Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv07105 Davidia involucrata HOM05D001532 ORTHO05D001402 8.6e-31 136.3 69 100.0
Dinv43942 Davidia involucrata HOM05D001532 ORTHO05D001402 7.1e-17 90.1 52 88.5
FvH4_7g00040 Fragaria vesca HOM05D001532 ORTHO05D001402 6.0e-16 87.0 51 86.3
FAN03G1035 Fragaria x ananassa HOM05D001532 ORTHO05D001402 6.0e-16 87.0 51 86.3
FAN06G0369 Fragaria x ananassa HOM05D001532 ORTHO05D001402 6.0e-16 87.0 51 86.3
FAN01G2178 Fragaria x ananassa HOM05D001532 ORTHO05D001402 7.8e-16 86.7 51 86.3
Cpa.g.c26789.3 Carica papaya HOM05D001532 ORTHO05D001402 1.0e-15 86.3 51 84.3
MD02G1319800 Malus domestica HOM05D001532 ORTHO05D001402 1.0e-15 86.3 51 86.3
QL04p001582 Quercus lobata HOM05D001532 ORTHO05D001402 1.0e-15 86.3 51 86.3
Cfa010707 Carpinus fangiana HOM05D001532 ORTHO05D001402 1.7e-15 85.5 51 86.3
RcHm_v2.0_Chr1g0331981 Rosa chinensis HOM05D001532 ORTHO05D001402 1.7e-15 85.5 51 84.3
RcHm_v2.0_Chr5g0065041 Rosa chinensis HOM05D001532 ORTHO05D001402 1.7e-15 85.5 51 84.3
RcHm_v2.0_Chr4g0404011 Rosa chinensis HOM05D001532 ORTHO05D001402 2.3e-15 85.1 51 84.3
Sp4g26380 Schrenkiella parvula HOM05D001532 ORTHO05D001402 2.3e-15 85.1 51 84.3
COL.COLO4_29440 Corchorus olitorius HOM05D001532 ORTHO05D001402 3.0e-15 84.7 51 84.3
FAN10G0410 Fragaria x ananassa HOM05D001532 ORTHO05D001402 3.0e-15 84.7 51 84.3
Hma1.2p1_0541F.1_g174820 Hydrangea macrophylla HOM05D001532 ORTHO05D001402 3.0e-15 84.7 52 80.8
FAN01G2635 Fragaria x ananassa HOM05D001532 ORTHO05D001402 3.9e-15 84.3 51 84.3
AT2G44310 Arabidopsis thaliana HOM05D001532 ORTHO05D001402 5.1e-15 84.0 51 84.3
Haze_03271 Corylus avellana HOM05D005429 ORTHO05D001402 6.6e-15 83.6 51 82.4
Thhalv10001674m.g Eutrema salsugineum HOM05D001532 ORTHO05D001402 6.6e-15 83.6 51 82.4
BcaB01g03320 Brassica carinata HOM05D001532 ORTHO05D001402 8.7e-15 83.2 51 80.4
CARHR139480 Cardamine hirsuta HOM05D001532 ORTHO05D001402 8.7e-15 83.2 51 82.4
TAR623G0472 Trochodendron aralioides HOM05D001532 ORTHO05D001402 8.7e-15 83.2 52 82.7
AL4G43270 Arabidopsis lyrata HOM05D001532 ORTHO05D001402 1.1e-14 82.8 51 82.4
Migut.B01403 Erythranthe guttata HOM05D001532 ORTHO05D001402 1.5e-14 82.4 51 82.4
Eucgr.E01779 Eucalyptus grandis HOM05D001532 ORTHO05D001402 1.5e-14 82.4 51 84.3
RcHm_v2.0_Chr1g0313211 Rosa chinensis HOM05D001532 ORTHO05D001402 1.5e-14 82.4 51 82.4
BolC3t15301H Brassica oleracea HOM05D001532 ORTHO05D001402 2.5e-14 81.6 51 78.4
BraA03t11682Z Brassica rapa HOM05D001532 ORTHO05D001402 2.5e-14 81.6 51 78.4
CSS0029713 Camellia sinensis var. sinensis HOM05D001532 ORTHO05D001402 2.5e-14 81.6 52 78.8
Ciclev10033019m.g Citrus clementina HOM05D001532 ORTHO05D001402 2.5e-14 81.6 51 82.4
Duzib093G0614 Durio zibethinus HOM05D001532 ORTHO05D001402 2.5e-14 81.6 51 82.4
Sabra16G0138600 Salix brachista HOM05D001532 ORTHO05D001402 2.5e-14 81.6 51 80.4
Carub.0004s2690 Capsella rubella HOM05D001532 ORTHO05D001402 3.3e-14 81.3 51 80.4
Cc02_g26870 Coffea canephora HOM05D001532 ORTHO05D001402 3.3e-14 81.3 52 76.9
Gohir.A04G057000 Gossypium hirsutum HOM05D001532 ORTHO05D001402 3.3e-14 81.3 51 82.4
Gohir.D04G094000 Gossypium hirsutum HOM05D001532 ORTHO05D001402 3.3e-14 81.3 51 82.4
Gorai.009G393300 Gossypium raimondii HOM05D001532 ORTHO05D001402 3.3e-14 81.3 51 82.4
MBI13_g42369_MAGBIO Magnolia biondii HOM05D001532 ORTHO05D001402 3.3e-14 81.3 51 82.4
Prupe.2G002300 Prunus persica HOM05D001532 ORTHO05D001402 3.3e-14 81.3 51 78.4
Thecc.05G180700 Theobroma cacao HOM05D001532 ORTHO05D001402 3.3e-14 81.3 51 82.4
Oeu060704.1 Olea europaea HOM05D001532 ORTHO05D001402 4.3e-14 80.9 51 80.4
Potri.001G231100 Populus trichocarpa HOM05D001532 ORTHO05D001402 4.3e-14 80.9 51 80.4
PGR142G1780 Punica granatum HOM05D001532 ORTHO05D001402 4.3e-14 80.9 51 80.4
SGA_v2.0_scaffold5G03105 Striga asiatica HOM05D001532 ORTHO05D001402 4.3e-14 80.9 51 80.4
THA.LOC104817147 Tarenaya hassleriana HOM05D001532 ORTHO05D001402 4.3e-14 80.9 51 80.4
Atru.chr11.2710 Acer truncatum HOM05D001532 ORTHO05D001402 5.6e-14 80.5 51 80.4
C03p29520 Brassica napus HOM05D001532 ORTHO05D001402 7.3e-14 80.1 51 76.5
vmacro13607 Vaccinium macrocarpon HOM05D001532 ORTHO05D001402 7.3e-14 80.1 51 78.4
Sed0007522 Sechium edule HOM05D001532 ORTHO05D001402 9.6e-14 79.7 51 76.5
BcaC01g05176 Brassica carinata HOM05D001532 ORTHO05D001402 1.3e-13 79.3 51 76.5
A03p24750 Brassica napus HOM05D001532 ORTHO05D001402 1.3e-13 79.3 51 76.5
CiPaw.14G074900 Carya illinoinensis HOM05D001532 ORTHO05D001402 1.3e-13 79.3 51 78.4
Lj3g0006104 Lotus japonicus HOM05D001532 ORTHO05D001402 1.3e-13 79.3 51 78.4
Actinidia05842 Actinidia chinensis HOM05D001532 ORTHO05D001402 2.1e-13 78.6 52 75.0
Aa31LG1G25920 Aethionema arabicum HOM05D001343 ORTHO05D002008 2.1e-13 78.6 51 78.4
CSS0002101 Camellia sinensis var. sinensis HOM05D001532 ORTHO05D001402 2.8e-13 78.2 52 75.0
CSS0009032 Camellia sinensis var. sinensis HOM05D001532 ORTHO05D001402 2.8e-13 78.2 52 75.0
CSS0020845 Camellia sinensis var. sinensis HOM05D001532 ORTHO05D001402 2.8e-13 78.2 52 75.0
CDE05G2849 Ceratophyllum demersum HOM05D001532 ORTHO05D001402 2.8e-13 78.2 52 75.0
CDE05G3642 Ceratophyllum demersum HOM05D001532 ORTHO05D001402 2.8e-13 78.2 52 75.0
ClCG10G012730 Citrullus lanatus HOM05D001532 ORTHO05D001402 2.8e-13 78.2 51 76.5
Glyma.15G217700 Glycine max HOM05D001532 ORTHO05D001402 3.6e-13 77.8 51 76.5
Nn2g15744 Nelumbo nucifera HOM05D001532 ORTHO05D001402 3.6e-13 77.8 52 75.0
DCAR_029589 Daucus carota HOM05D001532 ORTHO05D001402 4.8e-13 77.4 51 80.4
Gohir.A01G198700 Gossypium hirsutum HOM05D001532 ORTHO05D001402 4.8e-13 77.4 51 76.5
Gohir.D01G188900 Gossypium hirsutum HOM05D001532 ORTHO05D001402 4.8e-13 77.4 51 76.5
Gorai.002G232400 Gossypium raimondii HOM05D001532 ORTHO05D001402 4.8e-13 77.4 51 76.5
Lj7P562T18 Lonicera japonica HOM05D001532 ORTHO05D001402 4.8e-13 77.4 52 73.1
SalBow5G4956 Salvia bowleyana HOM05D001532 ORTHO05D001402 1.1e-12 76.3 51 74.5
Solyc01g073710.2 Solanum lycopersicum HOM05D001532 ORTHO05D001402 1.1e-12 76.3 51 74.5
Sopen01g033280 Solanum pennellii HOM05D001532 ORTHO05D001402 1.1e-12 76.3 51 74.5
PGSC0003DMG400028985 Solanum tuberosum HOM05D001532 ORTHO05D001402 1.1e-12 76.3 51 74.5
TWI09G0577 Tripterygium wilfordii HOM05D001532 ORTHO05D001402 1.1e-12 76.3 51 74.5
Actinidia25682 Actinidia chinensis HOM05D001532 ORTHO05D001402 1.4e-12 75.9 49 77.6
Actinidia31713 Actinidia chinensis HOM05D001532 ORTHO05D001402 1.4e-12 75.9 49 77.6
arahy.Tifrunner.gnm1.ann1.M3EH65 Arachis hypogaea HOM05D001532 ORTHO05D001402 1.4e-12 75.9 51 72.5
Phvul.011G181100 Phaseolus vulgaris HOM05D001532 ORTHO05D001402 1.4e-12 75.9 51 76.5
Manes.10G152600 Manihot esculenta HOM05D001532 ORTHO05D001402 2.4e-12 75.1 51 72.5
Nitab4.5_0000468g0100 Nicotiana tabacum HOM05D001532 ORTHO05D001402 2.4e-12 75.1 51 72.5
Nitab4.5_0002319g0010 Nicotiana tabacum HOM05D001532 ORTHO05D001402 2.4e-12 75.1 51 72.5
unitig_0.g1367 Utricularia gibba HOM05D001532 ORTHO05D001402 2.4e-12 75.1 51 74.5
vmacro13606 Vaccinium macrocarpon HOM05D001532 ORTHO05D001402 2.4e-12 75.1 52 73.1
Lj9P619T33 Lonicera japonica HOM05D001532 ORTHO05D001402 3.1e-12 74.7 51 72.5
Ah.15g095040 Amaranthus hybridus HOM05D001532 ORTHO05D001402 4.0e-12 74.3 51 72.5
Aqoxy1G00154 Aquilegia oxysepala HOM05D001532 ORTHO05D001402 5.3e-12 73.9 52 69.2
PSO339G4993 Papaver somniferum HOM05D001532 ORTHO05D001402 5.3e-12 73.9 51 72.5
PSO801G0571 Papaver somniferum HOM05D001532 ORTHO05D001402 5.3e-12 73.9 51 72.5
VMungo1127G1150 Vigna mungo HOM05D001532 ORTHO05D001402 5.3e-12 73.9 51 74.5
Nn7g35962 Nelumbo nucifera HOM05D001532 ORTHO05D001402 6.9e-12 73.6 52 71.2
AUR62001423 Chenopodium quinoa HOM05D001532 ORTHO05D001402 9.0e-12 73.2 51 72.5
MELO3C023929.2 Cucumis melo HOM05D001532 ORTHO05D001402 9.0e-12 73.2 51 68.6
CsaV3_3G032560 Cucumis sativus L. HOM05D001532 ORTHO05D001402 9.0e-12 73.2 51 66.7
Lsat_1_v5_gn_7_33641 Lactuca sativa HOM05D001532 ORTHO05D001402 9.0e-12 73.2 51 70.6
AUR62009947 Chenopodium quinoa HOM05D001532 ORTHO05D001402 1.2e-11 72.8 51 72.5
Rhsim07G0049600 Rhododendron simsii HOM05D001532 ORTHO05D001402 1.5e-11 72.4 49 73.5
unitig_61.g26436 Utricularia gibba HOM05D001532 ORTHO05D001402 1.5e-11 72.4 51 70.6
MSTRG.28102 Avicennia marina HOM05D001532 ORTHO05D001402 2.0e-11 72.0 51 70.6
Ca_11281_v3 Cicer arietinum L. HOM05D001532 ORTHO05D001402 2.0e-11 72.0 51 66.7
ECA236G3146 Erigeron canadensis HOM05D001532 ORTHO05D001402 2.0e-11 72.0 51 68.6
Medtr8g446810 Medicago truncatula HOM05D001532 ORTHO05D001402 2.6e-11 71.6 51 64.7
Dinv43501 Davidia involucrata HOM05D000126 ORTHO05D001402 3.4e-11 71.2 42 83.3
TPR.G27881 Trifolium pratense HOM05D001532 ORTHO05D001402 4.5e-11 70.9 51 66.7
vmacro22464 Vaccinium macrocarpon HOM05D001532 ORTHO05D001402 5.8e-11 70.5 51 70.6
Mapoly0031s0092 Marchantia polymorpha HOM05D001532 ORTHO05D001402 9.9e-11 69.7 51 70.6
HPP92_023475 Vanilla planifolia HOM05D001532 ORTHO05D001402 9.9e-11 69.7 52 65.4
Peaxi162Scf00402g00084 Petunia axillaris HOM05D001532 ORTHO05D001402 1.3e-10 69.3 51 64.7
Lsat_1_v5_gn_8_151781 Lactuca sativa HOM05D001532 ORTHO05D001402 1.7e-10 68.9 51 66.7
CAN.G129.51 Capsicum annuum HOM05D001532 ORTHO05D001402 2.9e-10 68.2 51 68.6
Sc15g0000750 Simmondsia chinensis HOM05D001532 ORTHO05D001402 2.9e-10 68.2 51 66.7
HPP92_023457 Vanilla planifolia HOM05D001532 ORTHO05D001402 2.9e-10 68.2 52 63.5
ATR0598G207 Amborella trichopoda HOM05D001532 ORTHO05D001402 3.8e-10 67.8 51 66.7
Zm00001eb019830 Zea mays HOM05D001532 ORTHO05D001402 3.8e-10 67.8 52 65.4
Psat4g142600 Pisum sativum HOM05D001532 ORTHO05D001402 4.9e-10 67.4 51 62.7
EL10Ac7g16472 Beta vulgaris HOM05D001532 ORTHO05D001402 6.4e-10 67.0 51 64.7
Dinv06817 Davidia involucrata HOM05D001532 ORTHO05D001402 8.4e-10 66.6 43 76.7
ECA236G2154 Erigeron canadensis HOM05D001532 ORTHO05D001402 8.4e-10 66.6 51 66.7
MSTRG.28103 Avicennia marina HOM05D001532 ORTHO05D001402 1.4e-09 65.9 51 62.7
ECA234G3020 Erigeron canadensis HOM05D001532 ORTHO05D001402 2.4e-09 65.1 51 58.8
Lsat_1_v5_gn_4_42441 Lactuca sativa HOM05D001532 ORTHO05D001402 2.4e-09 65.1 51 58.8
Os03g0411300 Oryza sativa ssp. japonica HOM05D001532 ORTHO05D001402 7.1e-09 63.5 52 61.5
Lsat_1_v5_gn_3_4101 Lactuca sativa HOM05D001532 ORTHO05D001402 9.3e-09 63.2 51 60.8
ATR0598G352 Amborella trichopoda HOM05D001532 ORTHO05D001402 7.9e-08 60.1 50 60.0
SMO137G0091 Selaginella moellendorffii HOM05D001532 ORTHO05D001402 3.0e-07 58.2 50 58.0
Dinv44677 Davidia involucrata HOM05D001488 ORTHO05D001456 3.9e-07 57.8 38 76.3
AagrBONN_evm.TU.Sc2ySwM_117.2724 Anthoceros agrestis HOM05D001532 ORTHO05D001402 6.7e-07 57.0 50 58.0
Pp3c27_7790 Physcomitrium patens HOM05D001532 ORTHO05D001402 1.1e-06 56.2 48 58.3
PSO384G0371 Papaver somniferum HOM05D001532 ORTHO05D001402 1.5e-06 55.8 51 54.9
PSO339G2407 Papaver somniferum HOM05D001532 ORTHO05D001402 7.4e-06 53.5 51 52.9
MBI13_g29648_MAGBIO Magnolia biondii HOM05D001532 ORTHO05D001402 9.6e-06 53.1 31 83.9
Os09g0483500 Oryza sativa ssp. japonica HOM05D001532 ORTHO05D001402 9.6e-06 53.1 51 52.9


User provided reference genes

Program Settings