Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv07399 Davidia involucrata HOM05D005487 ORTHO05D007280 6.6e-259 896.7 418 100.0
CSS0007892 Camellia sinensis var. sinensis HOM05D005487 ORTHO05D007280 1.3e-217 759.6 400 87.2
Nn1g07355 Nelumbo nucifera HOM05D005487 ORTHO05D007280 2.1e-217 758.8 400 87.2
Hma1.2p1_0135F.1_g061730 Hydrangea macrophylla HOM05D005487 ORTHO05D007280 4.1e-216 754.6 400 88.2
TAR724G0004 Trochodendron aralioides HOM05D005487 ORTHO05D007280 1.7e-214 749.2 400 86.2
Oeu044422.1 Olea europaea HOM05D005487 ORTHO05D007280 6.5e-214 747.3 400 85.0
Manes.09G070300 Manihot esculenta HOM05D005487 ORTHO05D007280 8.5e-214 746.9 400 86.8
QL05p069756 Quercus lobata HOM05D005487 ORTHO05D007280 1.9e-213 745.7 401 86.3
TAR629G3393 Trochodendron aralioides HOM05D005487 ORTHO05D007280 1.2e-212 743.0 400 84.5
CiPaw.10G077700 Carya illinoinensis HOM05D005487 ORTHO05D007280 7.9e-212 740.3 400 85.2
Lj2C262G3 Lonicera japonica HOM05D005487 ORTHO05D007280 7.9e-212 740.3 400 86.2
Cfa000109 Carpinus fangiana HOM05D005487 ORTHO05D007280 1.3e-211 739.6 400 85.2
Nn1g03329 Nelumbo nucifera HOM05D005487 ORTHO05D007280 3.9e-211 738.0 400 85.2
Actinidia26862 Actinidia chinensis HOM05D005487 ORTHO05D007280 5.1e-211 737.6 400 84.5
Actinidia11881 Actinidia chinensis HOM05D005487 ORTHO05D007280 2.5e-210 735.3 400 85.5
vmacro03645 Vaccinium macrocarpon HOM05D005487 ORTHO05D007280 2.5e-210 735.3 401 85.0
Nitab4.5_0000143g0260 Nicotiana tabacum HOM05D005487 ORTHO05D007280 5.7e-210 734.2 400 83.8
Solyc11g012160.2 Solanum lycopersicum HOM05D005487 ORTHO05D007280 2.2e-209 732.3 400 83.2
Rhsim13G0146300 Rhododendron simsii HOM05D005487 ORTHO05D007280 6.3e-209 730.7 427 80.1
Sopen11g006950 Solanum pennellii HOM05D005487 ORTHO05D007280 8.2e-209 730.3 400 83.0
RhsimUnG0109400 Rhododendron simsii HOM05D005487 ORTHO05D007280 1.8e-208 729.2 427 80.1
Cc09_g00910 Coffea canephora HOM05D005487 ORTHO05D007280 4.1e-208 728.0 400 83.2
Nitab4.5_0001198g0060 Nicotiana tabacum HOM05D005487 ORTHO05D007280 4.1e-208 728.0 400 83.2
TWI38G0871 Tripterygium wilfordii HOM05D005487 ORTHO05D007280 4.1e-208 728.0 400 84.0
Atru.chr1.2460 Acer truncatum HOM05D005487 ORTHO05D007280 5.3e-208 727.6 400 85.0
Duzib192G1033 Durio zibethinus HOM05D005487 ORTHO05D007280 6.9e-208 727.2 400 83.8
Potri.006G009200 Populus trichocarpa HOM05D005487 ORTHO05D007280 1.5e-207 726.1 400 82.8
Thecc.06G232800 Theobroma cacao HOM05D005487 ORTHO05D007280 2.9e-206 721.8 400 83.5
Ciclev10015367m.g Citrus clementina HOM05D005487 ORTHO05D007280 3.8e-206 721.5 400 84.0
FvH4_3g01030 Fragaria vesca HOM05D005487 ORTHO05D007280 1.4e-205 719.5 400 82.0
RcHm_v2.0_Chr5g0001571 Rosa chinensis HOM05D005487 ORTHO05D007280 2.5e-205 718.8 400 82.0
GSVIVG01003351001 Vitis vinifera HOM05D005487 ORTHO05D007280 3.2e-205 718.4 400 82.5
Cpa.g.sc75.119 Carica papaya HOM05D005487 ORTHO05D007280 4.2e-205 718.0 400 82.2
PGR004G0814 Punica granatum HOM05D005487 ORTHO05D007280 4.2e-205 718.0 400 82.2
HanXRQChr10g0284101 Helianthus annuus HOM05D005487 ORTHO05D007280 5.5e-205 717.6 402 82.3
MBI19_g29429_MAGBIO Magnolia biondii HOM05D005487 ORTHO05D007280 1.2e-204 716.5 400 82.0
Prupe.4G011100 Prunus persica HOM05D005487 ORTHO05D007280 6.1e-204 714.1 400 82.0
CAN.G1186.29 Capsicum annuum HOM05D005487 ORTHO05D007280 7.9e-204 713.8 401 82.5
COL.COLO4_31878 Corchorus olitorius HOM05D005487 ORTHO05D007280 2.3e-203 712.2 401 81.5
FAN21G2054 Fragaria x ananassa HOM05D005487 ORTHO05D007280 3.0e-203 711.8 400 81.5
Sopen04g006840 Solanum pennellii HOM05D005487 ORTHO05D007280 3.0e-203 711.8 400 82.0
FAN25G0861 Fragaria x ananassa HOM05D005487 ORTHO05D007280 1.1e-202 709.9 397 81.9
Peaxi162Scf00558g00518 Petunia axillaris HOM05D005487 ORTHO05D007280 2.0e-202 709.1 440 75.9
CANSAT56G2574 Cannabis sativa HOM05D005487 ORTHO05D007280 3.3e-202 708.4 400 80.8
Solyc04g014730.4 Solanum lycopersicum HOM05D005487 ORTHO05D007280 4.3e-202 708.0 400 81.0
MD10G1331100 Malus domestica HOM05D005487 ORTHO05D007280 7.4e-202 707.2 398 81.9
PGSC0003DMG400023608 Solanum tuberosum HOM05D005487 ORTHO05D007280 7.4e-202 707.2 400 81.2
SalBow8G2024 Salvia bowleyana HOM05D005487 ORTHO05D007280 1.3e-201 706.4 400 80.8
MSTRG.16025 Avicennia marina HOM05D005487 ORTHO05D007280 4.8e-201 704.5 400 81.5
CAN.G1263.14 Capsicum annuum HOM05D005487 ORTHO05D007280 4.8e-201 704.5 401 81.0
PSO210G3736 Papaver somniferum HOM05D005487 ORTHO05D007280 1.4e-200 703.0 400 80.0
Gohir.A05G174500 Gossypium hirsutum HOM05D005487 ORTHO05D007280 2.4e-200 702.2 400 81.5
Gohir.A06G205600 Gossypium hirsutum HOM05D005487 ORTHO05D007280 2.4e-200 702.2 400 81.5
Sed0025030 Sechium edule HOM05D005487 ORTHO05D007280 3.1e-200 701.8 400 80.2
PSO764G0115 Papaver somniferum HOM05D005487 ORTHO05D007280 4.1e-200 701.4 400 80.2
Hund23409 Selenicereus undatus HOM05D005487 ORTHO05D007280 5.3e-200 701.0 395 81.3
EL10Ac8g20177 Beta vulgaris HOM05D005487 ORTHO05D007280 6.9e-200 700.7 400 79.5
Gorai.010G250300 Gossypium raimondii HOM05D005487 ORTHO05D007280 1.2e-199 699.9 400 81.2
Gorai.009G182900 Gossypium raimondii HOM05D005487 ORTHO05D007280 1.5e-199 699.5 400 81.2
Gohir.D06G215900 Gossypium hirsutum HOM05D005487 ORTHO05D007280 5.9e-199 697.6 400 81.0
AUR62021869 Chenopodium quinoa HOM05D005487 ORTHO05D007280 1.0e-198 696.8 401 80.5
AL1G23300 Arabidopsis lyrata HOM05D005487 ORTHO05D007280 3.8e-198 694.9 398 79.9
Lsat_1_v5_gn_8_64401 Lactuca sativa HOM05D005487 ORTHO05D007280 5.0e-198 694.5 405 81.0
arahy.Tifrunner.gnm1.ann1.8PBE23 Arachis hypogaea HOM05D005487 ORTHO05D007280 6.5e-198 694.1 400 78.0
Gohir.D05G177500 Gossypium hirsutum HOM05D005487 ORTHO05D007280 1.4e-197 693.0 400 80.5
THA.LOC104809472 Tarenaya hassleriana HOM05D005487 ORTHO05D007280 1.9e-197 692.6 398 80.9
CARHR012410 Cardamine hirsuta HOM05D005487 ORTHO05D007280 2.5e-197 692.2 398 79.1
arahy.Tifrunner.gnm1.ann1.61KG5W Arachis hypogaea HOM05D005487 ORTHO05D007280 3.2e-197 691.8 400 77.8
ClCG01G021500 Citrullus lanatus HOM05D005487 ORTHO05D007280 3.2e-197 691.8 401 80.3
AT1G12050 Arabidopsis thaliana HOM05D005487 ORTHO05D007280 9.4e-197 690.3 398 79.9
Eucgr.L00543 Eucalyptus grandis HOM05D005487 ORTHO05D007280 3.6e-196 688.3 433 74.8
Peaxi162Scf00442g00414 Petunia axillaris HOM05D005487 ORTHO05D007280 6.1e-196 687.6 437 73.2
PGSC0003DMG400013273 Solanum tuberosum HOM05D005487 ORTHO05D007280 7.9e-196 687.2 485 68.0
CsaV3_6G048520 Cucumis sativus L. HOM05D005487 ORTHO05D007280 3.0e-195 685.3 401 79.8
Sp1g10720 Schrenkiella parvula HOM05D005487 ORTHO05D007280 6.7e-195 684.1 398 78.4
Aqoxy1G04106 Aquilegia oxysepala HOM05D005487 ORTHO05D007280 8.8e-195 683.7 404 78.0
MELO3C007433.2 Cucumis melo HOM05D005487 ORTHO05D007280 8.8e-195 683.7 401 79.8
BolC5t29858H Brassica oleracea HOM05D005487 ORTHO05D007280 1.1e-194 683.3 398 78.1
Thhalv10007724m.g Eutrema salsugineum HOM05D005487 ORTHO05D007280 1.1e-194 683.3 398 78.6
BcaC05g25225 Brassica carinata HOM05D005487 ORTHO05D007280 2.0e-194 682.6 398 78.1
BraA06t24129Z Brassica rapa HOM05D005487 ORTHO05D007280 2.6e-194 682.2 398 78.1
Carub.0001s1173 Capsella rubella HOM05D005487 ORTHO05D007280 2.6e-194 682.2 398 78.1
A06p09440 Brassica napus HOM05D005487 ORTHO05D007280 4.4e-194 681.4 398 78.1
Lalb_Chr15g0087971 Lupinus albus HOM05D005487 ORTHO05D007280 4.4e-194 681.4 400 76.8
Psat1g176520 Pisum sativum HOM05D005487 ORTHO05D007280 4.4e-194 681.4 398 76.6
Ca_00719_v3 Cicer arietinum L. HOM05D005487 ORTHO05D007280 5.7e-194 681.0 398 76.9
C05p11110 Brassica napus HOM05D005487 ORTHO05D007280 9.7e-194 680.2 398 77.9
BcaB02g06431 Brassica carinata HOM05D005487 ORTHO05D007280 1.3e-193 679.9 399 77.7
Phvul.006G143500 Phaseolus vulgaris HOM05D005487 ORTHO05D007280 1.7e-193 679.5 400 76.0
Medtr2g025640 Medicago truncatula HOM05D005487 ORTHO05D007280 2.2e-193 679.1 398 76.6
ATR1101G021 Amborella trichopoda HOM05D005487 ORTHO05D007280 3.7e-193 678.3 401 77.8
Lj6g0015557 Lotus japonicus HOM05D005487 ORTHO05D007280 8.2e-193 677.2 398 76.9
SGA_v2.0_scaffold7G03757 Striga asiatica HOM05D005487 ORTHO05D007280 1.1e-192 676.8 410 77.8
VMungo0540G1792 Vigna mungo HOM05D005487 ORTHO05D007280 3.1e-192 675.2 398 76.1
TPR.G13057 Trifolium pratense HOM05D005487 ORTHO05D007280 4.1e-192 674.9 398 76.1
HPP92_003014 Vanilla planifolia HOM05D005487 ORTHO05D007280 1.2e-191 673.3 407 75.2
HPP92_027542 Vanilla planifolia HOM05D005487 ORTHO05D007280 2.6e-191 672.2 408 75.5
Aa31LG1G2680 Aethionema arabicum HOM05D005487 ORTHO05D007280 4.5e-191 671.4 398 77.6
Glyma.15G114300 Glycine max HOM05D005487 ORTHO05D007280 1.9e-189 666.0 398 74.4
Haze_06922 Corylus avellana HOM05D005487 ORTHO05D007280 4.7e-188 661.4 414 76.6
Glyma.09G010000 Glycine max HOM05D005487 ORTHO05D007280 8.0e-188 660.6 398 74.9
Haze_06917 Corylus avellana HOM05D005487 ORTHO05D007280 6.3e-185 651.0 438 72.1
CDE07G0927 Ceratophyllum demersum HOM05D005487 ORTHO05D007280 8.2e-185 650.6 410 75.1
Sabra06G0007000 Salix brachista HOM05D005487 ORTHO05D007280 2.4e-184 649.0 419 74.0
AUR62012785 Chenopodium quinoa HOM05D005487 ORTHO05D007280 7.2e-181 637.5 402 75.1
Os02g0196800 Oryza sativa ssp. japonica HOM05D005487 ORTHO05D007280 4.7e-180 634.8 402 69.7
Zm00001eb236160 Zea mays HOM05D005487 ORTHO05D007280 8.8e-179 630.6 400 69.8
unitig_0.g999 Utricularia gibba HOM05D005487 ORTHO05D007280 1.5e-178 629.8 365 77.8
DCAR_027826 Daucus carota HOM05D005487 ORTHO05D007280 1.8e-176 622.9 400 73.2
Zm00001eb205930 Zea mays HOM05D005487 ORTHO05D007280 6.4e-161 571.2 382 66.8
Duzib235G0086 Durio zibethinus HOM05D005487 ORTHO05D007280 1.1e-160 570.5 354 76.3
Migut.M01391 Erythranthe guttata HOM05D005487 ORTHO05D007280 5.0e-158 561.6 400 68.0
CSS0007230 Camellia sinensis var. sinensis HOM05D005487 ORTHO05D007280 1.9e-157 559.7 419 67.8
SMO137G0224 Selaginella moellendorffii HOM05D005487 ORTHO05D007280 1.3e-153 547.0 400 65.2
Mapoly0022s0035 Marchantia polymorpha HOM05D005487 ORTHO05D007280 6.4e-153 544.7 399 62.4
Pp3c4_7990 Physcomitrium patens HOM05D005487 ORTHO05D007280 8.3e-153 544.3 400 63.5
Sc17g0007720 Simmondsia chinensis HOM05D005487 ORTHO05D007280 4.1e-152 542.0 282 86.9
AagrBONN_evm.TU.Sc2ySwM_344.3343 Anthoceros agrestis HOM05D005487 ORTHO05D007280 5.0e-150 535.0 399 62.9
Ah.09g234260 Amaranthus hybridus HOM05D005487 ORTHO05D007280 2.0e-146 523.1 400 64.5
Pp3c13_16620 Physcomitrium patens HOM05D005487 ORTHO05D007280 9.8e-146 520.8 358 67.0
ECA236G3803 Erigeron canadensis HOM05D005487 ORTHO05D007280 3.2e-136 489.2 275 81.5
Haze_26411 Corylus avellana HOM05D005487 ORTHO05D007280 1.9e-133 479.9 404 54.7
RcHm_v2.0_Chr3g0477951 Rosa chinensis HOM05D005487 ORTHO05D007280 5.8e-122 441.8 452 54.4
CBR_g46703 Chara braunii HOM05D005487 ORTHO05D007280 4.9e-121 438.7 469 47.8
RcHm_v2.0_Chr3g0484131 Rosa chinensis HOM05D005487 ORTHO05D007280 5.1e-118 428.7 446 53.6
Cre17.g732802 Chlamydomonas reinhardtii HOM05D005487 ORTHO05D007280 6.7e-118 428.3 396 53.3
PRCOL_00001448 Prasinoderma coloniale HOM05D005487 ORTHO05D007280 8.2e-108 394.8 401 50.9
Gorai.001G209700 Gossypium raimondii HOM05D005487 ORTHO05D007280 1.6e-39 167.9 98 75.5
SEGI_36702 Sequoiadendron giganteum HOM05D005487 ORTHO05D007280 2.8e-31 140.6 93 69.9
C06p15210 Brassica napus HOM05D005487 ORTHO05D042797 4.0e-30 136.7 89 69.7
BolC6t36696H Brassica oleracea HOM05D005487 ORTHO05D042797 4.0e-30 136.7 89 69.7
Gohir.D07G188750 Gossypium hirsutum HOM05D005487 ORTHO05D007280 8.1e-23 112.5 98 56.1
COL.COLO4_27266 Corchorus olitorius HOM05D000025 ORTHO05D000040 1.2e-21 108.6 136 43.4
RcHm_v2.0_Chr5g0003621 Rosa chinensis HOM05D005487 ORTHO05D007280 5.8e-21 106.3 85 61.2
BcaC08g44100 Brassica carinata HOM05D005487 ORTHO05D027150 3.2e-19 100.5 69 65.2
BolC9t55424H Brassica oleracea HOM05D005487 ORTHO05D027150 7.1e-19 99.4 66 69.7
Gohir.D13G151750 Gossypium hirsutum HOM05D005487 ORTHO05D007280 7.1e-19 99.4 55 78.2
BcaC04g21976 Brassica carinata HOM05D005487 ORTHO05D027150 1.6e-18 98.2 69 65.2
C09p25260 Brassica napus HOM05D005487 ORTHO05D027150 6.6e-17 92.8 64 67.2
SEGI_21127 Sequoiadendron giganteum HOM05D000023 ORTHO05D000014 4.2e-11 73.6 68 51.5
Pp3c6_20080 Physcomitrium patens HOM05D004309 ORTHO05D005588 5.1e-09 66.6 204 26.0
SEGI_02276 Sequoiadendron giganteum HOM05D004309 ORTHO05D005588 2.8e-07 60.8 231 23.4
TAR381G0287 Trochodendron aralioides HOM05D005487 ORTHO05D415274 6.2e-07 59.7 36 69.4


User provided reference genes

Program Settings