Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv06988 Davidia involucrata HOM05D006219 ORTHO05D007562 2.5e-251 871.7 456 100.0
CSS0036761 Camellia sinensis var. sinensis HOM05D006219 ORTHO05D007562 3.9e-164 582.0 436 74.8
Lj2C39T18 Lonicera japonica HOM05D006219 ORTHO05D007562 2.4e-161 572.8 427 68.4
CiPaw.07G078300 Carya illinoinensis HOM05D006219 ORTHO05D007562 1.5e-160 570.1 435 71.0
Prupe.6G348600 Prunus persica HOM05D006219 ORTHO05D007562 1.1e-158 563.9 407 69.3
Cfa006329 Carpinus fangiana HOM05D006219 ORTHO05D007562 1.4e-158 563.5 434 68.9
Cpa.g.sc162.24 Carica papaya HOM05D006219 ORTHO05D007562 1.4e-156 557.0 433 67.2
Haze_04459 Corylus avellana HOM05D006219 ORTHO05D007562 3.0e-156 555.8 434 68.7
Duzib128G1627 Durio zibethinus HOM05D006219 ORTHO05D007562 5.1e-156 555.1 402 71.9
Atru.chr2.897 Acer truncatum HOM05D006219 ORTHO05D007562 7.4e-155 551.2 401 72.3
Thecc.05G275300 Theobroma cacao HOM05D006219 ORTHO05D007562 1.4e-153 547.0 432 68.8
Manes.09G149100 Manihot esculenta HOM05D006219 ORTHO05D007562 1.2e-152 543.9 446 66.8
TAR633G0272 Trochodendron aralioides HOM05D006219 ORTHO05D007562 1.5e-152 543.5 422 67.5
TWI36G0216 Tripterygium wilfordii HOM05D006219 ORTHO05D007562 6.5e-151 538.1 400 70.8
FAN05G4153 Fragaria x ananassa HOM05D006219 ORTHO05D007562 1.9e-150 536.6 437 65.2
Gorai.013G120100 Gossypium raimondii HOM05D006219 ORTHO05D007562 2.5e-150 536.2 432 67.6
Gohir.A13G103800 Gossypium hirsutum HOM05D006219 ORTHO05D007562 3.2e-150 535.8 430 67.2
Gohir.D13G107000 Gossypium hirsutum HOM05D006219 ORTHO05D007562 3.2e-150 535.8 432 67.8
MD12G1245900 Malus domestica HOM05D006219 ORTHO05D007562 9.4e-150 534.3 430 68.1
QL08p015782 Quercus lobata HOM05D006219 ORTHO05D007562 9.4e-150 534.3 443 68.2
QL03p031869 Quercus lobata HOM05D006219 ORTHO05D007562 1.2e-149 533.9 443 68.4
Potri.013G044900 Populus trichocarpa HOM05D006219 ORTHO05D007562 1.6e-149 533.5 441 64.9
FAN05G2712 Fragaria x ananassa HOM05D006219 ORTHO05D007562 4.7e-149 531.9 435 64.6
Lsat_1_v5_gn_2_107721 Lactuca sativa HOM05D006219 ORTHO05D007562 6.1e-149 531.6 438 63.7
FvH4_6g02280 Fragaria vesca HOM05D006219 ORTHO05D007562 1.8e-148 530.0 437 65.0
FAN02G1274 Fragaria x ananassa HOM05D006219 ORTHO05D007562 1.8e-148 530.0 438 65.3
FAN09G4845 Fragaria x ananassa HOM05D006219 ORTHO05D007562 9.7e-147 524.2 368 71.7
CANSAT54G2996 Cannabis sativa HOM05D006219 ORTHO05D007562 1.1e-145 520.8 435 63.9
Phvul.L001763 Phaseolus vulgaris HOM05D006219 ORTHO05D007562 7.0e-145 518.1 428 63.8
Lalb_Chr06g0168341 Lupinus albus HOM05D006219 ORTHO05D007562 1.7e-143 513.5 390 66.2
CsaV3_1G045560 Cucumis sativus L. HOM05D006219 ORTHO05D007562 6.5e-143 511.5 439 64.2
Sabra13G0041300 Salix brachista HOM05D006219 ORTHO05D007562 8.5e-143 511.1 427 62.8
PGR004G0430 Punica granatum HOM05D006219 ORTHO05D007562 5.5e-142 508.4 440 62.5
DCAR_030973 Daucus carota HOM05D006219 ORTHO05D007562 2.7e-141 506.1 391 66.0
MELO3C024664.2 Cucumis melo HOM05D006219 ORTHO05D007562 8.0e-141 504.6 437 63.2
Glyma.10G166900 Glycine max HOM05D006219 ORTHO05D007562 1.8e-140 503.4 405 66.2
ClCG06G009410 Citrullus lanatus HOM05D006219 ORTHO05D007562 5.2e-140 501.9 438 63.5
ECA238G2300 Erigeron canadensis HOM05D006219 ORTHO05D007562 5.7e-139 498.4 372 65.6
Sc06g0004060 Simmondsia chinensis HOM05D006219 ORTHO05D007562 5.7e-139 498.4 424 64.2
Actinidia06785 Actinidia chinensis HOM05D006219 ORTHO05D007562 9.7e-139 497.7 438 65.5
PGSC0003DMG400028668 Solanum tuberosum HOM05D006219 ORTHO05D007562 2.2e-138 496.5 444 60.6
VMungo0720G3050 Vigna mungo HOM05D006219 ORTHO05D007562 2.2e-138 496.5 430 62.1
Solyc11g006060.2 Solanum lycopersicum HOM05D006219 ORTHO05D007562 6.3e-138 495.0 444 60.4
HanXRQChr14g0458931 Helianthus annuus HOM05D006219 ORTHO05D007562 7.0e-137 491.5 431 59.4
Sopen11g002000 Solanum pennellii HOM05D006219 ORTHO05D007562 9.1e-137 491.1 444 59.9
Lj5g0004576 Lotus japonicus HOM05D006219 ORTHO05D007562 1.0e-135 487.6 404 63.1
Sed0012882 Sechium edule HOM05D006219 ORTHO05D007562 1.3e-135 487.3 366 68.6
Rhsim05G0175300 Rhododendron simsii HOM05D006219 ORTHO05D007562 3.8e-135 485.7 439 63.1
Ca_10007_v3 Cicer arietinum L. HOM05D006219 ORTHO05D007562 7.2e-134 481.5 420 62.6
DCAR_002178 Daucus carota HOM05D006219 ORTHO05D007562 1.2e-133 480.7 365 67.1
CAN.G582.15 Capsicum annuum HOM05D006219 ORTHO05D007562 2.7e-133 479.6 438 58.2
Aqoxy5G00261 Aquilegia oxysepala HOM05D006219 ORTHO05D007562 5.2e-132 475.3 421 61.5
Medtr1g079870 Medicago truncatula HOM05D006219 ORTHO05D007562 5.7e-131 471.9 370 65.1
HanXRQChr07g0201901 Helianthus annuus HOM05D006219 ORTHO05D007562 1.3e-130 470.7 372 62.1
PSO832G3978 Papaver somniferum HOM05D006219 ORTHO05D007562 1.2e-128 464.2 423 59.1
Peaxi162Scf00120g00021 Petunia axillaris HOM05D006219 ORTHO05D007562 1.6e-128 463.8 449 58.8
PSO210G1007 Papaver somniferum HOM05D006219 ORTHO05D007562 3.5e-128 462.6 423 58.9
Oeu029038.1 Olea europaea HOM05D006219 ORTHO05D007562 4.5e-128 462.2 427 60.2
Nitab4.5_0010345g0010 Nicotiana tabacum HOM05D006219 ORTHO05D007562 4.0e-124 449.1 442 58.4
Nitab4.5_0000856g0150 Nicotiana tabacum HOM05D006219 ORTHO05D007562 2.0e-123 446.8 445 58.2
THA.LOC104799246 Tarenaya hassleriana HOM05D006219 ORTHO05D007562 2.0e-123 446.8 447 56.6
unitig_748.g8683 Utricularia gibba HOM05D006219 ORTHO05D007562 2.7e-120 436.4 375 62.1
SalBow3G3408 Salvia bowleyana HOM05D006219 ORTHO05D007562 3.5e-120 436.0 444 55.6
AL6G40560 Arabidopsis lyrata HOM05D006219 ORTHO05D007562 4.5e-120 435.6 426 57.5
FAN14G1966 Fragaria x ananassa HOM05D006219 ORTHO05D007562 5.9e-120 435.3 437 57.0
FAN14G5007 Fragaria x ananassa HOM05D006219 ORTHO05D007562 1.3e-119 434.1 437 57.0
A06p37950 Brassica napus HOM05D006219 ORTHO05D007562 1.7e-119 433.7 433 55.9
C07p40330 Brassica napus HOM05D006219 ORTHO05D007562 1.7e-119 433.7 433 56.1
BcaNung02093 Brassica carinata HOM05D006219 ORTHO05D007562 3.8e-119 432.6 433 55.9
BolC7t44567H Brassica oleracea HOM05D006219 ORTHO05D007562 3.8e-119 432.6 433 55.9
Sp2g20170 Schrenkiella parvula HOM05D006219 ORTHO05D007562 3.8e-119 432.6 370 61.4
Aa31LG11G8710 Aethionema arabicum HOM05D006219 ORTHO05D007562 5.0e-119 432.2 433 54.5
AUR62037607 Chenopodium quinoa HOM05D006219 ORTHO05D007562 1.1e-118 431.0 425 54.6
BraA06t26711Z Brassica rapa HOM05D006219 ORTHO05D007562 3.3e-118 429.5 433 55.4
RcHm_v2.0_Chr3g0450031 Rosa chinensis HOM05D006219 ORTHO05D007562 7.3e-118 428.3 309 68.9
CARHR185150 Cardamine hirsuta HOM05D006219 ORTHO05D007562 3.6e-117 426.0 371 60.9
BcaNung01728 Brassica carinata HOM05D006219 ORTHO05D007562 3.0e-116 422.9 433 55.9
Thhalv10004236m.g Eutrema salsugineum HOM05D006219 ORTHO05D007562 5.2e-116 422.2 433 54.5
Aa31LG5G14970 Aethionema arabicum HOM05D006219 ORTHO05D007562 1.2e-115 421.0 370 59.5
Migut.F00810 Erythranthe guttata HOM05D006219 ORTHO05D007562 1.5e-115 420.6 439 55.4
CARHR078740 Cardamine hirsuta HOM05D006219 ORTHO05D007562 5.8e-115 418.7 371 58.5
AT5G28500 Arabidopsis thaliana HOM05D006219 ORTHO05D007562 4.9e-114 415.6 371 61.2
Thhalv10020727m.g Eutrema salsugineum HOM05D006219 ORTHO05D007562 6.4e-114 415.2 437 52.4
AT3G04550 Arabidopsis thaliana HOM05D006219 ORTHO05D007562 7.0e-113 411.8 441 53.5
Carub.0006s2578 Capsella rubella HOM05D006219 ORTHO05D007562 1.6e-112 410.6 370 58.9
CDE05G0955 Ceratophyllum demersum HOM05D006219 ORTHO05D007562 4.6e-112 409.1 368 59.8
BcaC09g47795 Brassica carinata HOM05D006219 ORTHO05D007562 3.0e-111 406.4 436 52.8
BolC1t05743H Brassica oleracea HOM05D006219 ORTHO05D007562 6.6e-111 405.2 441 52.6
Carub.0003s0370 Capsella rubella HOM05D006219 ORTHO05D007562 8.6e-111 404.8 439 52.6
AL3G14570 Arabidopsis lyrata HOM05D006219 ORTHO05D007562 2.5e-110 403.3 374 57.8
BraA01t04521Z Brassica rapa HOM05D006219 ORTHO05D007562 2.5e-110 403.3 431 52.9
vmacro20002 Vaccinium macrocarpon HOM05D006219 ORTHO05D007562 7.3e-110 401.7 331 65.9
Ah.06g191950 Amaranthus hybridus HOM05D006219 ORTHO05D007562 2.1e-109 400.2 437 49.9
BcaB04g21366 Brassica carinata HOM05D006219 ORTHO05D007562 2.1e-109 400.2 429 52.4
A01p40850 Brassica napus HOM05D006219 ORTHO05D007562 4.7e-109 399.1 432 52.8
BNapus_Darmor_BZH_scaffold_78p00860 Brassica napus HOM05D006219 ORTHO05D007562 4.7e-109 399.1 432 52.8
Sp3g03390 Schrenkiella parvula HOM05D006219 ORTHO05D007562 1.8e-108 397.1 436 51.1
Psat6g143080 Pisum sativum HOM05D006219 ORTHO05D007562 8.9e-108 394.8 327 61.2
CDE08G1514 Ceratophyllum demersum HOM05D006219 ORTHO05D007562 2.6e-107 393.3 375 56.5
Nn1g02711 Nelumbo nucifera HOM05D006219 ORTHO05D007562 2.2e-106 390.2 323 66.9
EL10Ac4g09057 Beta vulgaris HOM05D006219 ORTHO05D007562 3.3e-102 376.3 359 55.4
HPP92_025973 Vanilla planifolia HOM05D006219 ORTHO05D007562 1.1e-100 371.3 428 50.7
SGA_v2.0_scaffold210G42065 Striga asiatica HOM05D006219 ORTHO05D007562 4.9e-98 362.5 364 58.8
TPR.G10266 Trifolium pratense HOM05D006219 ORTHO05D007562 1.0e-95 354.8 429 50.3
AUR62004874 Chenopodium quinoa HOM05D006219 ORTHO05D007562 3.0e-95 353.2 331 56.2
Hma1.2p1_1227F.1_g268570 Hydrangea macrophylla HOM05D006219 ORTHO05D007562 3.1e-92 343.2 318 62.3
MBI18_g37358_MAGBIO Magnolia biondii HOM05D006219 ORTHO05D007562 3.5e-88 329.7 328 57.9
ATR0680G103 Amborella trichopoda HOM05D006219 ORTHO05D007562 2.5e-86 323.6 420 47.4
Os10g0445600 Oryza sativa ssp. japonica HOM05D006219 ORTHO05D007562 3.9e-79 299.7 393 45.0
Glyma.20G222200 Glycine max HOM05D006219 ORTHO05D007562 4.3e-78 296.2 238 66.8
Zm00001eb066000 Zea mays HOM05D006219 ORTHO05D007562 2.1e-77 293.9 372 46.2
Eucgr.H04253 Eucalyptus grandis HOM05D006219 ORTHO05D007562 1.4e-73 281.2 301 56.1
Ciclev10027647m.g Citrus clementina HOM05D006219 ORTHO05D007562 1.0e-71 275.0 203 75.4
MD04G1228600 Malus domestica HOM05D006219 ORTHO05D007562 5.1e-71 272.7 208 66.3
SEGI_10874 Sequoiadendron giganteum HOM05D006219 ORTHO05D007562 4.3e-70 269.6 370 45.7
MBI18_g32212_MAGBIO Magnolia biondii HOM05D006219 ORTHO05D007562 8.7e-63 245.4 456 43.9
Lalb_Chr18g0044051 Lupinus albus HOM05D006219 ORTHO05D007562 4.3e-62 243.0 231 55.8
Mapoly0001s0431 Marchantia polymorpha HOM05D006219 ORTHO05D007562 5.7e-54 216.1 337 38.6
AagrBONN_evm.TU.Sc2ySwM_117.503 Anthoceros agrestis HOM05D006219 ORTHO05D007562 8.2e-53 212.2 348 39.9
Pp3c18_4320 Physcomitrium patens HOM05D006219 ORTHO05D007562 5.3e-52 209.5 339 38.9
CBR_g29314 Chara braunii HOM05D006219 ORTHO05D007562 2.2e-45 187.6 384 35.2
AagrBONN_evm.TU.Sc2ySwM_228.3126 Anthoceros agrestis HOM05D006219 ORTHO05D007562 9.4e-25 119.0 283 32.9
Cre06.g308450 Chlamydomonas reinhardtii HOM05D006219 ORTHO05D007562 1.6e-24 118.2 311 34.1
SMO137G0122 Selaginella moellendorffii HOM05D006219 ORTHO05D007562 1.6e-19 101.7 166 37.3
Pp3c16_6440 Physcomitrium patens HOM05D006219 ORTHO05D007562 7.7e-19 99.4 166 36.1
Cpa.g.sc162.21 Carica papaya HOM05D000369 ORTHO05D007562 1.5e-17 95.1 89 57.3
Glyma.15G246700 Glycine max HOM05D001461 ORTHO05D005534 3.2e-17 94.0 70 67.1
MCO04G553 Micromonas commoda HOM05D006219 ORTHO05D007562 2.7e-16 90.9 304 29.6
Mapoly4350s0001 Marchantia polymorpha HOM05D006219 ORTHO05D007562 1.2e-14 85.5 146 35.6
PRCOL_00003529 Prasinoderma coloniale HOM05D006219 ORTHO05D007562 4.1e-12 77.0 370 24.9
TAR362G0073 Trochodendron aralioides HOM05D001652 ORTHO05D001768 1.2e-11 75.5 83 49.4


User provided reference genes

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