Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv07500 Davidia involucrata HOM05D006667 ORTHO05D008387 5.5e-149 531.6 414 100.0
Actinidia04346 Actinidia chinensis HOM05D006667 ORTHO05D008387 3.0e-126 456.1 402 87.1
Rhsim12G0089400 Rhododendron simsii HOM05D006667 ORTHO05D008387 1.1e-120 437.6 404 84.7
Prupe.1G349400 Prunus persica HOM05D006667 ORTHO05D008387 3.6e-116 422.5 404 83.9
CSS0023228 Camellia sinensis var. sinensis HOM05D006667 ORTHO05D008387 1.1e-115 421.0 404 87.6
QL03p045401 Quercus lobata HOM05D006667 ORTHO05D008387 7.5e-114 414.8 406 85.2
TAR622G0133 Trochodendron aralioides HOM05D006667 ORTHO05D008387 1.4e-112 410.6 405 83.0
FvH4_4g37160 Fragaria vesca HOM05D006667 ORTHO05D008387 1.6e-111 407.1 404 83.2
FAN12G3199 Fragaria x ananassa HOM05D006667 ORTHO05D008387 3.5e-111 406.0 404 82.9
RcHm_v2.0_Chr4g0446961 Rosa chinensis HOM05D006667 ORTHO05D008387 1.7e-110 403.7 405 83.0
THA.LOC104819372 Tarenaya hassleriana HOM05D006667 ORTHO05D008387 1.1e-109 401.0 404 86.1
Sabra05G0073100 Salix brachista HOM05D006667 ORTHO05D008387 7.3e-109 398.3 398 81.7
Lj6A708T61 Lonicera japonica HOM05D006667 ORTHO05D008387 1.2e-108 397.5 406 82.5
Lj6A713T75 Lonicera japonica HOM05D006667 ORTHO05D008387 1.2e-108 397.5 406 82.5
Hund24389 Selenicereus undatus HOM05D006667 ORTHO05D008387 3.6e-108 396.0 408 83.8
PGSC0003DMG400011513 Solanum tuberosum HOM05D006667 ORTHO05D008387 3.6e-108 396.0 409 79.7
Peaxi162Scf00681g00319 Petunia axillaris HOM05D006667 ORTHO05D008387 1.1e-107 394.4 408 82.4
Hma1.2p1_0044F.1_g026320 Hydrangea macrophylla HOM05D006667 ORTHO05D008387 2.3e-107 393.3 403 84.6
Medtr1g114610 Medicago truncatula HOM05D006667 ORTHO05D008387 2.3e-107 393.3 410 80.7
VMungo0720G1985 Vigna mungo HOM05D006667 ORTHO05D008387 1.7e-105 387.1 406 78.1
Potri.005G088800 Populus trichocarpa HOM05D006667 ORTHO05D008387 6.4e-105 385.2 404 80.2
Nitab4.5_0004979g0060 Nicotiana tabacum HOM05D006667 ORTHO05D008387 8.4e-105 384.8 412 82.3
Migut.L00803 Erythranthe guttata HOM05D006667 ORTHO05D008387 3.2e-104 382.9 401 83.0
Solyc04g008980.3 Solanum lycopersicum HOM05D006667 ORTHO05D008387 3.2e-104 382.9 409 81.9
Aqoxy3G04313 Aquilegia oxysepala HOM05D006667 ORTHO05D008387 7.1e-104 381.7 404 75.5
Sabra07G0063900 Salix brachista HOM05D006667 ORTHO05D008387 9.2e-104 381.3 465 64.7
Thhalv10004329m.g Eutrema salsugineum HOM05D006667 ORTHO05D008387 1.6e-103 380.6 406 83.5
Sopen04g004160 Solanum pennellii HOM05D006667 ORTHO05D008387 2.1e-103 380.2 409 81.7
AL6G34600 Arabidopsis lyrata HOM05D006667 ORTHO05D008387 2.7e-103 379.8 404 83.4
EL10Ac9g22983 Beta vulgaris HOM05D006667 ORTHO05D008387 3.5e-103 379.4 405 83.0
A02p41020 Brassica napus HOM05D006667 ORTHO05D008387 3.5e-103 379.4 405 80.7
DCAR_002607 Daucus carota HOM05D006667 ORTHO05D008387 6.0e-103 378.6 405 77.8
Thecc.02G154400 Theobroma cacao HOM05D006667 ORTHO05D008387 7.8e-103 378.3 404 83.9
Gorai.008G147100 Gossypium raimondii HOM05D006667 ORTHO05D008387 3.0e-102 376.3 404 83.4
Lj5g0023243 Lotus japonicus HOM05D006667 ORTHO05D008387 5.1e-102 375.6 404 79.0
CiPaw.05G172300 Carya illinoinensis HOM05D006667 ORTHO05D008387 6.6e-102 375.2 402 82.3
BraA06t26360Z Brassica rapa HOM05D006667 ORTHO05D008387 8.6e-102 374.8 406 83.0
BcaC03g18029 Brassica carinata HOM05D006667 ORTHO05D008387 1.1e-101 374.4 407 78.6
BraA02t09050Z Brassica rapa HOM05D006667 ORTHO05D008387 1.1e-101 374.4 405 80.5
C02p60910 Brassica napus HOM05D006667 ORTHO05D008387 1.5e-101 374.0 405 79.0
Psat6g234200 Pisum sativum HOM05D006667 ORTHO05D008387 1.9e-101 373.6 402 77.9
Cpa.g.sc60.94 Carica papaya HOM05D006667 ORTHO05D008387 2.5e-101 373.2 407 81.6
arahy.Tifrunner.gnm1.ann1.IH6UK4 Arachis hypogaea HOM05D006667 ORTHO05D008387 3.3e-101 372.9 406 78.8
Gohir.D12G135900 Gossypium hirsutum HOM05D006667 ORTHO05D008387 3.3e-101 372.9 404 82.9
MBI06_g27487_MAGBIO Magnolia biondii HOM05D006667 ORTHO05D008387 3.3e-101 372.9 396 82.1
Nitab4.5_0005997g0030 Nicotiana tabacum HOM05D006667 ORTHO05D008387 5.6e-101 372.1 412 80.6
Sed0011343 Sechium edule HOM05D006667 ORTHO05D008387 2.8e-100 369.8 404 81.2
CsaV3_5G029020 Cucumis sativus L. HOM05D006667 ORTHO05D008387 6.2e-100 368.6 404 77.2
MELO3C011757.2 Cucumis melo HOM05D006667 ORTHO05D008387 8.1e-100 368.2 404 77.5
Manes.04G162700 Manihot esculenta HOM05D006667 ORTHO05D008387 1.4e-99 367.5 402 83.8
Sed0022119 Sechium edule HOM05D006667 ORTHO05D008387 3.1e-99 366.3 406 80.3
ClCG02G014160 Citrullus lanatus HOM05D006667 ORTHO05D008387 5.2e-99 365.5 404 80.0
CAN.G274.16 Capsicum annuum HOM05D006667 ORTHO05D008387 5.8e-98 362.1 400 81.2
Lalb_Chr02g0143651 Lupinus albus HOM05D006667 ORTHO05D008387 2.2e-97 360.1 403 76.9
Glyma.20G102500 Glycine max HOM05D006667 ORTHO05D008387 6.4e-97 358.6 404 81.2
Sc10g0006700 Simmondsia chinensis HOM05D006667 ORTHO05D008387 8.4e-97 358.2 401 76.8
arahy.Tifrunner.gnm1.ann1.F8B6JQ Arachis hypogaea HOM05D006667 ORTHO05D008387 4.2e-96 355.9 392 79.1
Aa31LG11G2790 Aethionema arabicum HOM05D006667 ORTHO05D008387 7.1e-96 355.1 404 77.2
SalBow2G2931 Salvia bowleyana HOM05D006667 ORTHO05D008387 2.1e-95 353.6 400 78.2
TWI74G1436 Tripterygium wilfordii HOM05D006667 ORTHO05D008387 4.6e-95 352.4 404 79.7
C07p44230 Brassica napus HOM05D006667 ORTHO05D008387 6.0e-95 352.1 406 77.3
CANSAT78G2402 Cannabis sativa HOM05D006667 ORTHO05D008387 1.0e-94 351.3 404 77.2
CARHR190200 Cardamine hirsuta HOM05D006667 ORTHO05D008387 1.7e-94 350.5 404 77.2
AT5G23340 Arabidopsis thaliana HOM05D006667 ORTHO05D008387 3.0e-94 349.7 404 80.2
BolC7t44948H Brassica oleracea HOM05D006667 ORTHO05D008387 3.0e-94 349.7 406 80.3
TPR.G4129 Trifolium pratense HOM05D006667 ORTHO05D008387 8.7e-94 348.2 410 76.3
Carub.0006s2112 Capsella rubella HOM05D006667 ORTHO05D008387 1.1e-93 347.8 404 80.0
A06p34280 Brassica napus HOM05D006667 ORTHO05D008387 3.3e-93 346.3 406 80.0
Glyma.10G286600 Glycine max HOM05D006667 ORTHO05D008387 4.3e-93 345.9 405 76.5
Hma1.2p1_0044F.1_g026310 Hydrangea macrophylla HOM05D006667 ORTHO05D008387 9.6e-93 344.7 433 61.9
BcaB07g29860 Brassica carinata HOM05D006667 ORTHO05D008387 6.2e-92 342.0 405 80.0
Ciclev10033734m.g Citrus clementina HOM05D006667 ORTHO05D008387 1.8e-91 340.5 403 72.7
Cfa008778 Carpinus fangiana HOM05D006667 ORTHO05D008387 2.4e-91 340.1 413 72.4
AUR62032948 Chenopodium quinoa HOM05D006667 ORTHO05D008387 1.5e-90 337.4 408 75.0
vmacro15997 Vaccinium macrocarpon HOM05D006667 ORTHO05D008387 1.5e-90 337.4 536 56.2
PGR142G2507 Punica granatum HOM05D006667 ORTHO05D008387 3.8e-89 332.8 401 77.6
Atru.chr11.1242 Acer truncatum HOM05D006667 ORTHO05D008387 3.2e-88 329.7 404 75.2
Sp2g23820 Schrenkiella parvula HOM05D006667 ORTHO05D008387 7.1e-88 328.6 406 74.6
MSTRG.8092 Avicennia marina HOM05D006667 ORTHO05D008387 3.5e-87 326.2 402 76.1
unitig_749.g13342 Utricularia gibba HOM05D006667 ORTHO05D008387 3.3e-85 319.7 400 71.2
Ca_11261_v3 Cicer arietinum L. HOM05D006667 ORTHO05D008387 5.3e-83 312.4 404 73.5
ECA246G5028 Erigeron canadensis HOM05D002605 ORTHO05D002842 1.2e-79 301.2 398 77.4
Ah.03g147880 Amaranthus hybridus HOM05D006667 ORTHO05D008387 1.6e-79 300.8 418 62.9
COL.COLO4_33111 Corchorus olitorius HOM05D006667 ORTHO05D008387 6.7e-78 295.4 404 75.2
Zm00001eb185570 Zea mays HOM05D006667 ORTHO05D008387 3.7e-76 289.7 398 64.3
HanXRQChr17g0541041 Helianthus annuus HOM05D006667 ORTHO05D008387 4.8e-76 289.3 410 74.6
Lsat_1_v5_gn_3_34481 Lactuca sativa HOM05D006667 ORTHO05D008387 1.4e-75 287.7 400 76.2
SGA_v2.0_scaffold80G25957 Striga asiatica HOM05D006667 ORTHO05D008387 1.4e-75 287.7 405 71.6
CDE04G2906 Ceratophyllum demersum HOM05D006667 ORTHO05D008387 5.8e-74 282.3 396 73.2
Eucgr.G02589 Eucalyptus grandis HOM05D006667 ORTHO05D008387 5.8e-74 282.3 404 72.0
PSO017G3027 Papaver somniferum HOM05D006667 ORTHO05D008387 3.5e-71 273.1 409 70.9
TWI53G1716 Tripterygium wilfordii HOM05D006667 ORTHO05D008387 2.3e-70 270.4 404 73.0
Oeu027930.1 Olea europaea HOM05D006667 ORTHO05D008387 1.9e-69 267.3 401 72.1
Haze_11790 Corylus avellana HOM05D006667 ORTHO05D008387 9.6e-69 265.0 408 65.9
AUR62017733 Chenopodium quinoa HOM05D006667 ORTHO05D008387 1.9e-64 250.8 422 58.5
Gohir.A12G132300 Gossypium hirsutum HOM05D006667 ORTHO05D008387 2.6e-58 230.3 185 71.9
HanXRQChr06g0171711 Helianthus annuus HOM05D006667 ORTHO05D008387 3.4e-58 229.9 392 69.6
Nn3g18579 Nelumbo nucifera HOM05D006667 ORTHO05D008387 2.1e-55 220.7 407 67.3
Phvul.007G014200 Phaseolus vulgaris HOM05D006667 ORTHO05D008387 4.8e-52 209.5 185 65.4
Os02g0636400 Oryza sativa ssp. japonica HOM05D006667 ORTHO05D008387 1.1e-51 208.4 180 61.7
PSO170G5099 Papaver somniferum HOM05D006667 ORTHO05D008387 2.9e-49 200.3 403 65.3
SEGI_01489 Sequoiadendron giganteum HOM05D006667 ORTHO05D008387 4.7e-47 193.0 399 61.9
Dinv17648 Davidia involucrata HOM05D006667 ORTHO05D008387 5.2e-46 189.5 154 68.8
Ca_11262_v3 Cicer arietinum L. HOM05D006667 ORTHO05D008387 6.3e-44 182.6 183 54.1
ATR0618G066 Amborella trichopoda HOM05D006667 ORTHO05D008387 1.7e-41 174.5 401 61.3
arahy.Tifrunner.gnm1.ann1.6XP1A8 Arachis hypogaea HOM05D006667 ORTHO05D008387 2.2e-41 174.1 108 76.9
arahy.Tifrunner.gnm1.ann1.RI7T4X Arachis hypogaea HOM05D006667 ORTHO05D008387 2.2e-41 174.1 108 76.9
Potri.007G075600 Populus trichocarpa HOM05D006667 ORTHO05D008387 3.8e-41 173.3 393 46.8
arahy.Tifrunner.gnm1.ann1.ALJ85P Arachis hypogaea HOM05D006667 ORTHO05D008387 1.8e-35 154.5 96 79.2
HPP92_025485 Vanilla planifolia HOM05D006667 ORTHO05D008387 2.9e-33 147.1 106 67.0
arahy.Tifrunner.gnm1.ann1.L6WSTP Arachis hypogaea HOM05D006667 ORTHO05D008387 4.2e-32 143.3 92 77.2
SMO116G0353 Selaginella moellendorffii HOM05D006667 ORTHO05D008387 1.2e-29 135.2 389 58.6
Medtr7g010500 Medicago truncatula HOM05D006667 ORTHO05D008387 8.3e-20 102.4 76 64.5
BcaC04g21805 Brassica carinata HOM05D006667 ORTHO05D008387 2.3e-14 84.3 82 68.3
C06p28130 Brassica napus HOM05D006667 ORTHO05D008387 2.6e-13 80.9 114 57.0
BolC6t37979H Brassica oleracea HOM05D006667 ORTHO05D008387 3.7e-12 77.0 114 56.1
C09p27300 Brassica napus HOM05D006667 ORTHO05D008387 1.2e-10 72.0 119 52.9
BolC6t38487H Brassica oleracea HOM05D006667 ORTHO05D008387 1.7e-09 68.2 114 53.5
Nitab4.5_0003794g0040 Nicotiana tabacum HOM05D002813 ORTHO05D003203 1.9e-08 64.7 140 32.1
QL12p041348 Quercus lobata HOM05D002813 ORTHO05D003203 2.5e-08 64.3 142 32.4
ECA236G1847 Erigeron canadensis HOM05D005998 ORTHO05D007664 5.6e-08 63.2 141 32.6
PGSC0003DMG400002228 Solanum tuberosum HOM05D002813 ORTHO05D003203 5.6e-08 63.2 140 32.1
Aa31LG1G15450 Aethionema arabicum HOM05D001818 ORTHO05D001780 2.1e-07 61.2 178 24.2
MBI04_g25313_MAGBIO Magnolia biondii HOM05D001818 ORTHO05D001780 3.6e-07 60.5 163 28.2
QL12p041353 Quercus lobata HOM05D002813 ORTHO05D003203 3.6e-07 60.5 142 31.7
Sopen08g020490 Solanum pennellii HOM05D002813 ORTHO05D003203 4.7e-07 60.1 140 31.4
PRCOL_00005880 Prasinoderma coloniale HOM05D007176 ORTHO05D009050 6.2e-07 59.7 102 30.4
unitig_899.g15441 Utricularia gibba HOM05D001818 ORTHO05D001780 6.2e-07 59.7 181 22.7
Glyma.14G200300 Glycine max HOM05D002125 ORTHO05D002105 8.0e-07 59.3 194 27.3
BcaC06g33410 Brassica carinata HOM05D002762 ORTHO05D004643 1.1e-06 58.9 151 30.5
A03p49130 Brassica napus HOM05D002762 ORTHO05D004643 1.1e-06 58.9 151 30.5
C07p47170 Brassica napus HOM05D002762 ORTHO05D004643 1.1e-06 58.9 151 30.5
BolC7t45238H Brassica oleracea HOM05D002762 ORTHO05D004643 1.1e-06 58.9 151 30.5
BraA03t14008Z Brassica rapa HOM05D002762 ORTHO05D004643 1.1e-06 58.9 151 30.5
CAN.G400.3 Capsicum annuum HOM05D002813 ORTHO05D003203 1.1e-06 58.9 140 32.9
VMungo0647G0746 Vigna mungo HOM05D002125 ORTHO05D002105 1.1e-06 58.9 195 28.2
BcaC06g32936 Brassica carinata HOM05D002762 ORTHO05D004643 1.8e-06 58.2 151 30.5
Potri.006G238300 Populus trichocarpa HOM05D002813 ORTHO05D003203 1.8e-06 58.2 137 32.8
Haze_04113 Corylus avellana HOM05D002125 ORTHO05D002105 2.3e-06 57.8 103 32.0
Manes.03G053200 Manihot esculenta HOM05D003317 ORTHO05D003696 3.1e-06 57.4 198 24.7
Pp3c10_8230 Physcomitrium patens HOM05D006667 ORTHO05D008387 3.1e-06 57.4 58 51.7
Rhsim06G0127300 Rhododendron simsii HOM05D001219 ORTHO05D001017 3.1e-06 57.4 169 24.9
Eucgr.C02935 Eucalyptus grandis HOM05D002813 ORTHO05D003203 4.0e-06 57.0 136 27.9
MBI19_g11829_MAGBIO Magnolia biondii HOM05D003317 ORTHO05D003696 4.0e-06 57.0 210 23.8
vmacro11170 Vaccinium macrocarpon HOM05D001818 ORTHO05D001780 4.0e-06 57.0 99 33.3
Nitab4.5_0002594g0070 Nicotiana tabacum HOM05D002762 ORTHO05D004643 6.8e-06 56.2 120 29.2
Nitab4.5_0028416g0010 Nicotiana tabacum HOM05D002813 ORTHO05D003203 8.9e-06 55.8 140 30.0


User provided reference genes

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