Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv07688 Davidia involucrata HOM05D001356 ORTHO05D184346 5.1e-129 464.5 253 100.0
Dinv11215 Davidia involucrata HOM05D001356 ORTHO05D005768 5.6e-19 99.0 109 53.2
Dinv01682 Davidia involucrata HOM05D001356 ORTHO05D000012 4.4e-16 89.4 65 70.8
Dinv23197 Davidia involucrata HOM05D001356 ORTHO05D005768 4.4e-16 89.4 73 58.9
RcHm_v2.0_Chr7g0189111 Rosa chinensis HOM05D001356 ORTHO05D005768 1.7e-15 87.4 56 69.6
CiPaw.12G001800 Carya illinoinensis HOM05D001356 ORTHO05D005768 3.8e-15 86.3 52 71.2
PSO478G2570 Papaver somniferum HOM05D001356 ORTHO05D005768 4.9e-15 85.9 108 41.7
QL10p001085 Quercus lobata HOM05D001356 ORTHO05D005768 4.9e-15 85.9 52 69.2
Lj9A484T65 Lonicera japonica HOM05D001356 ORTHO05D005768 8.4e-15 85.1 52 69.2
TWI23G0437 Tripterygium wilfordii HOM05D001356 ORTHO05D005768 1.4e-14 84.3 52 69.2
DCAR_016359 Daucus carota HOM05D001356 ORTHO05D005768 2.4e-14 83.6 95 46.3
PSO017G0138 Papaver somniferum HOM05D001356 ORTHO05D005768 2.4e-14 83.6 108 40.7
Manes.06G124800 Manihot esculenta HOM05D001356 ORTHO05D005768 3.2e-14 83.2 95 46.3
Solyc03g097740.1 Solanum lycopersicum HOM05D001356 ORTHO05D005768 4.1e-14 82.8 52 71.2
Sopen03g028480 Solanum pennellii HOM05D001356 ORTHO05D005768 4.1e-14 82.8 52 71.2
TWI39G1035 Tripterygium wilfordii HOM05D001356 ORTHO05D005768 4.1e-14 82.8 52 67.3
CAN.G637.60 Capsicum annuum HOM05D001356 ORTHO05D005768 5.4e-14 82.4 52 69.2
Prupe.5G144800 Prunus persica HOM05D001356 ORTHO05D005768 5.4e-14 82.4 73 56.2
Actinidia36833 Actinidia chinensis HOM05D001356 ORTHO05D005768 9.2e-14 81.6 95 45.3
GSVIVG01008619001 Vitis vinifera HOM05D001356 ORTHO05D005768 1.2e-13 81.3 52 69.2
FvH4_5g09100 Fragaria vesca HOM05D001356 ORTHO05D005768 1.6e-13 80.9 52 71.2
FAN04G0867 Fragaria x ananassa HOM05D001356 ORTHO05D005768 1.6e-13 80.9 52 71.2
FAN13G1444 Fragaria x ananassa HOM05D001356 ORTHO05D005768 1.6e-13 80.9 52 71.2
FAN18G4028 Fragaria x ananassa HOM05D001356 ORTHO05D005768 1.6e-13 80.9 52 71.2
PGSC0003DMG400012021 Solanum tuberosum HOM05D001356 ORTHO05D005768 1.6e-13 80.9 52 69.2
MD14G1150000 Malus domestica HOM05D001356 ORTHO05D005768 2.1e-13 80.5 52 67.3
TAR371G0001 Trochodendron aralioides HOM05D001356 ORTHO05D005768 2.1e-13 80.5 51 72.5
Duzib084G0402 Durio zibethinus HOM05D001356 ORTHO05D005768 3.5e-13 79.7 54 64.8
TAR629G3251 Trochodendron aralioides HOM05D001356 ORTHO05D005768 3.5e-13 79.7 52 71.2
CSS0007451 Camellia sinensis var. sinensis HOM05D001356 ORTHO05D005768 4.6e-13 79.3 52 69.2
Actinidia08896 Actinidia chinensis HOM05D001356 ORTHO05D005768 6.0e-13 79.0 52 65.4
Cpa.g.sc4.117 Carica papaya HOM05D001356 ORTHO05D005768 6.0e-13 79.0 52 67.3
MD06G1133700 Malus domestica HOM05D001356 ORTHO05D005768 6.0e-13 79.0 52 65.4
Peaxi162Scf00171g00113 Petunia axillaris HOM05D001356 ORTHO05D005768 6.0e-13 79.0 52 67.3
Thecc.03G137400 Theobroma cacao HOM05D001356 ORTHO05D005768 6.0e-13 79.0 54 63.0
Atru.chr6.1892 Acer truncatum HOM05D001356 ORTHO05D005768 7.8e-13 78.6 56 58.9
Ciclev10031112m.g Citrus clementina HOM05D001356 ORTHO05D005768 1.0e-12 78.2 73 50.7
Dinv31369 Davidia involucrata HOM05D001959 ORTHO05D001955 1.0e-12 78.2 47 87.2
Haze_07122 Corylus avellana HOM05D001356 ORTHO05D005768 1.3e-12 77.8 52 65.4
Sabra15G0123200 Salix brachista HOM05D001356 ORTHO05D005768 1.3e-12 77.8 52 67.3
Eucgr.K02202 Eucalyptus grandis HOM05D001356 ORTHO05D005768 2.3e-12 77.0 52 67.3
Gohir.A07G047900 Gossypium hirsutum HOM05D001356 ORTHO05D005768 3.0e-12 76.6 89 42.7
Manes.14G046700 Manihot esculenta HOM05D001356 ORTHO05D005768 3.0e-12 76.6 52 67.3
Potri.012G104400 Populus trichocarpa HOM05D001356 ORTHO05D005768 3.0e-12 76.6 51 68.6
Cfa018730 Carpinus fangiana HOM05D001356 ORTHO05D005768 3.9e-12 76.3 52 63.5
Gohir.D07G052200 Gossypium hirsutum HOM05D001356 ORTHO05D005768 3.9e-12 76.3 52 61.5
Gorai.001G055200 Gossypium raimondii HOM05D001356 ORTHO05D005768 3.9e-12 76.3 52 61.5
Lj5C91T4 Lonicera japonica HOM05D001356 ORTHO05D005768 3.9e-12 76.3 73 49.3
COL.COLO4_16683 Corchorus olitorius HOM05D001356 ORTHO05D005768 5.1e-12 75.9 56 62.5
SHI14133 Sapria himalayana HOM05D001356 ORTHO05D005768 5.1e-12 75.9 52 63.5
Duzib205G0014 Durio zibethinus HOM05D001356 ORTHO05D005768 6.6e-12 75.5 68 51.5
FAN08G3029 Fragaria x ananassa HOM05D001356 ORTHO05D005768 6.6e-12 75.5 52 69.2
Potri.015G103700 Populus trichocarpa HOM05D001356 ORTHO05D005768 8.7e-12 75.1 52 65.4
Sabra12G0076800 Salix brachista HOM05D001356 ORTHO05D005768 1.1e-11 74.7 52 63.5
Aqoxy3G01748 Aquilegia oxysepala HOM05D001356 ORTHO05D005768 1.5e-11 74.3 50 68.0
Cc04_g09470 Coffea canephora HOM05D001356 ORTHO05D005768 1.5e-11 74.3 52 63.5
Lj1g0001437 Lotus japonicus HOM05D001356 ORTHO05D005768 1.5e-11 74.3 110 40.0
THA.LOC104808043 Tarenaya hassleriana HOM05D001356 ORTHO05D005768 1.5e-11 74.3 56 58.9
CARHR257360 Cardamine hirsuta HOM05D001356 ORTHO05D005768 1.9e-11 73.9 56 60.7
Sed0000393 Sechium edule HOM05D001356 ORTHO05D005768 1.9e-11 73.9 57 61.4
AL8G25090 Arabidopsis lyrata HOM05D001356 ORTHO05D005768 3.3e-11 73.2 56 60.7
Gohir.A09G247700 Gossypium hirsutum HOM05D001356 ORTHO05D005768 3.3e-11 73.2 56 58.9
Gohir.D09G248500 Gossypium hirsutum HOM05D001356 ORTHO05D005768 3.3e-11 73.2 56 58.9
Gorai.006G272800 Gossypium raimondii HOM05D001356 ORTHO05D005768 3.3e-11 73.2 56 58.9
Ah.11g046540 Amaranthus hybridus HOM05D001356 ORTHO05D005768 4.3e-11 72.8 52 61.5
Ah.02g114680 Amaranthus hybridus HOM05D001356 ORTHO05D005768 5.6e-11 72.4 109 37.6
AT5G50900 Arabidopsis thaliana HOM05D001356 ORTHO05D005768 5.6e-11 72.4 56 58.9
Lsat_1_v5_gn_1_32360 Lactuca sativa HOM05D001356 ORTHO05D005768 5.6e-11 72.4 52 65.4
MBI11_g14284_MAGBIO Magnolia biondii HOM05D001356 ORTHO05D005768 5.6e-11 72.4 74 50.0
Lsat_1_v5_gn_4_84081 Lactuca sativa HOM05D001356 ORTHO05D005768 7.3e-11 72.0 56 60.7
Nitab4.5_0001825g0010 Nicotiana tabacum HOM05D001356 ORTHO05D005768 7.3e-11 72.0 52 61.5
Nitab4.5_0001451g0010 Nicotiana tabacum HOM05D001356 ORTHO05D005768 9.6e-11 71.6 52 61.5
ECA232G2864 Erigeron canadensis HOM05D001356 ORTHO05D005768 1.2e-10 71.2 52 61.5
Sc04g0000320 Simmondsia chinensis HOM05D001356 ORTHO05D005768 1.2e-10 71.2 52 57.7
Sed0003645 Sechium edule HOM05D001356 ORTHO05D005768 1.6e-10 70.9 57 59.6
EL10Ac5g11336 Beta vulgaris HOM05D001356 ORTHO05D005768 2.1e-10 70.5 52 57.7
ClCG01G009870 Citrullus lanatus HOM05D001356 ORTHO05D005768 2.1e-10 70.5 57 56.1
Nn3g16332 Nelumbo nucifera HOM05D001356 ORTHO05D005768 2.1e-10 70.5 54 61.1
HanXRQChr09g0273601 Helianthus annuus HOM05D001356 ORTHO05D005768 2.8e-10 70.1 56 58.9
MELO3C021709.2 Cucumis melo HOM05D001356 ORTHO05D005768 3.6e-10 69.7 57 56.1
CsaV3_1G045910 Cucumis sativus L. HOM05D001356 ORTHO05D005768 3.6e-10 69.7 57 56.1
Migut.O00351 Erythranthe guttata HOM05D001356 ORTHO05D005768 3.6e-10 69.7 52 59.6
Sp6g13030 Schrenkiella parvula HOM05D001356 ORTHO05D005768 3.6e-10 69.7 56 57.1
Carub.0008s1090 Capsella rubella HOM05D001356 ORTHO05D005768 4.7e-10 69.3 56 57.1
Medtr3g098730 Medicago truncatula HOM05D001356 ORTHO05D005768 4.7e-10 69.3 57 54.4
SalBow5G4223 Salvia bowleyana HOM05D001356 ORTHO05D005768 4.7e-10 69.3 52 61.5
Aa31LG3G7400 Aethionema arabicum HOM05D001356 ORTHO05D005768 6.2e-10 68.9 56 57.1
Thhalv10013161m.g Eutrema salsugineum HOM05D001356 ORTHO05D005768 6.2e-10 68.9 56 55.4
C02p20640 Brassica napus HOM05D001356 ORTHO05D005768 8.1e-10 68.6 56 57.1
BolC2t08206H Brassica oleracea HOM05D001356 ORTHO05D005768 8.1e-10 68.6 56 57.1
Ca_16078_v3 Cicer arietinum L. HOM05D001356 ORTHO05D005768 8.1e-10 68.6 52 61.5
A02p12580 Brassica napus HOM05D001356 ORTHO05D005768 1.1e-09 68.2 56 57.1
Oeu058113.1 Olea europaea HOM05D001356 ORTHO05D005768 1.4e-09 67.8 52 57.7
MSTRG.4626 Avicennia marina HOM05D001356 ORTHO05D005768 1.8e-09 67.4 58 55.2
BcaC03g14631 Brassica carinata HOM05D001356 ORTHO05D005768 1.8e-09 67.4 56 58.9
BraA02t06316Z Brassica rapa HOM05D001356 ORTHO05D005768 1.8e-09 67.4 56 57.1
AUR62029532 Chenopodium quinoa HOM05D001356 ORTHO05D005768 2.4e-09 67.0 56 57.1
AUR62034787 Chenopodium quinoa HOM05D001356 ORTHO05D005768 2.4e-09 67.0 56 57.1
Dinv11816 Davidia involucrata HOM05D001959 ORTHO05D001955 2.4e-09 67.0 48 77.1
Hma1.2p1_0168F.1_g074170 Hydrangea macrophylla HOM05D001356 ORTHO05D005768 2.4e-09 67.0 111 39.6
Lalb_Chr23g0272951 Lupinus albus HOM05D001356 ORTHO05D005768 2.4e-09 67.0 63 55.6
MSTRG.11257 Avicennia marina HOM05D001356 ORTHO05D005768 3.1e-09 66.6 52 59.6
CDE05G1548 Ceratophyllum demersum HOM05D001356 ORTHO05D005768 3.1e-09 66.6 54 51.9
CDE05G2390 Ceratophyllum demersum HOM05D001356 ORTHO05D005768 3.1e-09 66.6 54 51.9
HanXRQChr02g0059861 Helianthus annuus HOM05D001356 ORTHO05D005768 3.1e-09 66.6 56 57.1
TPR.G21579 Trifolium pratense HOM05D001356 ORTHO05D005768 3.1e-09 66.6 57 54.4
Psat5g053840 Pisum sativum HOM05D001356 ORTHO05D005768 4.0e-09 66.2 57 52.6
BcaC05g25107 Brassica carinata HOM05D001356 ORTHO05D005768 6.9e-09 65.5 56 55.4
PGR044G0706 Punica granatum HOM05D001356 ORTHO05D005768 6.9e-09 65.5 67 46.3
SGA_v2.0_scaffold40G15596 Striga asiatica HOM05D001356 ORTHO05D005768 1.2e-08 64.7 52 59.6
BcaB05g24024 Brassica carinata HOM05D001356 ORTHO05D005768 2.6e-08 63.5 56 53.6
Cc09_g02530 Coffea canephora HOM05D001959 ORTHO05D001955 5.8e-08 62.4 86 45.3
Glyma.04G199500 Glycine max HOM05D001356 ORTHO05D005768 5.8e-08 62.4 53 54.7
Glyma.06G166000 Glycine max HOM05D001356 ORTHO05D005768 7.6e-08 62.0 53 54.7
ATR0582G114 Amborella trichopoda HOM05D001356 ORTHO05D005768 9.9e-08 61.6 62 45.2
A03p16520 Brassica napus HOM05D001356 ORTHO05D005768 1.7e-07 60.8 56 53.6
BolC3t14326H Brassica oleracea HOM05D001356 ORTHO05D005768 1.7e-07 60.8 56 53.6
BraA03t10939Z Brassica rapa HOM05D001356 ORTHO05D005768 1.7e-07 60.8 56 53.6
CSS0003168 Camellia sinensis var. sinensis HOM05D001959 ORTHO05D001955 1.7e-07 60.8 49 69.4
VMungo1309G3027 Vigna mungo HOM05D001356 ORTHO05D005768 1.7e-07 60.8 53 49.1
Phvul.009G163700 Phaseolus vulgaris HOM05D001356 ORTHO05D005768 6.4e-07 58.9 53 50.9
Actinidia27202 Actinidia chinensis HOM05D001959 ORTHO05D001955 8.4e-07 58.5 48 68.8
Actinidia38242 Actinidia chinensis HOM05D001959 ORTHO05D001955 8.4e-07 58.5 48 68.8
SEGI_14099 Sequoiadendron giganteum HOM05D001356 ORTHO05D003895 8.4e-07 58.5 71 43.7
Hma1.2p1_0786F.1_g217610 Hydrangea macrophylla HOM05D001959 ORTHO05D001955 1.1e-06 58.2 48 70.8
ECA247G0908 Erigeron canadensis HOM05D001356 ORTHO05D005768 1.4e-06 57.8 56 50.0
MSTRG.27448 Avicennia marina HOM05D001959 ORTHO05D001955 2.4e-06 57.0 45 68.9
Oeu017237.1 Olea europaea HOM05D001959 ORTHO05D001955 2.4e-06 57.0 48 66.7
unitig_27.g25086 Utricularia gibba HOM05D001356 ORTHO05D005768 4.2e-06 56.2 52 51.9
Migut.F02020 Erythranthe guttata HOM05D001959 ORTHO05D001955 5.4e-06 55.8 48 64.6
Hma1.2p1_0046F.1_g027600 Hydrangea macrophylla HOM05D001356 ORTHO05D005768 7.1e-06 55.5 53 54.7
unitig_744.g24640 Utricularia gibba HOM05D001356 ORTHO05D005768 7.1e-06 55.5 52 50.0


User provided reference genes

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