Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv07304 Davidia involucrata HOM05D000129 ORTHO05D184227 1.5e-65 252.7 124 100.0
Dinv05350 Davidia involucrata HOM05D000129 ORTHO05D000144 1.3e-16 90.1 82 59.8
Ciclev10014091m.g Citrus clementina HOM05D000129 ORTHO05D000144 1.2e-11 73.6 81 45.7
Dinv07872 Davidia involucrata HOM05D000129 ORTHO05D000144 1.6e-11 73.2 71 49.3
Haze_12685 Corylus avellana HOM05D000129 ORTHO05D000144 5.2e-10 68.2 70 50.0
Dinv07868 Davidia involucrata HOM05D000129 ORTHO05D013397 5.2e-10 68.2 80 47.5
Sed0008089 Sechium edule HOM05D000129 ORTHO05D000144 5.2e-10 68.2 71 43.7
Sed0025560 Sechium edule HOM05D000129 ORTHO05D000144 5.2e-10 68.2 78 39.7
Atru.chr6.3367 Acer truncatum HOM05D000129 ORTHO05D000144 6.8e-10 67.8 68 50.0
PGR042G3416 Punica granatum HOM05D000129 ORTHO05D000144 4.4e-09 65.1 91 38.5
Actinidia21443 Actinidia chinensis HOM05D000129 ORTHO05D000144 5.7e-09 64.7 70 48.6
Cfa014239 Carpinus fangiana HOM05D000129 ORTHO05D000144 7.5e-09 64.3 70 41.4
Sed0000347 Sechium edule HOM05D000129 ORTHO05D000144 2.8e-08 62.4 70 38.6
Haze_12683 Corylus avellana HOM05D000129 ORTHO05D000144 4.9e-08 61.6 70 41.4
Lj3C723T3 Lonicera japonica HOM05D000129 ORTHO05D000144 6.3e-08 61.2 51 51.0
Lj3C723T5 Lonicera japonica HOM05D000129 ORTHO05D000144 6.3e-08 61.2 51 51.0
Lj3P722T29 Lonicera japonica HOM05D000129 ORTHO05D000144 6.3e-08 61.2 51 51.0
Lj3P724T11 Lonicera japonica HOM05D000129 ORTHO05D000144 8.3e-08 60.8 51 52.9
Dinv21271 Davidia involucrata HOM05D000129 ORTHO05D013397 1.8e-07 59.7 81 37.0
Sc21g0000740 Simmondsia chinensis HOM05D000129 ORTHO05D000144 3.1e-07 58.9 64 48.4
PGR083G2490 Punica granatum HOM05D000129 ORTHO05D000144 4.1e-07 58.5 68 38.2
vmacro15384 Vaccinium macrocarpon HOM05D000129 ORTHO05D000144 4.1e-07 58.5 51 51.0
Cpa.g.sc44.133 Carica papaya HOM05D000129 ORTHO05D000144 5.4e-07 58.2 65 41.5
Rhsim02G0037800 Rhododendron simsii HOM05D000129 ORTHO05D000144 5.4e-07 58.2 51 51.0
Lj3C722T0 Lonicera japonica HOM05D000129 ORTHO05D000144 7.0e-07 57.8 51 47.1
Rhsim02G0030000 Rhododendron simsii HOM05D000129 ORTHO05D000144 7.0e-07 57.8 51 51.0
Rhsim02G0031000 Rhododendron simsii HOM05D000129 ORTHO05D000144 7.0e-07 57.8 51 51.0
Rhsim02G0031100 Rhododendron simsii HOM05D000129 ORTHO05D000144 7.0e-07 57.8 51 51.0
RhsimUnG0023300 Rhododendron simsii HOM05D000129 ORTHO05D000144 7.0e-07 57.8 51 51.0
RhsimUnG0184000 Rhododendron simsii HOM05D000129 ORTHO05D000144 7.0e-07 57.8 51 51.0
RhsimUnG0184200 Rhododendron simsii HOM05D000129 ORTHO05D000144 7.0e-07 57.8 51 51.0
TAR624G1359 Trochodendron aralioides HOM05D000129 ORTHO05D013397 7.0e-07 57.8 66 39.4
vmacro15390 Vaccinium macrocarpon HOM05D000129 ORTHO05D000144 7.0e-07 57.8 51 51.0
Rhsim02G0030200 Rhododendron simsii HOM05D000129 ORTHO05D011881 9.2e-07 57.4 51 49.0
Rhsim02G0030700 Rhododendron simsii HOM05D000129 ORTHO05D000144 9.2e-07 57.4 51 49.0
ClCG02G002760 Citrullus lanatus HOM05D000129 ORTHO05D000144 1.2e-06 57.0 69 36.2
Oeu063365.1 Olea europaea HOM05D000129 ORTHO05D000144 1.2e-06 57.0 51 47.1
QL08p028503 Quercus lobata HOM05D000129 ORTHO05D000144 1.2e-06 57.0 67 41.8
RcHm_v2.0_Chr2g0156561 Rosa chinensis HOM05D000129 ORTHO05D000144 1.2e-06 57.0 66 48.5
RcHm_v2.0_Chr2g0156581 Rosa chinensis HOM05D000129 ORTHO05D000144 1.2e-06 57.0 61 47.5
TAR365G0239 Trochodendron aralioides HOM05D000129 ORTHO05D000144 1.2e-06 57.0 58 43.1
DCAR_027246 Daucus carota HOM05D000129 ORTHO05D000144 1.6e-06 56.6 73 39.7
FvH4_4g01690 Fragaria vesca HOM05D000129 ORTHO05D000144 1.6e-06 56.6 51 49.0
FAN12G0748 Fragaria x ananassa HOM05D000129 ORTHO05D000144 1.6e-06 56.6 51 49.0
QL05p068541 Quercus lobata HOM05D000129 ORTHO05D000144 1.6e-06 56.6 68 38.2
FAN12G4228 Fragaria x ananassa HOM05D000129 ORTHO05D000144 2.0e-06 56.2 51 49.0
Gorai.001G221000 Gossypium raimondii HOM05D000129 ORTHO05D013397 2.0e-06 56.2 69 37.7
Phvul.004G046200 Phaseolus vulgaris HOM05D000129 ORTHO05D000144 2.0e-06 56.2 51 49.0
RcHm_v2.0_Chr4g0388501 Rosa chinensis HOM05D000129 ORTHO05D000144 2.0e-06 56.2 51 49.0
TAR624G1181 Trochodendron aralioides HOM05D000129 ORTHO05D000144 2.0e-06 56.2 66 37.9
Atru.chr6.3365 Acer truncatum HOM05D000129 ORTHO05D000144 2.7e-06 55.8 68 47.1
CSS0019080 Camellia sinensis var. sinensis HOM05D000129 ORTHO05D000144 2.7e-06 55.8 51 51.0
Cc03_g04420 Coffea canephora HOM05D002297 ORTHO05D002385 2.7e-06 55.8 73 41.1
DCAR_027250 Daucus carota HOM05D000129 ORTHO05D000144 2.7e-06 55.8 51 47.1
DCAR_027251 Daucus carota HOM05D000129 ORTHO05D000144 2.7e-06 55.8 51 47.1
Dinv08067 Davidia involucrata HOM05D000129 ORTHO05D000144 2.7e-06 55.8 74 35.1
Dinv32073 Davidia involucrata HOM05D000129 ORTHO05D013274 2.7e-06 55.8 83 39.8
FAN09G0206 Fragaria x ananassa HOM05D000129 ORTHO05D000144 2.7e-06 55.8 69 40.6
Prupe.3G200900 Prunus persica HOM05D000129 ORTHO05D000144 2.7e-06 55.8 70 42.9
RcHm_v2.0_Chr4g0388341 Rosa chinensis HOM05D000129 ORTHO05D000144 2.7e-06 55.8 51 49.0
RcHm_v2.0_Chr4g0388491 Rosa chinensis HOM05D000129 ORTHO05D000144 2.7e-06 55.8 51 49.0
Actinidia08463 Actinidia chinensis HOM05D000129 ORTHO05D000144 3.5e-06 55.5 62 38.7
Actinidia13958 Actinidia chinensis HOM05D000129 ORTHO05D000144 3.5e-06 55.5 62 38.7
DCAR_024185 Daucus carota HOM05D000129 ORTHO05D000144 3.5e-06 55.5 51 47.1
FAN02G0439 Fragaria x ananassa HOM05D000129 ORTHO05D000144 3.5e-06 55.5 69 42.0
FAN17G2751 Fragaria x ananassa HOM05D000129 ORTHO05D000144 3.5e-06 55.5 51 47.1
FAN17G3036 Fragaria x ananassa HOM05D000129 ORTHO05D000144 3.5e-06 55.5 51 47.1
Oeu058953.1 Olea europaea HOM05D000129 ORTHO05D000144 3.5e-06 55.5 64 42.2
QL05p068939 Quercus lobata HOM05D000129 ORTHO05D000144 3.5e-06 55.5 79 38.0
Rhsim02G0030800 Rhododendron simsii HOM05D000129 ORTHO05D000144 3.5e-06 55.5 51 49.0
RhsimUnG0183900 Rhododendron simsii HOM05D000129 ORTHO05D000144 3.5e-06 55.5 51 49.0
RcHm_v2.0_Chr4g0388251 Rosa chinensis HOM05D000129 ORTHO05D000144 3.5e-06 55.5 51 49.0
TAR633G0609 Trochodendron aralioides HOM05D000129 ORTHO05D000144 3.5e-06 55.5 64 42.2
vmacro09259 Vaccinium macrocarpon HOM05D000129 ORTHO05D000144 3.5e-06 55.5 51 49.0
vmacro09287 Vaccinium macrocarpon HOM05D000129 ORTHO05D000144 3.5e-06 55.5 51 49.0
vmacro22918 Vaccinium macrocarpon HOM05D000129 ORTHO05D000144 3.5e-06 55.5 51 49.0
VMungo0464G1308 Vigna mungo HOM05D000129 ORTHO05D000144 3.5e-06 55.5 51 47.1
Ciclev10006602m.g Citrus clementina HOM05D000129 ORTHO05D000144 4.5e-06 55.1 51 45.1
Dinv44591 Davidia involucrata HOM05D000129 ORTHO05D000144 4.5e-06 55.1 51 49.0
FAN17G1950 Fragaria x ananassa HOM05D000129 ORTHO05D000144 4.5e-06 55.1 51 47.1
FAN22G1461 Fragaria x ananassa HOM05D000129 ORTHO05D000144 4.5e-06 55.1 51 47.1
MD12G1240600 Malus domestica HOM05D000129 ORTHO05D000144 4.5e-06 55.1 64 42.2
Oeu058955.2 Olea europaea HOM05D000129 ORTHO05D000144 4.5e-06 55.1 51 47.1
Rhsim02G0039400 Rhododendron simsii HOM05D000129 ORTHO05D000144 4.5e-06 55.1 74 40.5
Thecc.04G240900 Theobroma cacao HOM05D000129 ORTHO05D000144 4.5e-06 55.1 51 47.1
Actinidia18526 Actinidia chinensis HOM05D000129 ORTHO05D000144 5.9e-06 54.7 51 49.0
Dinv44592 Davidia involucrata HOM05D000129 ORTHO05D000144 5.9e-06 54.7 51 47.1
Duzib177G0167 Durio zibethinus HOM05D000129 ORTHO05D000144 5.9e-06 54.7 49 42.9
FAN05G3882 Fragaria x ananassa HOM05D000129 ORTHO05D000144 5.9e-06 54.7 69 42.0
FAN14G2552 Fragaria x ananassa HOM05D000129 ORTHO05D000144 5.9e-06 54.7 67 44.8
Glyma.19G038600 Glycine max HOM05D000129 ORTHO05D000144 5.9e-06 54.7 51 47.1
Gohir.A09G220132 Gossypium hirsutum HOM05D000129 ORTHO05D000144 5.9e-06 54.7 51 47.1
Gohir.A11G248800 Gossypium hirsutum HOM05D000129 ORTHO05D000144 5.9e-06 54.7 58 41.4
Gorai.006G243500 Gossypium raimondii HOM05D000129 ORTHO05D000144 5.9e-06 54.7 51 47.1
Rhsim02G0038800 Rhododendron simsii HOM05D000129 ORTHO05D000144 5.9e-06 54.7 51 49.0
GSVIVG01021801001 Vitis vinifera HOM05D000129 ORTHO05D000144 5.9e-06 54.7 57 40.4
Actinidia08462 Actinidia chinensis HOM05D000129 ORTHO05D000144 7.7e-06 54.3 51 43.1
Ah.09g228220 Amaranthus hybridus HOM05D000129 ORTHO05D000144 7.7e-06 54.3 64 39.1
Haze_11244 Corylus avellana HOM05D000129 ORTHO05D000144 7.7e-06 54.3 68 41.2
Peaxi162Scf00758g00018 Petunia axillaris HOM05D000129 ORTHO05D000144 7.7e-06 54.3 79 35.4
QL11p032881 Quercus lobata HOM05D000129 ORTHO05D000144 7.7e-06 54.3 58 41.4
QL11p032901 Quercus lobata HOM05D000129 ORTHO05D000144 7.7e-06 54.3 58 41.4
TAR362G0428 Trochodendron aralioides HOM05D000129 ORTHO05D000144 7.7e-06 54.3 51 47.1
TAR362G1160 Trochodendron aralioides HOM05D000129 ORTHO05D000144 7.7e-06 54.3 73 35.6


User provided reference genes

Program Settings