Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv07714 Davidia involucrata HOM05D003819 ORTHO05D005291 0.0e+00 1396.3 698 100.0
CSS0043691 Camellia sinensis var. sinensis HOM05D003819 ORTHO05D005291 1.0e-272 943.3 735 67.1
Rhsim06G0130800 Rhododendron simsii HOM05D003819 ORTHO05D005291 1.8e-272 942.6 735 65.7
Nitab4.5_0000249g0240 Nicotiana tabacum HOM05D003819 ORTHO05D005291 1.3e-270 936.4 726 66.3
Actinidia11157 Actinidia chinensis HOM05D003819 ORTHO05D005291 1.1e-269 933.3 734 65.7
Nitab4.5_0006875g0030 Nicotiana tabacum HOM05D003819 ORTHO05D005291 2.2e-267 925.6 727 65.5
Sopen12g006260 Solanum pennellii HOM05D003819 ORTHO05D005291 1.4e-266 922.9 733 65.3
Lj1P684T13 Lonicera japonica HOM05D003819 ORTHO05D005291 9.3e-266 920.2 734 65.8
Solyc12g010900.1 Solanum lycopersicum HOM05D003819 ORTHO05D005291 7.9e-265 917.1 733 64.9
DCAR_021294 Daucus carota HOM05D003819 ORTHO05D005291 2.3e-264 915.6 730 63.7
PGSC0003DMG400007856 Solanum tuberosum HOM05D003819 ORTHO05D005291 9.6e-263 910.2 735 64.5
PGSC0003DMG400035320 Solanum tuberosum HOM05D003819 ORTHO05D005291 1.0e-259 900.2 723 64.9
Migut.M00265 Erythranthe guttata HOM05D003819 ORTHO05D005291 2.5e-258 895.6 741 63.4
Peaxi162Scf00384g00211 Petunia axillaris HOM05D003819 ORTHO05D005291 4.2e-258 894.8 699 65.8
Solyc07g055120.4 Solanum lycopersicum HOM05D003819 ORTHO05D005291 4.2e-258 894.8 691 66.7
CAN.G1148.8 Capsicum annuum HOM05D003819 ORTHO05D005291 2.7e-257 892.1 730 63.7
Nitab4.5_0013227g0010 Nicotiana tabacum HOM05D003819 ORTHO05D005291 3.0e-256 888.6 734 63.4
Sopen07g027110 Solanum pennellii HOM05D003819 ORTHO05D005291 1.1e-253 880.2 722 63.4
Cc05_g08390 Coffea canephora HOM05D003819 ORTHO05D005291 9.0e-253 877.1 723 63.5
MSTRG.15087 Avicennia marina HOM05D003819 ORTHO05D005291 5.0e-251 871.3 725 62.1
TAR629G3160 Trochodendron aralioides HOM05D003819 ORTHO05D005291 8.8e-248 860.5 739 60.8
Cc00_g28410 Coffea canephora HOM05D003819 ORTHO05D005291 2.5e-247 859.0 723 62.7
SalBow7G4473 Salvia bowleyana HOM05D003819 ORTHO05D005291 4.3e-247 858.2 720 62.2
CAN.G1081.14 Capsicum annuum HOM05D003819 ORTHO05D005291 1.4e-245 853.2 722 61.6
Lsat_1_v5_gn_8_141221 Lactuca sativa HOM05D003819 ORTHO05D005291 2.6e-244 849.0 724 61.9
GSVIVG01020711001 Vitis vinifera HOM05D003819 ORTHO05D005291 5.9e-244 847.8 722 61.5
Duzib264G1063 Durio zibethinus HOM05D003819 ORTHO05D005291 1.3e-243 846.7 721 60.7
Gohir.D12G091900 Gossypium hirsutum HOM05D003819 ORTHO05D005291 5.0e-243 844.7 721 60.6
Gohir.A12G077800 Gossypium hirsutum HOM05D003819 ORTHO05D005291 6.5e-243 844.3 721 60.5
Gorai.008G099500 Gossypium raimondii HOM05D003819 ORTHO05D005291 6.5e-243 844.3 721 60.5
COL.COLO4_33586 Corchorus olitorius HOM05D003819 ORTHO05D005291 4.2e-242 841.6 726 60.2
Prupe.3G117700 Prunus persica HOM05D003819 ORTHO05D005291 2.1e-241 839.3 738 60.0
FAN09G4766 Fragaria x ananassa HOM05D003819 ORTHO05D005291 5.1e-240 834.7 733 60.7
FAN02G3241 Fragaria x ananassa HOM05D003819 ORTHO05D005291 4.4e-239 831.6 733 60.6
FvH4_6g27480 Fragaria vesca HOM05D003819 ORTHO05D005291 9.7e-239 830.5 731 60.5
ECA233G0398 Erigeron canadensis HOM05D003819 ORTHO05D005291 1.3e-238 830.1 726 59.6
HanXRQChr17g0558991 Helianthus annuus HOM05D003819 ORTHO05D005291 2.2e-238 829.3 720 60.1
Thecc.01G151000 Theobroma cacao HOM05D003819 ORTHO05D005291 2.2e-238 829.3 727 60.1
FAN14G1852 Fragaria x ananassa HOM05D003819 ORTHO05D005291 1.8e-237 826.2 731 60.2
MD09G1236800 Malus domestica HOM05D003819 ORTHO05D005291 1.8e-237 826.2 729 60.6
FAN05G0664 Fragaria x ananassa HOM05D003819 ORTHO05D005291 5.3e-237 824.7 733 59.2
RcHm_v2.0_Chr2g0129761 Rosa chinensis HOM05D003819 ORTHO05D005291 1.5e-236 823.2 738 59.6
Cfa023595 Carpinus fangiana HOM05D003819 ORTHO05D005291 2.0e-236 822.8 726 60.1
CiPaw.03G195200 Carya illinoinensis HOM05D003819 ORTHO05D005291 8.5e-235 817.4 737 59.2
Potri.014G142600 Populus trichocarpa HOM05D003819 ORTHO05D005291 2.5e-234 815.8 730 58.9
MD17G1266700 Malus domestica HOM05D003819 ORTHO05D005291 5.5e-234 814.7 735 61.4
Atru.chr6.2788 Acer truncatum HOM05D003819 ORTHO05D005291 3.6e-233 812.0 728 59.5
ClCG07G002740 Citrullus lanatus HOM05D003819 ORTHO05D005291 4.7e-233 811.6 733 58.3
Sabra14G0107700 Salix brachista HOM05D003819 ORTHO05D005291 6.1e-233 811.2 730 58.4
PGR142G0379 Punica granatum HOM05D003819 ORTHO05D005291 8.0e-233 810.8 726 59.8
QL08p041841 Quercus lobata HOM05D003819 ORTHO05D005291 8.0e-233 810.8 737 58.2
MELO3C018720.2 Cucumis melo HOM05D003819 ORTHO05D005291 1.4e-232 810.1 727 58.6
Oeu058996.1 Olea europaea HOM05D003819 ORTHO05D005291 1.4e-232 810.1 726 60.5
Eucgr.K01130 Eucalyptus grandis HOM05D003819 ORTHO05D005291 3.7e-230 802.0 726 58.1
MBI06_g08600_MAGBIO Magnolia biondii HOM05D003819 ORTHO05D005291 2.4e-229 799.3 725 59.0
SGA_v2.0_scaffold9G04831 Striga asiatica HOM05D003819 ORTHO05D005291 7.0e-229 797.7 729 57.8
Manes.17G056400 Manihot esculenta HOM05D003819 ORTHO05D005291 1.0e-227 793.9 727 57.8
Cpa.g.sc52.168 Carica papaya HOM05D003819 ORTHO05D005291 5.0e-227 791.6 731 57.9
CsaV3_7G005710 Cucumis sativus L. HOM05D003819 ORTHO05D005291 5.0e-227 791.6 732 57.1
VMungo1127G0295 Vigna mungo HOM05D003819 ORTHO05D005291 1.5e-226 790.0 726 57.6
Sed0027609 Sechium edule HOM05D003819 ORTHO05D005291 2.5e-226 789.3 728 56.6
CANSAT64G0548 Cannabis sativa HOM05D003819 ORTHO05D005291 4.7e-225 785.0 725 58.1
Phvul.011G129700 Phaseolus vulgaris HOM05D003819 ORTHO05D005291 4.7e-225 785.0 730 56.8
Aqoxy1G02044 Aquilegia oxysepala HOM05D003819 ORTHO05D005291 3.4e-223 778.9 736 54.9
Lalb_Chr03g0029931 Lupinus albus HOM05D003819 ORTHO05D005291 5.7e-223 778.1 737 56.7
vmacro12379 Vaccinium macrocarpon HOM05D003819 ORTHO05D005291 1.3e-222 776.9 704 59.8
Lalb_Chr22g0356941 Lupinus albus HOM05D003819 ORTHO05D005291 1.7e-222 776.5 721 56.0
PSO229G0146 Papaver somniferum HOM05D003819 ORTHO05D005291 2.8e-222 775.8 717 56.5
Manes.17G056300 Manihot esculenta HOM05D003819 ORTHO05D005291 3.7e-222 775.4 717 56.8
PSO675G1769 Papaver somniferum HOM05D003819 ORTHO05D005291 3.7e-222 775.4 749 54.9
Sc21g0004140 Simmondsia chinensis HOM05D003819 ORTHO05D005291 3.7e-222 775.4 724 57.2
Potri.011G066700 Populus trichocarpa HOM05D003819 ORTHO05D005291 6.3e-222 774.6 722 55.8
Duzib235G0786 Durio zibethinus HOM05D003819 ORTHO05D005291 1.4e-221 773.5 730 56.2
Glyma.06G277000 Glycine max HOM05D003819 ORTHO05D005291 3.1e-221 772.3 731 56.9
Glyma.12G128600 Glycine max HOM05D003819 ORTHO05D005291 1.6e-220 770.0 724 57.0
Medtr4g080020 Medicago truncatula HOM05D003819 ORTHO05D005291 2.0e-220 769.6 724 56.6
Lj3g0009870 Lotus japonicus HOM05D003819 ORTHO05D005291 7.7e-220 767.7 730 56.3
COL.COLO4_31287 Corchorus olitorius HOM05D003819 ORTHO05D005291 2.9e-219 765.8 726 55.4
Haze_13379 Corylus avellana HOM05D003819 ORTHO05D005291 5.0e-219 765.0 694 58.6
Ciclev10014472m.g Citrus clementina HOM05D003819 ORTHO05D005291 1.5e-218 763.5 723 54.9
TPR.G4345 Trifolium pratense HOM05D003819 ORTHO05D005291 2.7e-217 759.2 723 56.0
Ca_18872_v3 Cicer arietinum L. HOM05D003819 ORTHO05D005291 8.0e-217 757.7 725 56.0
BcaB06g29258 Brassica carinata HOM05D003819 ORTHO05D005291 2.3e-216 756.1 724 54.8
Sabra11G0048300 Salix brachista HOM05D003819 ORTHO05D005291 4.0e-216 755.4 717 55.2
Aa31LG1G24420 Aethionema arabicum HOM05D003819 ORTHO05D005291 6.8e-216 754.6 725 55.0
BcaNung03224 Brassica carinata HOM05D003819 ORTHO05D005291 1.5e-215 753.4 731 55.3
TWI14G0201 Tripterygium wilfordii HOM05D003819 ORTHO05D005291 1.5e-215 753.4 724 56.8
Peaxi162Scf00469g00034 Petunia axillaris HOM05D003819 ORTHO05D005291 9.8e-215 750.7 574 66.0
BraA04t18686Z Brassica rapa HOM05D003819 ORTHO05D005291 1.7e-214 750.0 722 55.1
Dinv16776 Davidia involucrata HOM05D003819 ORTHO05D005291 2.2e-214 749.6 722 56.4
EL10Ac9g20949 Beta vulgaris HOM05D003819 ORTHO05D005291 4.8e-214 748.4 723 55.7
BcaC02g07227 Brassica carinata HOM05D003819 ORTHO05D005291 1.8e-213 746.5 725 54.5
A04p32330 Brassica napus HOM05D003819 ORTHO05D005291 1.8e-213 746.5 721 54.6
C04p69840 Brassica napus HOM05D003819 ORTHO05D005291 1.8e-213 746.5 725 54.5
BolC4t28484H Brassica oleracea HOM05D003819 ORTHO05D005291 1.8e-213 746.5 725 54.5
THA.LOC104802258 Tarenaya hassleriana HOM05D003819 ORTHO05D005291 3.1e-213 745.7 727 56.1
C04p03960 Brassica napus HOM05D003819 ORTHO05D005291 7.7e-212 741.1 728 54.3
Sp4g24760 Schrenkiella parvula HOM05D003819 ORTHO05D005291 1.0e-211 740.7 718 54.7
BolC4t22032H Brassica oleracea HOM05D003819 ORTHO05D005291 2.3e-211 739.6 755 53.0
CARHR137760 Cardamine hirsuta HOM05D003819 ORTHO05D005291 2.3e-211 739.6 727 54.5
QL05p047385 Quercus lobata HOM05D003819 ORTHO05D005291 1.1e-210 737.3 718 54.6
AL4G41180 Arabidopsis lyrata HOM05D003819 ORTHO05D005291 1.9e-210 736.5 727 54.1
BcaC02g12429 Brassica carinata HOM05D003819 ORTHO05D005291 1.9e-210 736.5 739 53.7
AT2G42620 Arabidopsis thaliana HOM05D003819 ORTHO05D005291 7.2e-210 734.6 727 54.5
AUR62042109 Chenopodium quinoa HOM05D003819 ORTHO05D005291 1.2e-209 733.8 730 53.8
Gorai.010G159500 Gossypium raimondii HOM05D003819 ORTHO05D005291 2.3e-208 729.6 721 53.1
Psat7g136560 Pisum sativum HOM05D003819 ORTHO05D005291 1.5e-207 726.9 745 53.0
Gohir.A06G131200 Gossypium hirsutum HOM05D003819 ORTHO05D005291 9.8e-207 724.2 718 53.3
Ah.01g003580 Amaranthus hybridus HOM05D003819 ORTHO05D005291 2.2e-206 723.0 723 54.6
Ciclev10017759m.g Citrus clementina HOM05D003819 ORTHO05D005291 5.4e-205 718.4 722 54.3
CiPaw.09G070200 Carya illinoinensis HOM05D003819 ORTHO05D005291 5.6e-202 708.4 717 52.4
CDE10G0290 Ceratophyllum demersum HOM05D003819 ORTHO05D005291 1.7e-195 686.8 729 52.4
Gorai.011G039300 Gossypium raimondii HOM05D003819 ORTHO05D005291 8.6e-195 684.5 720 51.4
Atru.chr10.1659 Acer truncatum HOM05D003819 ORTHO05D005291 9.5e-194 681.0 727 51.2
Gohir.D10G037300 Gossypium hirsutum HOM05D003819 ORTHO05D005291 1.2e-193 680.6 720 51.0
Gohir.D06G137250 Gossypium hirsutum HOM05D003819 ORTHO05D005291 9.8e-191 671.0 718 50.8
Gohir.A10G036700 Gossypium hirsutum HOM05D003819 ORTHO05D005291 1.3e-187 660.6 686 52.0
Nn1g09185 Nelumbo nucifera HOM05D003819 ORTHO05D005291 2.8e-185 652.9 612 57.8
ATR0602G021 Amborella trichopoda HOM05D003819 ORTHO05D005291 9.9e-183 644.4 734 48.4
AUR62040526 Chenopodium quinoa HOM05D003819 ORTHO05D005291 4.1e-181 639.0 690 52.3
Thhalv10017925m.g Eutrema salsugineum HOM05D003819 ORTHO05D005291 7.1e-181 638.3 722 50.1
Lj3g0006196 Lotus japonicus HOM05D003819 ORTHO05D005291 9.2e-181 637.9 710 50.4
THA.LOC104813346 Tarenaya hassleriana HOM05D003819 ORTHO05D005291 1.1e-173 614.4 723 46.5
SEGI_05136 Sequoiadendron giganteum HOM05D003819 ORTHO05D005291 2.5e-170 603.2 841 42.3
Dinv40684 Davidia involucrata HOM05D003819 ORTHO05D005291 6.2e-169 598.6 728 49.2
Actinidia10955 Actinidia chinensis HOM05D003819 ORTHO05D005291 1.4e-168 597.4 495 63.0
Zm00001eb270950 Zea mays HOM05D003819 ORTHO05D005291 6.2e-161 572.0 746 45.3
Haze_06225 Corylus avellana HOM05D003819 ORTHO05D005291 1.1e-157 561.2 687 46.1
Zm00001eb376660 Zea mays HOM05D003819 ORTHO05D005291 1.4e-157 560.8 750 44.4
Os06g0154200 Oryza sativa ssp. japonica HOM05D003819 ORTHO05D005291 2.1e-153 547.0 756 43.7
Thecc.06G169900 Theobroma cacao HOM05D003819 ORTHO05D005291 3.1e-144 516.5 547 51.9
Mapoly0113s0006 Marchantia polymorpha HOM05D003819 ORTHO05D005291 1.3e-142 511.1 754 41.4
Pp3c17_1180 Physcomitrium patens HOM05D003819 ORTHO05D005291 7.4e-138 495.4 815 37.8
SMO118G0454 Selaginella moellendorffii HOM05D003819 ORTHO05D005291 1.2e-135 488.0 737 39.6
Carub.0004s2507 Capsella rubella HOM05D003819 ORTHO05D005291 1.0e-131 474.9 570 47.5
unitig_85.g27374 Utricularia gibba HOM05D003819 ORTHO05D005291 1.3e-121 441.4 362 62.2
RcHm_v2.0_Chr2g0128411 Rosa chinensis HOM05D003819 ORTHO05D005291 1.4e-120 438.0 370 62.2
AagrBONN_evm.TU.Sc2ySwM_228.1793 Anthoceros agrestis HOM05D003819 ORTHO05D005291 5.7e-106 389.4 887 31.8
RcHm_v2.0_Chr2g0128401 Rosa chinensis HOM05D003819 ORTHO05D005291 1.0e-94 352.1 344 55.2
Thecc.K0007200 Theobroma cacao HOM05D003819 ORTHO05D005291 6.6e-94 349.4 240 71.7
Lj3g0028116 Lotus japonicus HOM05D003819 ORTHO05D005291 3.3e-93 347.1 435 45.7
SHI10509 Sapria himalayana HOM05D003819 ORTHO05D005291 1.0e-91 342.0 375 50.7
unitig_85.g27373 Utricularia gibba HOM05D003819 ORTHO05D005291 4.3e-85 320.1 316 52.2
Atru.chr11.57 Acer truncatum HOM05D003819 ORTHO05D005291 4.4e-82 310.1 412 45.6
Cfa000614 Carpinus fangiana HOM05D003819 ORTHO05D005291 1.1e-77 295.4 390 43.3
Oeu053232.1 Olea europaea HOM05D003819 ORTHO05D005291 3.3e-77 293.9 418 44.5
A05p03380 Brassica napus HOM05D003819 ORTHO05D005291 5.8e-58 229.9 178 65.2
Nn2g14348 Nelumbo nucifera HOM05D003819 ORTHO05D023588 9.6e-45 186.0 152 58.6
Ciclev10026180m.g Citrus clementina HOM05D003819 ORTHO05D005291 3.6e-44 184.1 190 52.6
Dinv24544 Davidia involucrata HOM05D003819 ORTHO05D005291 1.1e-37 162.5 147 55.8
AUR62037398 Chenopodium quinoa HOM05D003819 ORTHO05D005291 1.5e-37 162.2 99 75.8
FvH4_4g05521 Fragaria vesca HOM05D003819 ORTHO05D005291 3.8e-33 147.5 209 40.7
Nn6g34429 Nelumbo nucifera HOM05D003819 ORTHO05D019686 4.9e-33 147.1 150 54.0
Aqoxy450s002 Aquilegia oxysepala HOM05D003819 ORTHO05D019686 1.3e-28 132.5 102 58.8
Aqoxy7G03214 Aquilegia oxysepala HOM05D003819 ORTHO05D019686 1.3e-28 132.5 102 58.8
Nn1g05661 Nelumbo nucifera HOM05D003819 ORTHO05D005291 3.6e-23 114.4 77 70.1
A05p03390 Brassica napus HOM05D003819 ORTHO05D019686 1.1e-21 109.4 96 55.2
Psat3g013160 Pisum sativum HOM05D003819 ORTHO05D005291 2.5e-21 108.2 158 38.6
Lalb_Chr14g0367511 Lupinus albus HOM05D003819 ORTHO05D005291 5.7e-21 107.1 78 62.8
Cc02_g34240 Coffea canephora HOM05D003819 ORTHO05D023588 3.1e-19 101.3 93 53.8
FvH4_2g05661 Fragaria vesca HOM05D003819 ORTHO05D025473 4.1e-19 100.9 113 51.3
Nn1g05873 Nelumbo nucifera HOM05D003819 ORTHO05D005291 1.2e-18 99.4 80 62.5
FvH4_2g12921 Fragaria vesca HOM05D003819 ORTHO05D025473 3.8e-17 94.4 95 53.7
Haze_22749 Corylus avellana HOM05D003819 ORTHO05D005291 6.5e-17 93.6 93 52.7
Aqoxy450s003 Aquilegia oxysepala HOM05D003819 ORTHO05D023588 3.2e-16 91.3 104 49.0
Aqoxy7G03213 Aquilegia oxysepala HOM05D003819 ORTHO05D023588 3.2e-16 91.3 104 49.0
Nn3g18421 Nelumbo nucifera HOM05D003819 ORTHO05D019686 4.2e-16 90.9 89 52.8
Nn1g05663 Nelumbo nucifera HOM05D003819 ORTHO05D019686 1.1e-13 82.8 77 55.8
C04p03970 Brassica napus HOM05D003819 ORTHO05D032918 8.2e-12 76.6 60 61.7
Nn5g28220 Nelumbo nucifera HOM05D003819 ORTHO05D019686 8.2e-12 76.6 52 69.2
Psat7g136520 Pisum sativum HOM05D003819 ORTHO05D005291 1.4e-11 75.9 80 52.5
BcaC02g12428 Brassica carinata HOM05D003819 ORTHO05D032918 9.1e-11 73.2 68 52.9
Haze_02876 Corylus avellana HOM05D000448 ORTHO05D000291 9.1e-11 73.2 48 72.9
Psat1g205040 Pisum sativum HOM05D003819 ORTHO05D005291 1.2e-10 72.8 138 36.2
BolC4t22033H Brassica oleracea HOM05D003819 ORTHO05D032918 2.2e-09 68.6 60 55.0
Cc00_g06350 Coffea canephora HOM05D003819 ORTHO05D023588 3.8e-09 67.8 178 32.6
Aqoxy7G03215 Aquilegia oxysepala HOM05D003819 ORTHO05D005291 2.5e-08 65.1 56 55.4
CANSAT78G1359 Cannabis sativa HOM05D002762 ORTHO05D004643 5.2e-06 57.4 124 37.9
Nn4g26135 Nelumbo nucifera HOM05D002762 ORTHO05D004643 6.7e-06 57.0 138 34.8
THA.LOC104802549 Tarenaya hassleriana HOM05D002762 ORTHO05D004643 8.8e-06 56.6 122 36.9


User provided reference genes

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