ORTHO05D006847 1.2e-99 367.1 291 65.3
arahy.Tifrunner.gnm1.ann1.X65E39 Arachis hypogaea HOM05D005617 ORTHO05D006847 2.1e-99 366.3 291 64.9
Nitab4.5_0003768g0040 Nicotiana tabacum HOM05D005617 ORTHO05D006847 2.1e-99 366.3 220 82.3
Sp1g07300 Schrenkiella parvula HOM05D005617 ORTHO05D006847 2.8e-99 365.9 289 66.4
Nitab4.5_0003780g0030 Nicotiana tabacum HOM05D005617 ORTHO05D006847 3.6e-99 365.5 269 71.4
CARHR008550 Cardamine hirsuta HOM05D005617 ORTHO05D006847 8.1e-99 364.4 288 65.6
Carub.0001s0800 Capsella rubella HOM05D005617 ORTHO05D006847 1.4e-98 363.6 288 64.2
AL1G19070 Arabidopsis lyrata HOM05D005617 ORTHO05D006847 9.0e-98 360.9 288 66.0
BraA06t23768Z Brassica rapa HOM05D005617 ORTHO05D006847 9.9e-97 357.5 290 64.1
BcaC05g24795 Brassica carinata HOM05D005617 ORTHO05D006847 1.7e-96 356.7 290 63.8
BolC5t29432H Brassica oleracea HOM05D005617 ORTHO05D006847 1.7e-96 356.7 290 63.8
AT1G08640 Arabidopsis thaliana HOM05D005617 ORTHO05D006847 4.9e-96 355.1 288 65.6
C05p06720 Brassica napus HOM05D005617 ORTHO05D006847 4.9e-96 355.1 290 63.8
BcaB03g13320 Brassica carinata HOM05D005617 ORTHO05D006847 1.9e-95 353.2 289 65.1
ATR0736G212 Amborella trichopoda HOM05D005617 ORTHO05D006847 2.4e-95 352.8 268 67.2
FAN14G1026 Fragaria x ananassa HOM05D001473 ORTHO05D003934 3.2e-95 352.4 266 67.3
BcaB07g34105 Brassica carinata HOM05D005617 ORTHO05D006847 7.1e-95 351.3 291 63.2
TPR.G6961 Trifolium pratense HOM05D005617 ORTHO05D006847 1.2e-94 350.5 289 62.3
Lalb_Chr04g0262061 Lupinus albus HOM05D005617 ORTHO05D006847 6.0e-94 348.2 269 66.2
Haze_04439 Corylus avellana HOM05D005617 ORTHO05D006847 1.3e-93 347.1 285 66.0
Sabra13G0042400 Salix brachista HOM05D005617 ORTHO05D006847 4.3e-92 342.0 310 61.3
unitig_32.g10679 Utricularia gibba HOM05D005617 ORTHO05D006847 4.3e-92 342.0 248 69.4
MELO3C020566.2 Cucumis melo HOM05D005617 ORTHO05D006847 9.6e-92 340.9 295 64.1
Aa31sc110G20 Aethionema arabicum HOM05D005617 ORTHO05D006847 1.4e-90 337.0 266 63.9
CDE04G1987 Ceratophyllum demersum HOM05D005617 ORTHO05D006847 1.4e-90 337.0 288 63.9
Medtr7g115670 Medicago truncatula HOM05D005617 ORTHO05D006847 1.4e-90 337.0 269 65.1
Nn1g08261 Nelumbo nucifera HOM05D005617 ORTHO05D006847 3.8e-88 328.9 274 65.0
Hund22155 Selenicereus undatus HOM05D005617 ORTHO05D006847 4.9e-88 328.6 293 61.4
A06p05600 Brassica napus HOM05D005617 ORTHO05D006847 1.4e-87 327.0 269 63.6
FAN09G1753 Fragaria x ananassa HOM05D001473 ORTHO05D003934 6.7e-85 318.2 245 67.3
SEGI_39921 Sequoiadendron giganteum HOM05D005617 ORTHO05D006847 8.7e-85 317.8 264 59.1
FvH4_6g01960 Fragaria vesca HOM05D005617 ORTHO05D006847 1.9e-84 316.6 242 67.4
ClCG03G000920 Citrullus lanatus HOM05D005617 ORTHO05D006847 1.1e-82 310.8 242 70.2
AUR62040935 Chenopodium quinoa HOM05D005617 ORTHO05D006847 4.6e-78 295.4 183 77.6
SGA_v2.0_scaffold380G50362 Striga asiatica HOM05D005617 ORTHO05D006847 2.3e-77 293.1 334 51.2
Zm00001eb261540 Zea mays HOM05D005617 ORTHO05D006847 1.6e-75 287.0 231 58.0
Os08g0127600 Oryza sativa ssp. japonica HOM05D005617 ORTHO05D006847 4.0e-74 282.3 222 59.5
Atru.chr2.967 Acer truncatum HOM05D005617 ORTHO05D006847 5.3e-74 282.0 175 79.4
Os10g0478100 Oryza sativa ssp. japonica HOM05D005617 ORTHO05D006847 2.3e-69 266.5 237 55.7
Ca_09461_v3 Cicer arietinum L. HOM05D005617 ORTHO05D006847 3.3e-68 262.7 169 73.4
Mapoly0036s0041 Marchantia polymorpha HOM05D005617 ORTHO05D006847 5.7e-68 261.9 267 52.1
SMO116G0251 Selaginella moellendorffii HOM05D005617 ORTHO05D006847 3.4e-65 252.7 228 53.1
vmacro10358 Vaccinium macrocarpon HOM05D005617 ORTHO05D006847 5.0e-64 248.8 252 52.4
FAN02G1215 Fragaria x ananassa HOM05D001473 ORTHO05D003934 1.2e-62 244.2 266 51.9
AagrBONN_evm.TU.Sc2ySwM_344.3205 Anthoceros agrestis HOM05D005617 ORTHO05D006847 3.3e-60 236.1 240 49.2
Pp3c23_15250 Physcomitrium patens HOM05D005617 ORTHO05D006847 4.8e-59 232.3 233 51.1
Zm00001eb173360 Zea mays HOM05D005617 ORTHO05D006847 4.8e-59 232.3 186 58.6
Cpa.g.sc162.39 Carica papaya HOM05D005617 ORTHO05D006847 2.6e-57 226.5 168 69.6
C08p12050 Brassica napus HOM05D005617 ORTHO05D006847 1.1e-55 221.1 240 54.2
TAR365G0454 Trochodendron aralioides HOM05D005617 ORTHO05D006847 3.0e-53 213.0 228 54.8
CDE04G2248 Ceratophyllum demersum HOM05D005617 ORTHO05D006847 7.0e-50 201.8 112 86.6
Sabra19G0030400 Salix brachista HOM05D001473 ORTHO05D003934 8.5e-40 168.3 130 66.9
CBR_g63068 Chara braunii HOM05D005617 ORTHO05D006847 8.0e-38 161.8 224 41.1
TPR.G11236 Trifolium pratense HOM05D005617 ORTHO05D006847 6.5e-32 142.1 112 60.7
SHI23140 Sapria himalayana HOM05D005617 ORTHO05D001257 9.4e-31 138.3 188 42.6
BcaC07g38407 Brassica carinata HOM05D005617 ORTHO05D006847 1.8e-29 134.0 133 51.1
Cpa.g.c45301 Carica papaya HOM05D005617 ORTHO05D006847 5.2e-29 132.5 74 83.8
C08p11620 Brassica napus HOM05D005617 ORTHO05D006847 5.4e-26 122.5 81 67.9
C08p11690 Brassica napus HOM05D005617 ORTHO05D006847 5.4e-26 122.5 81 66.7
C08p11650 Brassica napus HOM05D005617 ORTHO05D006847 4.5e-25 119.4 81 66.7
BolC8t48841H Brassica oleracea HOM05D005617 ORTHO05D006847 4.2e-23 112.8 82 65.9
FAN14G4186 Fragaria x ananassa HOM05D005617 ORTHO05D006847 2.4e-18 97.1 103 54.4
FAN14G5978 Fragaria x ananassa HOM05D005617 ORTHO05D006847 2.4e-18 97.1 103 54.4
FvH4_6g01860 Fragaria vesca HOM05D005617 ORTHO05D006847 3.2e-18 96.7 103 53.4
FAN09G3889 Fragaria x ananassa HOM05D005617 ORTHO05D006847 9.2e-18 95.1 103 53.4
FAN14G3066 Fragaria x ananassa HOM05D005617 ORTHO05D006847 1.2e-17 94.7 103 53.4
PRCOL_00003784 Prasinoderma coloniale HOM05D005182 ORTHO05D006847 1.2e-17 94.7 167 31.7
Rhsim04G0044500 Rhododendron simsii HOM05D005617 ORTHO05D000521 1.3e-16 91.3 72 65.3
BcaC07g38438 Brassica carinata HOM05D005617 ORTHO05D006847 1.7e-16 90.9 80 60.0
PRCOL_00005829 Prasinoderma coloniale HOM05D005617 ORTHO05D006847 3.9e-16 89.7 197 31.0
TPR.G6979 Trifolium pratense HOM05D005617 ORTHO05D006847 2.8e-14 83.6 106 44.3
Phvul.005G084700 Phaseolus vulgaris HOM05D005617 ORTHO05D006847 1.8e-13 80.9 132 40.2
Atru.chr2.966 Acer truncatum HOM05D005617 ORTHO05D006847 4.0e-13 79.7 54 74.1
BcaB01g02218 Brassica carinata HOM05D005617 ORTHO05D006847 5.2e-13 79.3 52 75.0
TPR.G21937 Trifolium pratense HOM05D005617 ORTHO05D006847 1.3e-11 74.7 60 61.7
Cre03.g171100 Chlamydomonas reinhardtii HOM05D005617 ORTHO05D006847 7.8e-09 65.5 209 28.2


User provided reference genes

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