Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv07639 Davidia involucrata HOM05D006455 ORTHO05D008098 3.4e-211 738.0 360 100.0
CSS0002127 Camellia sinensis var. sinensis HOM05D006455 ORTHO05D008098 1.1e-116 424.1 393 56.5
Actinidia23129 Actinidia chinensis HOM05D006455 ORTHO05D008098 9.1e-116 421.0 319 65.2
Rhsim13G0055500 Rhododendron simsii HOM05D006455 ORTHO05D008098 2.5e-113 412.9 408 53.9
GSVIVG01001915001 Vitis vinifera HOM05D006455 ORTHO05D008098 3.6e-112 409.1 392 55.6
Lj1A106T21 Lonicera japonica HOM05D006455 ORTHO05D008098 1.8e-111 406.8 482 49.4
Cfa012584 Carpinus fangiana HOM05D006455 ORTHO05D008098 6.8e-111 404.8 393 55.0
Haze_08072 Corylus avellana HOM05D006455 ORTHO05D008098 2.2e-109 399.8 393 53.9
TAR362G0985 Trochodendron aralioides HOM05D006455 ORTHO05D008098 1.4e-108 397.1 392 54.1
Manes.12G057502 Manihot esculenta HOM05D006455 ORTHO05D008098 2.5e-105 386.3 396 51.8
Manes.12G057904 Manihot esculenta HOM05D006455 ORTHO05D008098 7.3e-105 384.8 396 51.5
Manes.12G057700 Manihot esculenta HOM05D006455 ORTHO05D008098 2.3e-103 379.8 396 51.5
Manes.12G057901 Manihot esculenta HOM05D006455 ORTHO05D008098 2.3e-103 379.8 396 51.5
QL12p000818 Quercus lobata HOM05D006455 ORTHO05D008098 3.1e-103 379.4 395 52.4
Thecc.01G205700 Theobroma cacao HOM05D006455 ORTHO05D008098 2.4e-100 369.8 393 50.6
CiPaw.12G071600 Carya illinoinensis HOM05D006455 ORTHO05D008098 4.1e-100 369.0 393 50.9
Migut.D00764 Erythranthe guttata HOM05D006455 ORTHO05D008098 7.0e-100 368.2 397 50.1
Cc04_g10320 Coffea canephora HOM05D006455 ORTHO05D008098 1.2e-99 367.5 396 49.7
Ciclev10014895m.g Citrus clementina HOM05D006455 ORTHO05D008098 3.5e-99 365.9 393 50.4
COL.COLO4_29922 Corchorus olitorius HOM05D006455 ORTHO05D008098 6.0e-99 365.2 379 50.7
Gohir.A11G144500 Gossypium hirsutum HOM05D006455 ORTHO05D008098 1.0e-98 364.4 393 48.6
MSTRG.18514 Avicennia marina HOM05D006455 ORTHO05D008098 1.3e-98 364.0 390 51.0
Gorai.007G161800 Gossypium raimondii HOM05D006455 ORTHO05D008098 8.6e-98 361.3 379 49.1
SGA_v2.0_scaffold158G37512 Striga asiatica HOM05D006455 ORTHO05D008098 1.9e-97 360.1 411 47.2
ClCG10G001240 Citrullus lanatus HOM05D006455 ORTHO05D008098 2.1e-96 356.7 394 49.0
CsaV3_3G001300 Cucumis sativus L. HOM05D006455 ORTHO05D008098 2.1e-96 356.7 394 49.0
MELO3C013818.2 Cucumis melo HOM05D006455 ORTHO05D008098 1.4e-95 354.0 394 48.7
Nn1g09557 Nelumbo nucifera HOM05D006455 ORTHO05D008098 1.2e-94 350.9 392 48.2
FAN08G0013 Fragaria x ananassa HOM05D006455 ORTHO05D004776 5.8e-94 348.6 397 49.4
Prupe.2G049600 Prunus persica HOM05D006455 ORTHO05D008098 5.8e-94 348.6 393 48.3
MD02G1270700 Malus domestica HOM05D006455 ORTHO05D008098 1.7e-93 347.1 393 47.8
Atru.chr6.3495 Acer truncatum HOM05D006455 ORTHO05D008098 2.2e-93 346.7 397 49.1
TWI75G0274 Tripterygium wilfordii HOM05D006455 ORTHO05D008098 3.7e-93 345.9 390 47.2
FvH4_5g32260 Fragaria vesca HOM05D006455 ORTHO05D008098 8.3e-93 344.7 397 48.6
Sed0000077 Sechium edule HOM05D006455 ORTHO05D008098 1.1e-92 344.4 397 47.6
FAN18G4165 Fragaria x ananassa HOM05D006455 ORTHO05D008098 1.4e-92 344.0 397 48.6
RcHm_v2.0_Chr7g0228451 Rosa chinensis HOM05D006455 ORTHO05D008098 1.9e-92 343.6 397 48.6
Peaxi162Scf00315g00814 Petunia axillaris HOM05D006455 ORTHO05D008098 4.1e-92 342.4 393 47.1
Cpa.g.sc8.27 Carica papaya HOM05D006455 ORTHO05D008098 7.1e-92 341.7 396 47.0
FAN13G0315 Fragaria x ananassa HOM05D006455 ORTHO05D008098 7.1e-92 341.7 397 48.6
Nitab4.5_0006514g0010 Nicotiana tabacum HOM05D006455 ORTHO05D008098 7.1e-92 341.7 393 47.3
ECA248G0009 Erigeron canadensis HOM05D006455 ORTHO05D008098 1.2e-91 340.9 392 46.2
Solyc09g020150.4 Solanum lycopersicum HOM05D006455 ORTHO05D008098 1.2e-91 340.9 390 47.2
Ah.11g050710 Amaranthus hybridus HOM05D006455 ORTHO05D008098 1.6e-91 340.5 334 50.9
Nitab4.5_0000077g0170 Nicotiana tabacum HOM05D006455 ORTHO05D008098 1.6e-91 340.5 393 47.3
Potri.014G174300 Populus trichocarpa HOM05D006455 ORTHO05D008098 2.7e-91 339.7 391 47.6
Sc05g0001610 Simmondsia chinensis HOM05D006455 ORTHO05D008098 4.6e-91 339.0 381 47.8
Sopen09g013040 Solanum pennellii HOM05D006455 ORTHO05D008098 4.6e-91 339.0 390 46.9
Eucgr.K02350 Eucalyptus grandis HOM05D006455 ORTHO05D008098 1.5e-89 334.0 384 46.6
PGR044G2428 Punica granatum HOM05D006455 ORTHO05D008098 2.5e-89 333.2 392 45.9
CANSAT21G2240 Cannabis sativa HOM05D006455 ORTHO05D008098 2.3e-87 326.6 389 47.6
HanXRQChr01g0013871 Helianthus annuus HOM05D006455 ORTHO05D008098 2.3e-87 326.6 390 45.6
HanXRQChr01g0014041 Helianthus annuus HOM05D006455 ORTHO05D008098 2.3e-87 326.6 390 45.9
Lsat_1_v5_gn_5_176300 Lactuca sativa HOM05D006455 ORTHO05D008098 2.3e-87 326.6 372 48.1
Hund02815 Selenicereus undatus HOM05D006455 ORTHO05D008098 5.2e-87 325.5 384 45.3
vmacro02844 Vaccinium macrocarpon HOM05D006455 ORTHO05D008098 2.0e-86 323.6 372 49.5
Lalb_Chr16g0391751 Lupinus albus HOM05D006455 ORTHO05D008098 3.4e-86 322.8 388 44.8
arahy.Tifrunner.gnm1.ann1.E0JCGG Arachis hypogaea HOM05D006455 ORTHO05D008098 6.4e-85 318.5 397 44.6
arahy.Tifrunner.gnm1.ann1.U8H9H1 Arachis hypogaea HOM05D006455 ORTHO05D008098 3.2e-84 316.2 397 44.6
Aqoxy2G04132 Aquilegia oxysepala HOM05D006455 ORTHO05D008098 5.4e-84 315.5 387 46.0
Sabra14G0133600 Salix brachista HOM05D006455 ORTHO05D008098 1.6e-83 313.9 393 44.8
Sp2g18700 Schrenkiella parvula HOM05D006455 ORTHO05D008098 6.0e-83 312.0 392 42.6
Manes.12G057900 Manihot esculenta HOM05D006455 ORTHO05D008098 1.3e-82 310.8 390 44.9
AL8G21110 Arabidopsis lyrata HOM05D006455 ORTHO05D008098 6.6e-82 308.5 384 43.8
AUR62008053 Chenopodium quinoa HOM05D006455 ORTHO05D008098 1.9e-81 307.0 403 44.4
AUR62028628 Chenopodium quinoa HOM05D006455 ORTHO05D008098 3.3e-81 306.2 391 43.5
Glyma.16G105200 Glycine max HOM05D006455 ORTHO05D008098 3.3e-81 306.2 383 44.6
Carub.0008s0792 Capsella rubella HOM05D006455 ORTHO05D008098 9.6e-81 304.7 393 42.2
Lj4g0021895 Lotus japonicus HOM05D006455 ORTHO05D008098 1.2e-80 304.3 395 44.1
CARHR183890 Cardamine hirsuta HOM05D006455 ORTHO05D008098 4.7e-80 302.4 384 42.4
BraA06t26837Z Brassica rapa HOM05D006455 ORTHO05D008098 8.1e-80 301.6 394 41.6
Manes.12G058105 Manihot esculenta HOM05D006455 ORTHO05D008098 8.1e-80 301.6 390 44.6
BcaC06g30805 Brassica carinata HOM05D006455 ORTHO05D008098 2.4e-79 300.1 394 41.9
A06p39230 Brassica napus HOM05D006455 ORTHO05D008098 2.4e-79 300.1 393 41.5
Thhalv10003907m.g Eutrema salsugineum HOM05D006455 ORTHO05D008098 3.1e-79 299.7 390 42.3
AT5G48340 Arabidopsis thaliana HOM05D006455 ORTHO05D008098 4.0e-79 299.3 393 41.7
BolC7t44431H Brassica oleracea HOM05D006455 ORTHO05D008098 5.2e-79 298.9 395 41.3
PSO210G0904 Papaver somniferum HOM05D006455 ORTHO05D008098 5.2e-79 298.9 386 43.3
unitig_0.g222 Utricularia gibba HOM05D006455 ORTHO05D008098 5.2e-79 298.9 379 44.3
PSO210G7796 Papaver somniferum HOM05D006455 ORTHO05D008098 8.9e-79 298.1 386 43.0
Phvul.003G279900 Phaseolus vulgaris HOM05D006455 ORTHO05D008098 1.5e-78 297.4 389 43.4
Ca_22482_v3 Cicer arietinum L. HOM05D006455 ORTHO05D008098 3.4e-78 296.2 391 41.9
Ca_30349_v3 Cicer arietinum L. HOM05D006455 ORTHO05D008098 3.4e-78 296.2 391 41.9
C07p39110 Brassica napus HOM05D006455 ORTHO05D008098 7.6e-78 295.0 394 41.4
Aa31LG5G9090 Aethionema arabicum HOM05D006455 ORTHO05D008098 9.9e-78 294.7 379 42.0
BcaC06g30808 Brassica carinata HOM05D006455 ORTHO05D008098 2.9e-77 293.1 394 41.1
TPR.G31161 Trifolium pratense HOM05D006455 ORTHO05D008098 4.9e-77 292.4 372 42.7
VMungo0251G3325 Vigna mungo HOM05D006455 ORTHO05D008098 7.1e-76 288.5 374 43.6
Psat4g108080 Pisum sativum HOM05D006455 ORTHO05D008098 9.3e-76 288.1 377 43.0
ATR0743G062 Amborella trichopoda HOM05D006455 ORTHO05D008098 3.5e-75 286.2 389 42.7
SHI10210 Sapria himalayana HOM05D006455 ORTHO05D008098 3.5e-75 286.2 396 41.4
Medtr8g071270 Medicago truncatula HOM05D006455 ORTHO05D008098 3.3e-73 279.6 389 40.6
DCAR_000439 Daucus carota HOM05D006455 ORTHO05D008098 1.4e-71 274.2 224 62.1
MBI07_g34151_MAGBIO Magnolia biondii HOM05D006455 ORTHO05D008098 3.8e-69 266.2 391 41.2
Gohir.D11G150900 Gossypium hirsutum HOM05D006455 ORTHO05D008098 2.1e-67 260.4 310 46.1
Zm00001eb144730 Zea mays HOM05D006455 ORTHO05D008098 5.1e-66 255.8 387 38.5
Os01g0897100 Oryza sativa ssp. japonica HOM05D006455 ORTHO05D008098 1.8e-63 247.3 178 65.2
HPP92_001271 Vanilla planifolia HOM05D006455 ORTHO05D008098 1.7e-61 240.7 207 57.5
EL10Ac5g10573 Beta vulgaris HOM05D006455 ORTHO05D008098 1.1e-60 238.0 316 43.7
HPP92_001254 Vanilla planifolia HOM05D006455 ORTHO05D008098 9.3e-60 235.0 175 64.0
SEGI_16096 Sequoiadendron giganteum HOM05D006455 ORTHO05D008098 3.3e-57 226.5 378 36.2
CDE05G1197 Ceratophyllum demersum HOM05D006455 ORTHO05D008098 3.8e-53 213.0 138 68.8
Manes.12G058904 Manihot esculenta HOM05D006455 ORTHO05D008098 3.2e-52 209.9 270 44.4
Manes.12G057503 Manihot esculenta HOM05D006455 ORTHO05D008098 4.5e-46 189.5 102 82.4
Manes.12G057505 Manihot esculenta HOM05D006455 ORTHO05D008098 4.5e-46 189.5 102 82.4
Oeu030353.1 Olea europaea HOM05D006455 ORTHO05D008098 2.2e-40 170.6 266 41.0
Mapoly0109s0061 Marchantia polymorpha HOM05D006455 ORTHO05D008098 2.4e-39 167.2 184 44.6
SMO200G0077 Selaginella moellendorffii HOM05D006455 ORTHO05D008098 3.1e-39 166.8 189 45.0
Pp3c10_13370 Physcomitrium patens HOM05D006455 ORTHO05D008098 1.2e-38 164.9 178 47.2
PGSC0003DMG402020303 Solanum tuberosum HOM05D006455 ORTHO05D008098 2.2e-32 144.1 263 33.8
CBR_g48756 Chara braunii HOM05D006455 ORTHO05D000497 6.9e-31 139.0 131 48.9
Manes.12G057504 Manihot esculenta HOM05D006455 ORTHO05D008098 1.2e-30 138.3 115 60.9
Manes.12G060108 Manihot esculenta HOM05D006455 ORTHO05D008098 1.2e-30 138.3 115 60.9
AagrBONN_evm.TU.Sc2ySwM_228.5553 Anthoceros agrestis HOM05D006455 ORTHO05D008098 7.7e-30 135.6 180 42.2
Oeu030354.1 Olea europaea HOM05D006455 ORTHO05D008098 1.4e-26 124.8 78 76.9
Zm00001eb128100 Zea mays HOM05D006455 ORTHO05D008098 4.1e-23 113.2 103 53.4
Zm00001eb274660 Zea mays HOM05D006455 ORTHO05D008098 3.5e-22 110.2 103 52.4
PGSC0003DMG400020304 Solanum tuberosum HOM05D006455 ORTHO05D008098 4.7e-19 99.8 74 62.2
EL10Ac5g10574 Beta vulgaris HOM05D006455 ORTHO05D008098 6.3e-16 89.4 78 56.4
Cre03.g197250 Chlamydomonas reinhardtii HOM05D006455 ORTHO05D008098 1.6e-14 84.7 115 38.3
Phvul.003G297266 Phaseolus vulgaris HOM05D006455 ORTHO05D008098 5.9e-14 82.8 83 47.0
Oeu003682.1 Olea europaea HOM05D006455 ORTHO05D008098 2.2e-13 80.9 78 53.8


User provided reference genes

Program Settings