Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv07222 Davidia involucrata HOM05D004006 ORTHO05D004585 1.5e-95 352.8 175 100.0
Dinv27317 Davidia involucrata HOM05D004006 ORTHO05D004585 1.2e-55 220.3 153 79.1
TAR628G0258 Trochodendron aralioides HOM05D004006 ORTHO05D004585 1.1e-53 213.8 159 68.6
Thecc.08G124900 Theobroma cacao HOM05D004006 ORTHO05D004585 5.4e-53 211.5 158 73.4
Duzib093G0488 Durio zibethinus HOM05D004006 ORTHO05D004585 2.2e-51 206.1 152 71.7
Duzib116G0782 Durio zibethinus HOM05D004006 ORTHO05D004585 1.9e-50 203.0 150 72.7
Hma1.2p1_0186F.1_g081800 Hydrangea macrophylla HOM05D004006 ORTHO05D004585 1.6e-49 199.9 144 70.8
Nn5g28281 Nelumbo nucifera HOM05D004006 ORTHO05D004585 6.1e-49 198.0 146 72.6
TAR376G1087 Trochodendron aralioides HOM05D004006 ORTHO05D004585 3.7e-46 188.7 147 65.3
Prupe.1G498100 Prunus persica HOM05D004006 ORTHO05D004585 1.1e-45 187.2 154 64.3
PGR044G2543 Punica granatum HOM05D004006 ORTHO05D004585 1.8e-45 186.4 165 64.8
Potri.002G083900 Populus trichocarpa HOM05D004006 ORTHO05D004585 7.0e-45 184.5 157 65.0
GSVIVG01008871001 Vitis vinifera HOM05D004006 ORTHO05D004585 7.0e-45 184.5 127 74.8
MD08G1163000 Malus domestica HOM05D004006 ORTHO05D004585 1.6e-44 183.3 151 63.6
MD15G1349700 Malus domestica HOM05D004006 ORTHO05D004585 3.5e-44 182.2 151 62.9
Eucgr.F04353 Eucalyptus grandis HOM05D004006 ORTHO05D004585 1.3e-43 180.3 162 63.6
Nn1g08787 Nelumbo nucifera HOM05D004006 ORTHO05D004585 1.3e-43 180.3 148 68.2
Lj7P340T24 Lonicera japonica HOM05D004006 ORTHO05D004585 3.8e-43 178.7 139 66.9
MBI16_g07656_MAGBIO Magnolia biondii HOM05D004006 ORTHO05D004585 3.8e-43 178.7 158 59.5
Cfa016015 Carpinus fangiana HOM05D004006 ORTHO05D004585 5.0e-43 178.3 157 65.0
Cc10_g11860 Coffea canephora HOM05D004006 ORTHO05D004585 1.9e-42 176.4 156 61.5
CSS0040709 Camellia sinensis var. sinensis HOM05D004006 ORTHO05D004585 5.6e-42 174.9 158 64.6
FAN27G3464 Fragaria x ananassa HOM05D004006 ORTHO05D004585 5.6e-42 174.9 150 63.3
CSS0019596 Camellia sinensis var. sinensis HOM05D004006 ORTHO05D004585 7.2e-42 174.5 156 64.7
CiPaw.06G030700 Carya illinoinensis HOM05D004006 ORTHO05D004585 7.2e-42 174.5 161 65.2
FAN24G3177 Fragaria x ananassa HOM05D004006 ORTHO05D004585 7.2e-42 174.5 150 63.3
RcHm_v2.0_Chr6g0295711 Rosa chinensis HOM05D004006 ORTHO05D004585 9.5e-42 174.1 150 62.7
FvH4_2g26860 Fragaria vesca HOM05D004006 ORTHO05D004585 2.1e-41 172.9 150 62.7
Manes.18G077000 Manihot esculenta HOM05D004006 ORTHO05D004585 2.8e-41 172.6 160 63.1
FAN20G2831 Fragaria x ananassa HOM05D004006 ORTHO05D004585 3.6e-41 172.2 150 62.7
COL.COLO4_35922 Corchorus olitorius HOM05D004006 ORTHO05D004585 6.1e-41 171.4 155 63.9
TWI56G0850 Tripterygium wilfordii HOM05D004006 ORTHO05D004585 6.1e-41 171.4 159 61.0
Gohir.D01G180600 Gossypium hirsutum HOM05D004006 ORTHO05D004585 8.0e-41 171.0 167 61.1
Gorai.002G222000 Gossypium raimondii HOM05D004006 ORTHO05D004585 8.0e-41 171.0 167 61.1
Haze_00445 Corylus avellana HOM05D004006 ORTHO05D004585 1.0e-40 170.6 164 62.2
Sed0014468 Sechium edule HOM05D004006 ORTHO05D004585 8.9e-40 167.5 143 59.4
Gohir.A01G188900 Gossypium hirsutum HOM05D004006 ORTHO05D004585 2.0e-39 166.4 167 60.5
ClCG08G005630 Citrullus lanatus HOM05D004006 ORTHO05D004585 2.6e-39 166.0 144 59.7
Peaxi162Scf00018g00027 Petunia axillaris HOM05D004006 ORTHO05D004585 2.6e-39 166.0 159 59.7
Gohir.A02G073100 Gossypium hirsutum HOM05D004006 ORTHO05D004585 3.4e-39 165.6 157 57.3
Gorai.005G089800 Gossypium raimondii HOM05D004006 ORTHO05D004585 3.4e-39 165.6 158 58.2
vmacro00834 Vaccinium macrocarpon HOM05D004006 ORTHO05D004585 4.4e-39 165.2 153 64.7
CsaV3_6G034510 Cucumis sativus L. HOM05D004006 ORTHO05D004585 5.7e-39 164.9 142 60.6
MELO3C010605.2 Cucumis melo HOM05D004006 ORTHO05D004585 7.5e-39 164.5 142 60.6
Gohir.D02G080400 Gossypium hirsutum HOM05D004006 ORTHO05D004585 7.5e-39 164.5 158 56.3
TWI36G0058 Tripterygium wilfordii HOM05D004006 ORTHO05D004585 7.5e-39 164.5 163 57.1
DCAR_014087 Daucus carota HOM05D004006 ORTHO05D004585 2.9e-38 162.5 149 65.8
RhsimUnG0092700 Rhododendron simsii HOM05D004006 ORTHO05D004585 6.4e-38 161.4 160 58.8
Potri.005G177600 Populus trichocarpa HOM05D004006 ORTHO05D004585 3.2e-37 159.1 151 58.9
TPR.G21067 Trifolium pratense HOM05D004006 ORTHO05D004585 3.2e-37 159.1 151 58.3
MSTRG.1442 Avicennia marina HOM05D004006 ORTHO05D004585 1.6e-36 156.8 147 58.5
Duzib041G0805 Durio zibethinus HOM05D004006 ORTHO05D004585 1.6e-36 156.8 122 67.2
THA.LOC104813655 Tarenaya hassleriana HOM05D004006 ORTHO05D004585 2.7e-36 156.0 142 62.0
Oeu050916.1 Olea europaea HOM05D004006 ORTHO05D004585 7.8e-36 154.5 161 57.1
CANSAT25G0779 Cannabis sativa HOM05D004006 ORTHO05D004585 1.0e-35 154.1 164 56.1
Oeu050917.2 Olea europaea HOM05D004006 ORTHO05D004585 1.3e-35 153.7 161 57.1
Gorai.009G245700 Gossypium raimondii HOM05D004006 ORTHO05D004585 1.9e-34 149.8 152 60.5
Lj1g0016270 Lotus japonicus HOM05D004006 ORTHO05D004585 1.9e-34 149.8 164 57.3
Nitab4.5_0016080g0010 Nicotiana tabacum HOM05D004006 ORTHO05D004585 5.6e-34 148.3 150 59.3
Ca_16556_v3 Cicer arietinum L. HOM05D004006 ORTHO05D004585 1.2e-33 147.1 161 55.3
Gohir.A05G235000 Gossypium hirsutum HOM05D004006 ORTHO05D004585 1.2e-33 147.1 152 59.2
Gohir.D05G237300 Gossypium hirsutum HOM05D004006 ORTHO05D004585 1.2e-33 147.1 152 59.9
Medtr3g088010 Medicago truncatula HOM05D004006 ORTHO05D004585 6.2e-33 144.8 160 55.6
THA.LOC104800196 Tarenaya hassleriana HOM05D004006 ORTHO05D004585 6.2e-33 144.8 149 58.4
Nitab4.5_0000051g0220 Nicotiana tabacum HOM05D004006 ORTHO05D004585 8.0e-33 144.4 153 59.5
Glyma.06G113000 Glycine max HOM05D004006 ORTHO05D004585 1.4e-32 143.7 148 54.1
Aqoxy6G00215 Aquilegia oxysepala HOM05D004006 ORTHO05D004585 4.0e-32 142.1 168 50.6
PGSC0003DMG400027788 Solanum tuberosum HOM05D004006 ORTHO05D004585 5.2e-32 141.7 152 56.6
CDE02G3357 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 6.8e-32 141.4 139 54.7
MSTRG.22410 Avicennia marina HOM05D004006 ORTHO05D004585 1.5e-31 140.2 150 54.0
Ciclev10002301m.g Citrus clementina HOM05D004006 ORTHO05D004585 1.5e-31 140.2 159 56.6
Phvul.009G124900 Phaseolus vulgaris HOM05D004006 ORTHO05D004585 2.6e-31 139.4 149 57.7
Sopen11g008440 Solanum pennellii HOM05D004006 ORTHO05D004585 2.6e-31 139.4 152 55.9
arahy.Tifrunner.gnm1.ann1.CFE04G Arachis hypogaea HOM05D004006 ORTHO05D004585 3.4e-31 139.0 154 53.2
Actinidia29465 Actinidia chinensis HOM05D004006 ORTHO05D004585 4.4e-31 138.7 152 50.0
CARHR022190 Cardamine hirsuta HOM05D004006 ORTHO05D004585 4.4e-31 138.7 145 53.8
Manes.02G162900 Manihot esculenta HOM05D004006 ORTHO05D004585 4.4e-31 138.7 154 52.6
Oeu026152.1 Olea europaea HOM05D004006 ORTHO05D004585 1.3e-30 137.1 149 50.3
Actinidia03470 Actinidia chinensis HOM05D004006 ORTHO05D004585 1.7e-30 136.7 122 58.2
arahy.Tifrunner.gnm1.ann1.J26PKP Arachis hypogaea HOM05D004006 ORTHO05D004585 1.7e-30 136.7 154 52.6
Solyc11g013450.2 Solanum lycopersicum HOM05D004006 ORTHO05D004585 2.9e-30 136.0 152 54.6
Thhalv10008805m.g Eutrema salsugineum HOM05D004006 ORTHO05D004585 1.1e-29 134.0 146 54.1
Rhsim06G0103600 Rhododendron simsii HOM05D004006 ORTHO05D004585 1.9e-29 133.3 148 57.4
SGA_v2.0_scaffold52G18967 Striga asiatica HOM05D004006 ORTHO05D004585 1.9e-29 133.3 152 54.6
Glyma.04G249900 Glycine max HOM05D004006 ORTHO05D004585 2.4e-29 132.9 145 54.5
Oeu047951.1 Olea europaea HOM05D004006 ORTHO05D004585 3.2e-29 132.5 148 54.1
VMungo1309G2318 Vigna mungo HOM05D004006 ORTHO05D004585 5.4e-29 131.7 150 55.3
Lalb_Chr10g0101721 Lupinus albus HOM05D004006 ORTHO05D004585 7.0e-29 131.3 146 52.1
Psat5g087920 Pisum sativum HOM05D004006 ORTHO05D004585 9.2e-29 131.0 144 52.1
Actinidia21321 Actinidia chinensis HOM05D004006 ORTHO05D004585 1.6e-28 130.2 168 56.0
AL1G35020 Arabidopsis lyrata HOM05D004006 ORTHO05D004585 2.0e-28 129.8 149 53.0
Carub.0001s2127 Capsella rubella HOM05D004006 ORTHO05D004585 6.0e-28 128.3 150 52.7
EL10Ac1g01007 Beta vulgaris HOM05D004006 ORTHO05D004585 7.8e-28 127.9 177 50.3
Hund17292 Selenicereus undatus HOM05D004006 ORTHO05D004585 7.8e-28 127.9 175 46.3
CDE08G0380 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 1.3e-27 127.1 116 57.8
Sp1g19380 Schrenkiella parvula HOM05D004006 ORTHO05D004585 3.0e-27 125.9 145 54.5
Atru.chr13.1448 Acer truncatum HOM05D004006 ORTHO05D004585 3.9e-27 125.6 153 52.9
Atru.chr13.1472 Acer truncatum HOM05D004006 ORTHO05D004585 3.9e-27 125.6 153 52.9
ATR0584G004 Amborella trichopoda HOM05D004006 ORTHO05D004585 5.0e-27 125.2 137 51.1
MSTRG.25384 Avicennia marina HOM05D004006 ORTHO05D004585 1.1e-26 124.0 147 54.4
BcaB03g14254 Brassica carinata HOM05D004006 ORTHO05D004585 2.5e-26 122.9 143 52.4
BcaC06g34904 Brassica carinata HOM05D004006 ORTHO05D004585 2.5e-26 122.9 144 52.1
C07p21950 Brassica napus HOM05D004006 ORTHO05D004585 2.5e-26 122.9 144 52.1
BolC7t42725H Brassica oleracea HOM05D004006 ORTHO05D004585 2.5e-26 122.9 144 52.1
Lalb_Chr08g0241451 Lupinus albus HOM05D004006 ORTHO05D004585 5.6e-26 121.7 155 51.6
A07p14920 Brassica napus HOM05D004006 ORTHO05D004585 7.3e-26 121.3 144 51.4
BraA07t29235Z Brassica rapa HOM05D004006 ORTHO05D004585 7.3e-26 121.3 144 51.4
BcaC07g39124 Brassica carinata HOM05D004006 ORTHO05D004585 1.6e-25 120.2 146 50.0
C08p21130 Brassica napus HOM05D004006 ORTHO05D004585 1.6e-25 120.2 146 50.0
BolC8t49750H Brassica oleracea HOM05D004006 ORTHO05D004585 1.6e-25 120.2 146 50.0
Oeu059434.1 Olea europaea HOM05D004006 ORTHO05D004585 1.6e-25 120.2 148 50.7
AT1G21830 Arabidopsis thaliana HOM05D004006 ORTHO05D004585 2.8e-25 119.4 149 49.7
A08p28790 Brassica napus HOM05D004006 ORTHO05D004585 2.8e-25 119.4 146 49.3
BraA08t34808Z Brassica rapa HOM05D004006 ORTHO05D004585 2.8e-25 119.4 146 49.3
Migut.C01125 Erythranthe guttata HOM05D004006 ORTHO05D004585 8.1e-25 117.9 144 48.6
SalBow6G7056 Salvia bowleyana HOM05D004006 ORTHO05D004585 1.8e-24 116.7 124 51.6
Lalb_Chr23g0271011 Lupinus albus HOM05D004006 ORTHO05D004585 2.3e-24 116.3 136 52.9
Glyma.13G079800 Glycine max HOM05D004006 ORTHO05D004585 6.8e-24 114.8 151 49.0
A06p17910 Brassica napus HOM05D004006 ORTHO05D004585 2.0e-23 113.2 149 47.7
MBI09_g12159_MAGBIO Magnolia biondii HOM05D004006 ORTHO05D004585 2.0e-23 113.2 132 48.5
BraA06t24881Z Brassica rapa HOM05D004006 ORTHO05D004585 2.6e-23 112.8 149 47.0
BcaB07g32181 Brassica carinata HOM05D004006 ORTHO05D004585 3.4e-23 112.5 149 47.0
BcaC05g26103 Brassica carinata HOM05D004006 ORTHO05D004585 3.4e-23 112.5 149 47.0
C05p20810 Brassica napus HOM05D004006 ORTHO05D004585 3.4e-23 112.5 149 47.0
BolC5t30780H Brassica oleracea HOM05D004006 ORTHO05D004585 3.4e-23 112.5 149 47.0
BcaB03g11881 Brassica carinata HOM05D004006 ORTHO05D004585 1.7e-22 110.2 139 47.5
Gorai.009G283200 Gossypium raimondii HOM05D004006 ORTHO05D004585 2.9e-22 109.4 118 52.5
Lj4C625T3 Lonicera japonica HOM05D004006 ORTHO05D004585 2.9e-22 109.4 83 68.7
Gohir.D05G270600 Gossypium hirsutum HOM05D004006 ORTHO05D004585 3.7e-22 109.0 118 52.5
VMungo0647G0089 Vigna mungo HOM05D004006 ORTHO05D004585 1.4e-21 107.1 99 52.5
BcaB07g32179 Brassica carinata HOM05D004006 ORTHO05D004585 4.1e-21 105.5 149 46.3
Migut.N03284 Erythranthe guttata HOM05D004006 ORTHO05D004585 7.1e-21 104.8 123 48.0
PSO170G2295 Papaver somniferum HOM05D004006 ORTHO05D004585 7.1e-21 104.8 189 41.8
PSO528G0204 Papaver somniferum HOM05D004006 ORTHO05D004585 1.2e-20 104.0 180 42.8
AUR62014339 Chenopodium quinoa HOM05D004006 ORTHO05D004585 2.7e-20 102.8 130 51.5
Glyma.14G150000 Glycine max HOM05D004006 ORTHO05D004585 3.5e-20 102.4 138 48.6
SGA_v2.0_scaffold24G10460 Striga asiatica HOM05D004006 ORTHO05D004585 5.1e-19 98.6 122 48.4
Aa31LG7G5780 Aethionema arabicum HOM05D004006 ORTHO05D004585 9.5e-18 94.4 145 44.1
THA.LOC104806821 Tarenaya hassleriana HOM05D004006 ORTHO05D004585 1.8e-16 90.1 136 39.0
THA.LOC104817318 Tarenaya hassleriana HOM05D004006 ORTHO05D004585 1.8e-16 90.1 132 40.2
SalBow7G3581 Salvia bowleyana HOM05D004006 ORTHO05D004585 6.8e-16 88.2 138 42.8
HPP92_011945 Vanilla planifolia HOM05D004006 ORTHO05D004585 2.0e-15 86.7 151 37.7
HPP92_011964 Vanilla planifolia HOM05D004006 ORTHO05D004585 2.0e-15 86.7 151 37.7
HanXRQChr04g0125261 Helianthus annuus HOM05D004006 ORTHO05D004585 3.4e-15 85.9 152 42.1
SGA_v2.0_scaffold25G11123 Striga asiatica HOM05D004006 ORTHO05D004585 4.4e-15 85.5 126 44.4
Lsat_1_v5_gn_5_101481 Lactuca sativa HOM05D004006 ORTHO05D004585 2.2e-14 83.2 136 42.6
Hund26811 Selenicereus undatus HOM05D004006 ORTHO05D004585 6.4e-14 81.6 129 41.1
CDE06G0283 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 1.9e-13 80.1 137 40.1
Os04g0690500 Oryza sativa ssp. japonica HOM05D004006 ORTHO05D004585 3.0e-11 72.8 173 36.4
CDE08G1629 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 1.1e-10 70.9 124 38.7
CARHR035970 Cardamine hirsuta HOM05D004006 ORTHO05D004585 3.6e-09 65.9 141 36.2
Gohir.A05G268750 Gossypium hirsutum HOM05D004006 ORTHO05D004585 1.1e-08 64.3 70 52.9
Carub.0001s3524 Capsella rubella HOM05D004006 ORTHO05D004585 2.4e-08 63.2 154 32.5
Ah.05g171110 Amaranthus hybridus HOM05D004006 ORTHO05D004585 8.9e-08 61.2 93 43.0
AL1G52380 Arabidopsis lyrata HOM05D004006 ORTHO05D004585 8.9e-08 61.2 134 35.1
Sp1g33590 Schrenkiella parvula HOM05D004006 ORTHO05D004585 4.4e-07 58.9 136 34.6
PSO017G3194 Papaver somniferum HOM05D004006 ORTHO05D004585 7.6e-07 58.2 192 31.8
CDE12G0877 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 4.9e-06 55.5 124 34.7


User provided reference genes

Program Settings