Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv07026 Davidia involucrata HOM05D003824 ORTHO05D001594 1.2e-181 640.2 437 100.0
Dinv01909 Davidia involucrata HOM05D003824 ORTHO05D001594 1.2e-109 401.0 241 84.2
CSS0003003 Camellia sinensis var. sinensis HOM05D003824 ORTHO05D001594 1.2e-82 311.2 251 67.3
Thecc.02G300900 Theobroma cacao HOM05D003824 ORTHO05D001594 2.2e-79 300.4 243 68.7
Hma1.2p1_0068F.1_g037290 Hydrangea macrophylla HOM05D003824 ORTHO05D001594 7.0e-78 295.4 248 70.6
Rhsim09G0082700 Rhododendron simsii HOM05D003824 ORTHO05D001594 2.5e-75 287.0 249 63.9
GSVIVG01011569001 Vitis vinifera HOM05D003824 ORTHO05D001594 3.3e-75 286.6 249 66.3
Lj3A858T45 Lonicera japonica HOM05D003824 ORTHO05D001594 4.3e-75 286.2 245 65.3
Duzib251G0867 Durio zibethinus HOM05D003824 ORTHO05D001594 5.6e-75 285.8 242 65.3
QL03p040635 Quercus lobata HOM05D003824 ORTHO05D001594 3.1e-73 280.0 247 66.0
Actinidia37486 Actinidia chinensis HOM05D003824 ORTHO05D001594 1.7e-71 274.2 268 58.6
Duzib248G0765 Durio zibethinus HOM05D003824 ORTHO05D001594 1.9e-70 270.8 237 62.4
Cc11_g05230 Coffea canephora HOM05D003824 ORTHO05D001594 7.1e-70 268.9 250 62.8
Gohir.D01G135900 Gossypium hirsutum HOM05D003824 ORTHO05D001594 5.1e-68 262.7 248 62.5
Gorai.002G170200 Gossypium raimondii HOM05D003824 ORTHO05D001594 5.1e-68 262.7 248 62.5
Gohir.A01G144600 Gossypium hirsutum HOM05D003824 ORTHO05D001594 1.9e-67 260.8 248 62.1
TAR622G0215 Trochodendron aralioides HOM05D003824 ORTHO05D001594 4.3e-67 259.6 242 60.3
vmacro10757 Vaccinium macrocarpon HOM05D003824 ORTHO05D001594 4.7e-66 256.1 255 60.8
Manes.17G091300 Manihot esculenta HOM05D003824 ORTHO05D001594 6.8e-65 252.3 244 60.2
Potri.010G100700 Populus trichocarpa HOM05D003824 ORTHO05D001594 1.2e-64 251.5 241 62.2
Oeu024856.1 Olea europaea HOM05D003824 ORTHO05D001594 7.6e-64 248.8 251 60.2
Oeu044066.1 Olea europaea HOM05D003824 ORTHO05D001594 3.5e-61 240.0 247 58.3
CiPaw.05G160300 Carya illinoinensis HOM05D003824 ORTHO05D001594 3.3e-59 233.4 243 57.2
Sabra10G0073200 Salix brachista HOM05D003824 ORTHO05D001594 5.6e-59 232.6 249 58.6
Haze_10751 Corylus avellana HOM05D003824 ORTHO05D001594 7.3e-59 232.3 251 57.4
Manes.15G140200 Manihot esculenta HOM05D003824 ORTHO05D001594 9.6e-59 231.9 237 58.6
TWI53G0580 Tripterygium wilfordii HOM05D003824 ORTHO05D001594 1.6e-58 231.1 249 57.4
Nn4g24636 Nelumbo nucifera HOM05D003824 ORTHO05D001594 2.8e-58 230.3 240 57.1
Ciclev10016179m.g Citrus clementina HOM05D003824 ORTHO05D001594 1.4e-57 228.0 264 57.2
Potri.008G140900 Populus trichocarpa HOM05D003824 ORTHO05D001594 4.0e-57 226.5 247 57.1
COL.COLO4_27553 Corchorus olitorius HOM05D003824 ORTHO05D001594 1.7e-55 221.1 249 57.0
Nn3g18495 Nelumbo nucifera HOM05D003824 ORTHO05D001594 1.7e-55 221.1 242 56.2
Nitab4.5_0001529g0010 Nicotiana tabacum HOM05D003824 ORTHO05D001594 3.2e-54 216.9 254 55.1
Sabra08G0106900 Salix brachista HOM05D003824 ORTHO05D001594 2.1e-53 214.2 247 56.3
PGR142G4244 Punica granatum HOM05D003824 ORTHO05D001594 3.5e-53 213.4 256 51.6
Phvul.002G185400 Phaseolus vulgaris HOM05D003824 ORTHO05D001594 7.8e-53 212.2 252 53.6
TAR374G0003 Trochodendron aralioides HOM05D003824 ORTHO05D001594 1.0e-52 211.8 241 53.1
VMungo0251G2986 Vigna mungo HOM05D003824 ORTHO05D001594 1.0e-52 211.8 256 53.1
MSTRG.2100 Avicennia marina HOM05D003824 ORTHO05D001594 1.7e-52 211.1 248 52.8
TWI74G0156 Tripterygium wilfordii HOM05D003824 ORTHO05D001594 3.9e-52 209.9 250 54.8
Glyma.05G136600 Glycine max HOM05D003824 ORTHO05D001594 1.9e-51 207.6 253 52.6
Glyma.08G091800 Glycine max HOM05D003824 ORTHO05D001594 5.6e-51 206.1 254 52.8
DCAR_002640 Daucus carota HOM05D003824 ORTHO05D001594 7.3e-51 205.7 258 52.3
DCAR_026837 Daucus carota HOM05D003824 ORTHO05D001594 1.6e-50 204.5 255 51.4
MD16G1011100 Malus domestica HOM05D003824 ORTHO05D001594 2.4e-49 200.7 274 51.1
MD13G1013900 Malus domestica HOM05D003824 ORTHO05D001594 5.3e-49 199.5 273 50.9
FAN17G0989 Fragaria x ananassa HOM05D003824 ORTHO05D001594 5.8e-48 196.1 269 50.2
FvH4_4g35920 Fragaria vesca HOM05D003824 ORTHO05D001594 9.9e-48 195.3 273 49.1
Eucgr.B02634 Eucalyptus grandis HOM05D003824 ORTHO05D001594 1.3e-47 194.9 221 54.3
Nitab4.5_0003241g0040 Nicotiana tabacum HOM05D003824 ORTHO05D001594 2.2e-47 194.1 217 56.7
FAN12G4100 Fragaria x ananassa HOM05D003824 ORTHO05D001594 3.8e-47 193.4 273 48.7
Lalb_Chr07g0188021 Lupinus albus HOM05D003824 ORTHO05D001594 4.9e-47 193.0 258 50.0
RcHm_v2.0_Chr4g0445521 Rosa chinensis HOM05D003824 ORTHO05D001594 4.9e-47 193.0 231 53.7
FAN07G0800 Fragaria x ananassa HOM05D003824 ORTHO05D001594 1.9e-46 191.0 273 48.7
MSTRG.13651 Avicennia marina HOM05D003824 ORTHO05D001594 2.4e-46 190.7 246 50.0
TAR374G0520 Trochodendron aralioides HOM05D003824 ORTHO05D001594 5.4e-46 189.5 205 54.6
MBI13_g47388_MAGBIO Magnolia biondii HOM05D003824 ORTHO05D001594 6.0e-45 186.0 233 51.9
Lj4g0002501 Lotus japonicus HOM05D003824 ORTHO05D001594 7.9e-45 185.7 263 47.9
FAN22G0848 Fragaria x ananassa HOM05D003824 ORTHO05D001594 1.7e-44 184.5 238 52.5
DCAR_030320 Daucus carota HOM05D003824 ORTHO05D001594 2.3e-44 184.1 258 49.6
HanXRQChr16g0527671 Helianthus annuus HOM05D003824 ORTHO05D001594 1.1e-43 181.8 249 49.8
Lsat_1_v5_gn_4_22080 Lactuca sativa HOM05D003824 ORTHO05D001594 1.9e-43 181.0 250 46.8
Psat7g085960 Pisum sativum HOM05D003824 ORTHO05D001594 4.3e-43 179.9 262 47.7
Atru.chr11.978 Acer truncatum HOM05D003824 ORTHO05D001594 9.6e-43 178.7 283 46.6
TPR.G11955 Trifolium pratense HOM05D003824 ORTHO05D001594 6.2e-42 176.0 255 48.2
Prupe.1G339600 Prunus persica HOM05D003824 ORTHO05D001594 1.8e-41 174.5 269 46.5
Solyc01g005010.4 Solanum lycopersicum HOM05D003824 ORTHO05D001594 1.3e-39 168.3 242 46.3
MBI19_g02927_MAGBIO Magnolia biondii HOM05D003824 ORTHO05D001594 7.1e-38 162.5 198 51.5
Ca_18200_v3 Cicer arietinum L. HOM05D003824 ORTHO05D001594 4.6e-37 159.8 213 50.7
Cpa.g.c30279.2 Carica papaya HOM05D003824 ORTHO05D001594 1.8e-36 157.9 214 50.0
CAN.G282.91 Capsicum annuum HOM05D003824 ORTHO05D001594 2.3e-36 157.5 243 46.1
Peaxi162Scf00349g00216 Petunia axillaris HOM05D003824 ORTHO05D001594 2.3e-36 157.5 267 46.1
Migut.E00571 Erythranthe guttata HOM05D003824 ORTHO05D001594 3.0e-36 157.1 276 43.8
Sopen01g001100 Solanum pennellii HOM05D003824 ORTHO05D001594 3.0e-36 157.1 241 44.4
HanXRQChr17g0566501 Helianthus annuus HOM05D003824 ORTHO05D001594 1.9e-35 154.5 251 45.4
Lalb_Chr12g0209261 Lupinus albus HOM05D003824 ORTHO05D001594 2.1e-34 151.0 239 48.1
Hund04323 Selenicereus undatus HOM05D003824 ORTHO05D001594 1.4e-33 148.3 266 40.6
SGA_v2.0_scaffold348G49583 Striga asiatica HOM05D003824 ORTHO05D001594 3.4e-32 143.7 203 49.3
THA.LOC104824112 Tarenaya hassleriana HOM05D003824 ORTHO05D001594 1.0e-31 142.1 248 41.5
Sc23g0005370 Simmondsia chinensis HOM05D003824 ORTHO05D001594 2.2e-31 141.0 201 46.8
Aqoxy3G04050_Aqoxy3G04051 Aquilegia oxysepala HOM05D003824 ORTHO05D001594 3.8e-31 140.2 245 42.4
SalBow2G0473 Salvia bowleyana HOM05D003824 ORTHO05D001594 3.2e-30 137.1 248 43.5
AUR62017797 Chenopodium quinoa HOM05D003824 ORTHO05D001594 4.2e-30 136.7 286 38.1
ECA234G1081 Erigeron canadensis HOM05D003824 ORTHO05D001594 4.2e-30 136.7 209 46.9
SalBow2G0509 Salvia bowleyana HOM05D003824 ORTHO05D001594 1.6e-29 134.8 193 47.7
AL5G11180 Arabidopsis lyrata HOM05D003824 ORTHO05D001594 1.8e-28 131.3 230 43.0
Carub.0005s0100 Capsella rubella HOM05D003824 ORTHO05D001594 3.0e-28 130.6 231 41.6
Gohir.D04G186600 Gossypium hirsutum HOM05D003824 ORTHO05D001594 6.7e-28 129.4 203 39.4
TAR687G0001 Trochodendron aralioides HOM05D003824 ORTHO05D001594 6.7e-28 129.4 246 41.1
EL10Ac6g15384 Beta vulgaris HOM05D003824 ORTHO05D001594 1.5e-27 128.3 271 38.0
Sed0021361 Sechium edule HOM05D003824 ORTHO05D001594 1.9e-27 127.9 215 42.8
THA.LOC104805107 Tarenaya hassleriana HOM05D003824 ORTHO05D001594 2.5e-27 127.5 248 41.1
Sp2g13420 Schrenkiella parvula HOM05D003824 ORTHO05D001594 2.1e-26 124.4 233 41.6
CsaV3_5G017270 Cucumis sativus L. HOM05D003824 ORTHO05D001594 1.1e-25 122.1 265 38.9
AT2G01990 Arabidopsis thaliana HOM05D003824 ORTHO05D001594 1.4e-25 121.7 236 41.5
ClCG01G006870 Citrullus lanatus HOM05D003824 ORTHO05D001594 1.8e-25 121.3 226 42.0
BcaB07g30363 Brassica carinata HOM05D003824 ORTHO05D001594 4.1e-25 120.2 231 40.3
BolC8t52109H Brassica oleracea HOM05D003824 ORTHO05D001594 1.5e-24 118.2 231 38.1
Gorai.012G183000 Gossypium raimondii HOM05D003824 ORTHO05D001594 1.5e-24 118.2 203 37.4
AT1G14630 Arabidopsis thaliana HOM05D003824 ORTHO05D001594 2.0e-24 117.9 233 39.5
Thhalv10008716m.g Eutrema salsugineum HOM05D003824 ORTHO05D001594 2.0e-24 117.9 232 37.1
BcaC07g41555 Brassica carinata HOM05D003824 ORTHO05D001594 2.6e-24 117.5 231 38.1
A02p32560 Brassica napus HOM05D003824 ORTHO05D001594 2.6e-24 117.5 232 39.7
C08p45560 Brassica napus HOM05D003824 ORTHO05D001594 2.6e-24 117.5 231 38.1
BraA02t08274Z Brassica rapa HOM05D003824 ORTHO05D001594 2.6e-24 117.5 232 39.7
CARHR144590 Cardamine hirsuta HOM05D003824 ORTHO05D001594 2.6e-24 117.5 196 44.9
Nn4g24596 Nelumbo nucifera HOM05D003824 ORTHO05D001594 2.6e-24 117.5 222 40.1
AUR62003488 Chenopodium quinoa HOM05D003824 ORTHO05D001594 5.9e-24 116.3 209 40.7
Sed0010422 Sechium edule HOM05D003824 ORTHO05D001594 5.9e-24 116.3 204 41.7
BcaC03g17106 Brassica carinata HOM05D003824 ORTHO05D001594 7.6e-24 115.9 230 39.1
AL1G26600 Arabidopsis lyrata HOM05D003824 ORTHO05D001594 1.0e-23 115.5 231 39.4
Aa31LG2G7930 Aethionema arabicum HOM05D003824 ORTHO05D001594 1.3e-23 115.2 235 37.9
arahy.Tifrunner.gnm1.ann1.YNYX6A Arachis hypogaea HOM05D003824 ORTHO05D001594 1.3e-23 115.2 260 40.0
C02p50130 Brassica napus HOM05D003824 ORTHO05D001594 3.8e-23 113.6 230 38.7
BolC2t11091H Brassica oleracea HOM05D003824 ORTHO05D001594 3.8e-23 113.6 230 38.7
BraA06t24250Z Brassica rapa HOM05D003824 ORTHO05D001594 6.5e-23 112.8 231 36.8
C05p12590 Brassica napus HOM05D003824 ORTHO05D001594 8.4e-23 112.5 231 36.8
BolC5t30003H Brassica oleracea HOM05D003824 ORTHO05D001594 8.4e-23 112.5 231 36.8
Sp1g12990 Schrenkiella parvula HOM05D003824 ORTHO05D001594 1.1e-22 112.1 231 37.7
BcaB02g06532 Brassica carinata HOM05D003824 ORTHO05D001594 1.4e-22 111.7 231 36.8
A09p61980 Brassica napus HOM05D003824 ORTHO05D001594 1.9e-22 111.3 231 36.8
BraA06t24248Z Brassica rapa HOM05D003824 ORTHO05D001594 1.9e-22 111.3 231 36.8
A06p10680 Brassica napus HOM05D003824 ORTHO05D001594 3.2e-22 110.5 232 37.1
PSO063G7219 Papaver somniferum HOM05D003824 ORTHO05D001594 3.2e-22 110.5 240 34.6
Carub.0001s1439 Capsella rubella HOM05D003824 ORTHO05D001594 7.2e-22 109.4 231 37.2
BcaC05g25378 Brassica carinata HOM05D003824 ORTHO05D001594 9.3e-22 109.0 231 35.9
CARHR015130 Cardamine hirsuta HOM05D003824 ORTHO05D001594 9.3e-22 109.0 233 37.8
Lsat_1_v5_gn_5_35201 Lactuca sativa HOM05D003824 ORTHO05D001594 9.3e-22 109.0 156 43.6
PSO782G3794 Papaver somniferum HOM05D003824 ORTHO05D001594 9.3e-22 109.0 242 35.5
arahy.Tifrunner.gnm1.ann1.ES5X1M Arachis hypogaea HOM05D003824 ORTHO05D001594 2.7e-21 107.5 265 38.1
Thhalv10004908m.g Eutrema salsugineum HOM05D003824 ORTHO05D001594 6.1e-21 106.3 194 39.7
MELO3C005226.2 Cucumis melo HOM05D003824 ORTHO05D001594 3.9e-20 103.6 79 62.0
Gohir.A04G143300 Gossypium hirsutum HOM05D003824 ORTHO05D001594 1.9e-19 101.3 93 51.6
Aa31LG1G450 Aethionema arabicum HOM05D003824 ORTHO05D001594 5.7e-19 99.8 227 35.2
CANSAT78G0176 Cannabis sativa HOM05D003824 ORTHO05D001594 1.3e-18 98.6 50 82.0
Lj6P728T10 Lonicera japonica HOM05D003824 ORTHO05D001594 6.5e-15 86.3 59 61.0
HPP92_026737 Vanilla planifolia HOM05D003824 ORTHO05D001594 1.9e-14 84.7 209 29.7
CDE07G0997 Ceratophyllum demersum HOM05D003824 ORTHO05D001594 9.4e-14 82.4 226 31.4
SEGI_27861 Sequoiadendron giganteum HOM05D003824 ORTHO05D001594 9.4e-14 82.4 194 34.0
Zm00001eb037710 Zea mays HOM05D003824 ORTHO05D001594 6.1e-13 79.7 59 64.4
Ah.03g147270 Amaranthus hybridus HOM05D003824 ORTHO05D001594 5.1e-12 76.6 134 36.6
Aqoxy3G04044 Aquilegia oxysepala HOM05D003824 ORTHO05D001594 5.1e-12 76.6 48 62.5
HPP92_016178 Vanilla planifolia HOM05D003824 ORTHO05D001594 2.0e-11 74.7 46 65.2
Os09g0448500 Oryza sativa ssp. japonica HOM05D003824 ORTHO05D001594 3.3e-11 73.9 46 69.6
Zm00001eb314530 Zea mays HOM05D003824 ORTHO05D001594 3.3e-11 73.9 45 73.3
Zm00001eb100680 Zea mays HOM05D003824 ORTHO05D001594 4.3e-11 73.6 45 71.1
GSVIVG01035252001 Vitis vinifera HOM05D003824 ORTHO05D001594 7.4e-11 72.8 90 41.1
Zm00001eb193320 Zea mays HOM05D003824 ORTHO05D001594 1.3e-10 72.0 59 64.4
SEGI_11099 Sequoiadendron giganteum HOM05D003824 ORTHO05D001594 4.8e-10 70.1 53 56.6
SEGI_18764 Sequoiadendron giganteum HOM05D003824 ORTHO05D001594 4.8e-10 70.1 194 32.5
Lj6g0001325 Lotus japonicus HOM05D003824 ORTHO05D001594 2.4e-09 67.8 193 29.0
SEGI_19876 Sequoiadendron giganteum HOM05D003824 ORTHO05D001594 2.4e-09 67.8 61 50.8
SEGI_26299 Sequoiadendron giganteum HOM05D000437 ORTHO05D001594 3.1e-09 67.4 93 38.7
Zm00001eb256450 Zea mays HOM05D003824 ORTHO05D001594 5.3e-09 66.6 80 51.2
Glyma.02G241700 Glycine max HOM05D003824 ORTHO05D001594 7.7e-08 62.8 214 29.4
BcaC03g17671 Brassica carinata HOM05D003415 ORTHO05D001594 1.0e-07 62.4 44 56.8
Glyma.11G213200 Glycine max HOM05D003824 ORTHO05D001594 1.0e-07 62.4 188 28.7
Phvul.001G227400 Phaseolus vulgaris HOM05D003824 ORTHO05D001594 1.3e-07 62.0 204 28.4
Cpa.g.c30279.1 Carica papaya HOM05D003824 ORTHO05D001594 2.2e-07 61.2 29 86.2
VMungo1383G1870 Vigna mungo HOM05D003824 ORTHO05D001594 2.2e-07 61.2 116 37.1
Glyma.14G211400 Glycine max HOM05D003824 ORTHO05D001594 5.0e-07 60.1 70 45.7
arahy.Tifrunner.gnm1.ann1.CL5R4G Arachis hypogaea HOM05D003824 ORTHO05D001594 8.5e-07 59.3 43 51.2
Os01g0918100 Oryza sativa ssp. japonica HOM05D003415 ORTHO05D001594 8.5e-07 59.3 66 40.9
Psat5g142120 Pisum sativum HOM05D003824 ORTHO05D001594 1.1e-06 58.9 39 53.8
BraA02t08751Z Brassica rapa HOM05D003415 ORTHO05D001594 1.4e-06 58.5 212 27.8
Medtr3g064750 Medicago truncatula HOM05D003824 ORTHO05D001594 1.9e-06 58.2 186 25.3
TPR.G26698 Trifolium pratense HOM05D003824 ORTHO05D001594 1.9e-06 58.2 200 25.5
Nitab4.5_0000085g0290 Nicotiana tabacum HOM05D003415 ORTHO05D001594 2.5e-06 57.8 197 27.4
arahy.Tifrunner.gnm1.ann1.RN5M7S Arachis hypogaea HOM05D003824 ORTHO05D001594 3.2e-06 57.4 43 46.5
A02p37690 Brassica napus HOM05D003415 ORTHO05D001594 5.5e-06 56.6 180 28.9


User provided reference genes

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