Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv06977 Davidia involucrata HOM05D007503 ORTHO05D009487 4.3e-33 144.1 72 100.0
Hma1.2p1_0123F.1_g057900 Hydrangea macrophylla HOM05D007503 ORTHO05D009487 1.1e-25 119.4 72 87.5
Actinidia06811 Actinidia chinensis HOM05D007503 ORTHO05D009487 3.3e-25 117.9 71 84.5
Rhsim01G0105600 Rhododendron simsii HOM05D007503 ORTHO05D009487 3.3e-25 117.9 71 83.1
HanXRQChr02g0039651 Helianthus annuus HOM05D007503 ORTHO05D009487 4.3e-25 117.5 68 80.9
vmacro20740 Vaccinium macrocarpon HOM05D007503 ORTHO05D009487 1.3e-24 115.9 71 84.5
GSVIVG01010020001 Vitis vinifera HOM05D007503 ORTHO05D009487 1.8e-23 112.1 72 79.2
Cc09_g03530 Coffea canephora HOM05D007503 ORTHO05D009487 2.4e-23 111.7 73 78.1
RcHm_v2.0_Chr3g0487701 Rosa chinensis HOM05D007503 ORTHO05D009487 2.6e-22 108.2 71 77.5
TWI56G0335 Tripterygium wilfordii HOM05D007503 ORTHO05D009487 1.3e-21 105.9 68 72.1
SalBow6G4878 Salvia bowleyana HOM05D007503 ORTHO05D009487 2.9e-21 104.8 74 75.7
DCAR_007994 Daucus carota HOM05D007503 ORTHO05D009487 3.8e-21 104.4 65 76.9
ECA232G1405 Erigeron canadensis HOM05D007503 ORTHO05D009487 3.8e-21 104.4 62 75.8
DCAR_023852 Daucus carota HOM05D007503 ORTHO05D009487 1.1e-20 102.8 65 75.4
QL02p056384 Quercus lobata HOM05D007503 ORTHO05D009487 1.4e-20 102.4 69 71.0
Nitab4.5_0001653g0060 Nicotiana tabacum HOM05D007503 ORTHO05D009487 2.5e-20 101.7 64 76.6
Nitab4.5_0011656g0020 Nicotiana tabacum HOM05D007503 ORTHO05D009487 2.5e-20 101.7 64 78.1
CiPaw.03G009100 Carya illinoinensis HOM05D007503 ORTHO05D009487 3.2e-20 101.3 64 76.6
Prupe.3G011500 Prunus persica HOM05D007503 ORTHO05D009487 3.2e-20 101.3 71 73.2
THA.LOC104815587 Tarenaya hassleriana HOM05D007503 ORTHO05D009487 3.2e-20 101.3 67 73.1
FvH4_1g27230 Fragaria vesca HOM05D007503 ORTHO05D009487 5.5e-20 100.5 69 71.0
FAN19G2707 Fragaria x ananassa HOM05D007503 ORTHO05D009487 5.5e-20 100.5 69 71.0
FAN23G0073 Fragaria x ananassa HOM05D007503 ORTHO05D009487 5.5e-20 100.5 69 71.0
MD17G1272500 Malus domestica HOM05D007503 ORTHO05D009487 7.1e-20 100.1 71 73.2
PSO729G0165 Papaver somniferum HOM05D007503 ORTHO05D009487 7.1e-20 100.1 66 74.2
Manes.01G240301 Manihot esculenta HOM05D007503 ORTHO05D009487 1.2e-19 99.4 72 68.1
Nitab4.5_0002233g0020 Nicotiana tabacum HOM05D007503 ORTHO05D009487 1.6e-19 99.0 74 71.6
Sc09g0004610 Simmondsia chinensis HOM05D007503 ORTHO05D009487 2.1e-19 98.6 65 72.3
FAN26G0784 Fragaria x ananassa HOM05D000757 ORTHO05D000622 2.7e-19 98.2 66 74.2
Nn1g09784 Nelumbo nucifera HOM05D007503 ORTHO05D009487 2.7e-19 98.2 66 71.2
THA.LOC104822606 Tarenaya hassleriana HOM05D007503 ORTHO05D009487 2.7e-19 98.2 67 70.1
Migut.F01879 Erythranthe guttata HOM05D007503 ORTHO05D009487 3.5e-19 97.8 56 87.5
Peaxi162Scf00253g00725 Petunia axillaris HOM05D007503 ORTHO05D009487 3.5e-19 97.8 71 71.8
Solyc03g058340.3 Solanum lycopersicum HOM05D007503 ORTHO05D009487 3.5e-19 97.8 62 79.0
Sopen03g015570 Solanum pennellii HOM05D007503 ORTHO05D009487 3.5e-19 97.8 62 79.0
CAN.G326.18 Capsicum annuum HOM05D007503 ORTHO05D009487 4.6e-19 97.4 71 70.4
Glyma.18G047300 Glycine max HOM05D007503 ORTHO05D009487 4.6e-19 97.4 62 72.6
Glyma.11G203700 Glycine max HOM05D007503 ORTHO05D009487 6.1e-19 97.1 62 72.6
Lalb_Chr20g0117211 Lupinus albus HOM05D007503 ORTHO05D009487 6.1e-19 97.1 60 76.7
Haze_14049 Corylus avellana HOM05D007503 ORTHO05D009487 7.9e-19 96.7 65 72.3
Haze_14060 Corylus avellana HOM05D007503 ORTHO05D009487 7.9e-19 96.7 65 72.3
Lj6g0027028 Lotus japonicus HOM05D007503 ORTHO05D009487 7.9e-19 96.7 62 72.6
Phvul.006G084000 Phaseolus vulgaris HOM05D007503 ORTHO05D009487 7.9e-19 96.7 65 69.2
BraA01t03971Z Brassica rapa HOM05D007503 ORTHO05D009487 1.0e-18 96.3 64 73.4
Gohir.A11G170200 Gossypium hirsutum HOM05D007503 ORTHO05D009487 1.0e-18 96.3 58 75.9
Gohir.D11G177200 Gossypium hirsutum HOM05D007503 ORTHO05D009487 1.0e-18 96.3 58 75.9
Gorai.007G189300 Gossypium raimondii HOM05D007503 ORTHO05D009487 1.0e-18 96.3 58 75.9
Hund06856 Selenicereus undatus HOM05D007503 ORTHO05D009487 2.3e-18 95.1 72 66.7
CANSAT80G2883 Cannabis sativa HOM05D007503 ORTHO05D009487 3.0e-18 94.7 68 70.6
MD09G1282700 Malus domestica HOM05D007503 ORTHO05D009487 3.0e-18 94.7 65 72.3
A01p39280 Brassica napus HOM05D007503 ORTHO05D009487 3.9e-18 94.4 64 71.9
C05p52900 Brassica napus HOM05D007503 ORTHO05D009487 3.9e-18 94.4 73 65.8
Eucgr.I00239 Eucalyptus grandis HOM05D007503 ORTHO05D009487 5.1e-18 94.0 70 71.4
Medtr3g063970 Medicago truncatula HOM05D007503 ORTHO05D009487 5.1e-18 94.0 63 71.4
BcaC09g48410 Brassica carinata HOM05D007503 ORTHO05D009487 6.7e-18 93.6 64 70.3
C01p50080 Brassica napus HOM05D007503 ORTHO05D009487 6.7e-18 93.6 64 70.3
BolC1t04962H Brassica oleracea HOM05D007503 ORTHO05D009487 6.7e-18 93.6 64 70.3
BolC5t33967H Brassica oleracea HOM05D007503 ORTHO05D009487 6.7e-18 93.6 67 68.7
AT3G14430 Arabidopsis thaliana HOM05D007503 ORTHO05D009487 8.7e-18 93.2 67 70.1
CARHR089340 Cardamine hirsuta HOM05D007503 ORTHO05D009487 8.7e-18 93.2 71 64.8
Potri.014G105250 Populus trichocarpa HOM05D007503 ORTHO05D009487 8.7e-18 93.2 64 70.3
Thecc.09G340100 Theobroma cacao HOM05D007503 ORTHO05D009487 8.7e-18 93.2 74 68.9
BcaB06g25385 Brassica carinata HOM05D007503 ORTHO05D009487 1.1e-17 92.8 67 68.7
A05p34950 Brassica napus HOM05D007503 ORTHO05D009487 1.1e-17 92.8 64 70.3
BraA05t22309Z Brassica rapa HOM05D007503 ORTHO05D009487 1.1e-17 92.8 64 70.3
unitig_0.g938 Utricularia gibba HOM05D001953 ORTHO05D001904 1.5e-17 92.4 67 70.1
BcaC05g29084 Brassica carinata HOM05D007503 ORTHO05D009487 3.3e-17 91.3 67 67.2
Duzib211G0566 Durio zibethinus HOM05D007503 ORTHO05D009487 3.3e-17 91.3 58 75.9
AL3G26810 Arabidopsis lyrata HOM05D007503 ORTHO05D009487 5.7e-17 90.5 67 68.7
Carub.0003s1415 Capsella rubella HOM05D007503 ORTHO05D009487 7.4e-17 90.1 67 65.7
Ciclev10013261m.g Citrus clementina HOM05D007503 ORTHO05D009487 7.4e-17 90.1 65 66.2
Sp3g12730 Schrenkiella parvula HOM05D007503 ORTHO05D009487 7.4e-17 90.1 67 65.7
CDE05G2177 Ceratophyllum demersum HOM05D007503 ORTHO05D009487 9.7e-17 89.7 60 70.0
Thhalv10021919m.g Eutrema salsugineum HOM05D007503 ORTHO05D009487 9.7e-17 89.7 64 68.8
COL.COLO4_13441 Corchorus olitorius HOM05D007503 ORTHO05D009487 1.3e-16 89.4 58 74.1
Zm00001eb175060 Zea mays HOM05D007503 ORTHO05D009487 3.7e-16 87.8 67 64.2
Sed0018329 Sechium edule HOM05D007503 ORTHO05D009487 4.8e-16 87.4 70 60.0
Aqoxy5G03063 Aquilegia oxysepala HOM05D007503 ORTHO05D009487 6.3e-16 87.0 62 72.6
Sabra14G0077600 Salix brachista HOM05D007503 ORTHO05D009487 6.3e-16 87.0 64 65.6
Zm00001eb036330 Zea mays HOM05D007503 ORTHO05D009487 6.3e-16 87.0 68 63.2
Aa31LG8G1690 Aethionema arabicum HOM05D007503 ORTHO05D009487 1.4e-15 85.9 67 65.7
Os08g0528601 Oryza sativa ssp. japonica HOM05D007503 ORTHO05D009487 1.4e-15 85.9 62 69.4
ClCG01G008330 Citrullus lanatus HOM05D007503 ORTHO05D009487 5.3e-15 84.0 66 65.2
MELO3C025073.2 Cucumis melo HOM05D007503 ORTHO05D009487 6.9e-15 83.6 51 74.5
CsaV3_5G020250 Cucumis sativus L. HOM05D007503 ORTHO05D009487 6.9e-15 83.6 51 74.5
Sabra02G0134700 Salix brachista HOM05D007503 ORTHO05D009487 9.0e-15 83.2 70 57.1
PGR119G1426 Punica granatum HOM05D007503 ORTHO05D009487 3.4e-14 81.3 65 64.6
Pp3c11_25150 Physcomitrium patens HOM05D007503 ORTHO05D009487 1.7e-13 79.0 50 78.0
Aa31LG10G1620 Aethionema arabicum HOM05D007503 ORTHO05D009487 1.4e-12 75.9 71 53.5
Lsat_1_v5_gn_9_48861 Lactuca sativa HOM05D007503 ORTHO05D009487 1.4e-12 75.9 50 78.0
Cpa.g.c46349 Carica papaya HOM05D007503 ORTHO05D009487 7.2e-12 73.6 67 56.7
Cpa.g.sc44.91 Carica papaya HOM05D007503 ORTHO05D009487 7.2e-12 73.6 67 56.7
Pp3c7_7140 Physcomitrium patens HOM05D007503 ORTHO05D009487 7.9e-11 70.1 50 70.0
HanXRQChr14g0445891 Helianthus annuus HOM05D007503 ORTHO05D009487 2.3e-10 68.6 48 70.8
CSS0042421 Camellia sinensis var. sinensis HOM05D007503 ORTHO05D009487 6.7e-10 67.0 46 82.6
TAR392G0002 Trochodendron aralioides HOM05D007503 ORTHO05D009487 8.2e-08 60.1 48 70.8
Mapoly0109s0063 Marchantia polymorpha HOM05D007503 ORTHO05D009487 1.1e-07 59.7 40 77.5
PGSC0003DMG400000976 Solanum tuberosum HOM05D007503 ORTHO05D009487 4.1e-07 57.8 39 76.9
BcaC02g09481 Brassica carinata HOM05D007503 ORTHO05D009487 5.3e-07 57.4 46 63.0
arahy.Tifrunner.gnm1.ann1.CKCH2H Arachis hypogaea HOM05D007503 ORTHO05D009487 1.2e-06 56.2 39 66.7
arahy.Tifrunner.gnm1.ann1.17W1X2 Arachis hypogaea HOM05D007503 ORTHO05D009487 2.0e-06 55.5 39 66.7
TPR.G29629 Trifolium pratense HOM05D007503 ORTHO05D009487 7.7e-06 53.5 39 69.2


User provided reference genes

Program Settings