Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv06965 Davidia involucrata HOM05D008071 ORTHO05D009954 5.3e-125 451.1 233 100.0
Dinv13279 Davidia involucrata HOM05D008071 ORTHO05D009954 7.9e-36 154.8 130 69.2
Nitab4.5_0006448g0040 Nicotiana tabacum HOM05D013183 ORTHO05D009954 1.7e-22 110.5 128 48.4
Nitab4.5_0000123g0160 Nicotiana tabacum HOM05D013183 ORTHO05D009954 2.2e-22 110.2 129 48.8
QL07p015274 Quercus lobata HOM05D008071 ORTHO05D009954 1.4e-21 107.5 106 48.1
Rhsim03G0040600 Rhododendron simsii HOM05D008071 ORTHO05D009954 8.0e-20 101.7 124 46.0
Eucgr.K01698 Eucalyptus grandis HOM05D008071 ORTHO05D009954 2.0e-18 97.1 123 48.8
THA.LOC104827706 Tarenaya hassleriana HOM05D008071 ORTHO05D009954 5.7e-18 95.5 125 41.6
Eucgr.K01697 Eucalyptus grandis HOM05D008071 ORTHO05D009954 7.4e-18 95.1 133 44.4
BcaC03g14931 Brassica carinata HOM05D008071 ORTHO05D009954 9.1e-16 88.2 122 41.0
BolC2t08535H Brassica oleracea HOM05D008071 ORTHO05D009954 9.1e-16 88.2 122 41.0
C02p24260 Brassica napus HOM05D008071 ORTHO05D009954 1.2e-15 87.8 122 41.0
BraA02t06549Z Brassica rapa HOM05D008071 ORTHO05D009954 1.2e-15 87.8 122 41.0
Thhalv10009029m.g Eutrema salsugineum HOM05D008071 ORTHO05D009954 1.6e-15 87.4 124 41.1
A02p14820 Brassica napus HOM05D008071 ORTHO05D009954 1.0e-14 84.7 122 40.2
BcaB05g24356 Brassica carinata HOM05D008071 ORTHO05D009954 2.2e-14 83.6 116 40.5
Dinv24295 Davidia involucrata HOM05D000054 ORTHO05D002398 2.2e-14 83.6 85 61.2
AL1G40040 Arabidopsis lyrata HOM05D008071 ORTHO05D009954 2.9e-14 83.2 130 37.7
Sp5g23220 Schrenkiella parvula HOM05D008071 ORTHO05D009954 2.9e-14 83.2 122 38.5
THA.LOC104827708 Tarenaya hassleriana HOM05D008071 ORTHO05D009954 3.8e-14 82.8 131 38.9
Aa31LG7G9180 Aethionema arabicum HOM05D008071 ORTHO05D009954 1.0e-11 74.7 123 38.2
DCAR_008209 Daucus carota HOM05D014896 ORTHO05D016270 1.8e-11 73.9 138 37.7
Carub.0001s2525 Capsella rubella HOM05D008071 ORTHO05D009954 3.0e-11 73.2 119 41.2
Nitab4.5_0000123g0140 Nicotiana tabacum HOM05D031502 ORTHO05D009954 8.8e-11 71.6 127 41.7
CARHR136500 Cardamine hirsuta HOM05D008071 ORTHO05D009954 1.2e-10 71.2 125 37.6
BcaC01g01683 Brassica carinata HOM05D008071 ORTHO05D009954 1.5e-10 70.9 112 35.7
BolC3t19602H Brassica oleracea HOM05D008071 ORTHO05D009954 1.5e-10 70.9 112 35.7
Carub.0001s2523 Capsella rubella HOM05D008071 ORTHO05D009954 1.5e-10 70.9 120 34.2
TWI53G1565 Tripterygium wilfordii HOM05D008071 ORTHO05D009954 1.5e-10 70.9 118 38.1
BcaC02g12899 Brassica carinata HOM05D008071 ORTHO05D009954 2.6e-10 70.1 130 36.2
A07p31290 Brassica napus HOM05D008071 ORTHO05D009954 4.4e-10 69.3 125 34.4
BraA07t30762Z Brassica rapa HOM05D008071 ORTHO05D009954 4.4e-10 69.3 125 34.4
PGSC0003DMG400026885 Solanum tuberosum HOM05D013183 ORTHO05D018130 4.4e-10 69.3 95 47.4
BraA08t34634Z Brassica rapa HOM05D008071 ORTHO05D009954 5.7e-10 68.9 112 34.8
CSS0018509 Camellia sinensis var. sinensis HOM05D000054 ORTHO05D002398 7.5e-10 68.6 85 50.6
CARHR026190 Cardamine hirsuta HOM05D008071 ORTHO05D009954 9.7e-10 68.2 125 34.4
Carub.0001s2524 Capsella rubella HOM05D008071 ORTHO05D009954 1.3e-09 67.8 130 30.0
DCAR_008215 Daucus carota HOM05D014896 ORTHO05D016270 1.3e-09 67.8 138 34.1
THA.LOC104809574 Tarenaya hassleriana HOM05D000054 ORTHO05D002398 1.3e-09 67.8 132 38.6
TWI14G1080 Tripterygium wilfordii HOM05D000054 ORTHO05D002398 1.3e-09 67.8 153 37.3
AT5G05020 Arabidopsis thaliana HOM05D008071 ORTHO05D009954 1.7e-09 67.4 119 31.9
CSS0049573 Camellia sinensis var. sinensis HOM05D000054 ORTHO05D002398 1.7e-09 67.4 86 50.0
DCAR_008212 Daucus carota HOM05D014896 ORTHO05D016270 2.2e-09 67.0 137 34.3
Lj5A253G31 Lonicera japonica HOM05D000054 ORTHO05D002398 2.8e-09 66.6 77 48.1
Solyc01g104050.4 Solanum lycopersicum HOM05D000054 ORTHO05D002398 3.7e-09 66.2 87 47.1
Sopen01g046460 Solanum pennellii HOM05D000054 ORTHO05D002398 3.7e-09 66.2 87 47.1
PGSC0003DMG400023814 Solanum tuberosum HOM05D000054 ORTHO05D002398 3.7e-09 66.2 87 47.1
Dinv19379 Davidia involucrata HOM05D000054 ORTHO05D002398 4.8e-09 65.9 86 48.8
Peaxi162Scf00011g00511 Petunia axillaris HOM05D000054 ORTHO05D002398 4.8e-09 65.9 77 48.1
CANSAT78G1840 Cannabis sativa HOM05D008071 ORTHO05D009954 6.3e-09 65.5 114 36.8
Sp1g22940 Schrenkiella parvula HOM05D008071 ORTHO05D009954 6.3e-09 65.5 126 31.7
ATR0006G003 Amborella trichopoda HOM05D008071 ORTHO05D009954 8.2e-09 65.1 123 35.0
AL1G22030 Arabidopsis lyrata HOM05D000054 ORTHO05D002398 8.2e-09 65.1 77 48.1
Carub.0006s3123 Capsella rubella HOM05D008071 ORTHO05D009954 8.2e-09 65.1 122 37.7
CARHR026210 Cardamine hirsuta HOM05D008071 ORTHO05D009954 8.2e-09 65.1 128 32.8
TWI59G0685 Tripterygium wilfordii HOM05D000054 ORTHO05D002398 8.2e-09 65.1 86 44.2
CAN.G798.11 Capsicum annuum HOM05D000054 ORTHO05D002398 1.1e-08 64.7 77 48.1
Gohir.A12G028000 Gossypium hirsutum HOM05D000054 ORTHO05D002398 1.4e-08 64.3 92 44.6
Nitab4.5_0010336g0010 Nicotiana tabacum HOM05D000054 ORTHO05D002398 1.4e-08 64.3 92 43.5
PGSC0003DMG400003787 Solanum tuberosum HOM05D013183 ORTHO05D018130 1.4e-08 64.3 96 42.7
PGSC0003DMG400003788 Solanum tuberosum HOM05D013183 ORTHO05D018130 1.4e-08 64.3 96 42.7
Aa31LG1G3860 Aethionema arabicum HOM05D000054 ORTHO05D002398 1.8e-08 63.9 76 47.4
MSTRG.5225 Avicennia marina HOM05D000054 ORTHO05D002398 1.8e-08 63.9 77 48.1
Nn5g28427 Nelumbo nucifera HOM05D000054 ORTHO05D002398 1.8e-08 63.9 112 42.0
Nitab4.5_0006448g0020 Nicotiana tabacum HOM05D031502 ORTHO05D009954 1.8e-08 63.9 127 38.6
SalBow6G0281 Salvia bowleyana HOM05D000054 ORTHO05D002398 1.8e-08 63.9 125 38.4
SGA_v2.0_scaffold92G28195 Striga asiatica HOM05D000054 ORTHO05D002398 1.8e-08 63.9 77 48.1
Migut.N01046 Erythranthe guttata HOM05D000054 ORTHO05D002398 2.4e-08 63.5 81 48.1
Gohir.D12G027600 Gossypium hirsutum HOM05D000054 ORTHO05D002398 2.4e-08 63.5 92 43.5
Gorai.008G028100 Gossypium raimondii HOM05D000054 ORTHO05D002398 2.4e-08 63.5 92 43.5
Sp1g09740 Schrenkiella parvula HOM05D000054 ORTHO05D002398 2.4e-08 63.5 76 46.1
TAR625G0138 Trochodendron aralioides HOM05D000054 ORTHO05D002398 2.4e-08 63.5 103 44.7
ATR0083G045 Amborella trichopoda HOM05D008071 ORTHO05D009954 3.1e-08 63.2 106 35.8
AT1G11050 Arabidopsis thaliana HOM05D000054 ORTHO05D002398 3.1e-08 63.2 77 46.8
A09p64820 Brassica napus HOM05D000054 ORTHO05D002398 3.1e-08 63.2 76 44.7
A04p31550 Brassica napus HOM05D008071 ORTHO05D009954 4.1e-08 62.8 124 34.7
C04p68980 Brassica napus HOM05D008071 ORTHO05D009954 4.1e-08 62.8 124 34.7
BraA04t18611Z Brassica rapa HOM05D008071 ORTHO05D009954 4.1e-08 62.8 124 34.7
Dinv24294 Davidia involucrata HOM05D000054 ORTHO05D002398 4.1e-08 62.8 86 46.5
Nitab4.5_0000816g0060 Nicotiana tabacum HOM05D000054 ORTHO05D002398 4.1e-08 62.8 77 46.8
BolC8t52376H Brassica oleracea HOM05D000054 ORTHO05D002398 5.3e-08 62.4 92 41.3
BraA09t41813Z Brassica rapa HOM05D000054 ORTHO05D002398 5.3e-08 62.4 76 44.7
Oeu036662.1 Olea europaea HOM05D000054 ORTHO05D002398 5.3e-08 62.4 94 44.7
A07p12520 Brassica napus HOM05D008071 ORTHO05D009954 7.0e-08 62.0 113 29.2
C03p73050 Brassica napus HOM05D008071 ORTHO05D009954 7.0e-08 62.0 112 33.0
C08p48370 Brassica napus HOM05D000054 ORTHO05D002398 7.0e-08 62.0 92 41.3
BolC4t28398H Brassica oleracea HOM05D008071 ORTHO05D009954 7.0e-08 62.0 124 34.7
PSO170G5916 Papaver somniferum HOM05D000054 ORTHO05D002398 9.1e-08 61.6 103 40.8
CAN.G798.9 Capsicum annuum HOM05D000054 ORTHO05D002398 1.2e-07 61.2 77 48.1
Thhalv10007041m.g Eutrema salsugineum HOM05D000054 ORTHO05D002398 1.2e-07 61.2 92 41.3
Nitab4.5_0006448g0010 Nicotiana tabacum HOM05D031502 ORTHO05D009954 1.2e-07 61.2 130 38.5
PSO017G5656 Papaver somniferum HOM05D000054 ORTHO05D002398 1.2e-07 61.2 103 40.8
Nn5g29148 Nelumbo nucifera HOM05D000054 ORTHO05D002398 2.0e-07 60.5 112 41.1
AL4G39460 Arabidopsis lyrata HOM05D008071 ORTHO05D009954 2.7e-07 60.1 153 34.0
Oeu027796.2 Olea europaea HOM05D000054 ORTHO05D002398 2.7e-07 60.1 91 42.9
Sed0000789 Sechium edule HOM05D000054 ORTHO05D002398 2.7e-07 60.1 92 40.2
Solyc09g072770.1 Solanum lycopersicum HOM05D013183 ORTHO05D018130 2.7e-07 60.1 90 46.7
AT2G41390 Arabidopsis thaliana HOM05D008071 ORTHO05D009954 3.5e-07 59.7 124 35.5
CARHR011240 Cardamine hirsuta HOM05D000054 ORTHO05D002398 3.5e-07 59.7 91 40.7
DCAR_008214 Daucus carota HOM05D014896 ORTHO05D016270 4.5e-07 59.3 134 30.6
Duzib248G0124 Durio zibethinus HOM05D000054 ORTHO05D002398 4.5e-07 59.3 92 42.4
Actinidia26153 Actinidia chinensis HOM05D000054 ORTHO05D002398 7.7e-07 58.5 91 44.0
AT2G41400 Arabidopsis thaliana HOM05D008071 ORTHO05D009954 7.7e-07 58.5 118 34.7
Cfa005505 Carpinus fangiana HOM05D000054 ORTHO05D002398 7.7e-07 58.5 141 34.8
Sp2g26770 Schrenkiella parvula HOM05D008071 ORTHO05D009954 7.7e-07 58.5 128 34.4
Cpa.g.sc1872.1 Carica papaya HOM05D000054 ORTHO05D002398 1.0e-06 58.2 91 41.8
Cc02_g22660 Coffea canephora HOM05D000054 ORTHO05D002398 1.0e-06 58.2 86 43.0
DCAR_001824 Daucus carota HOM05D000054 ORTHO05D002398 1.0e-06 58.2 92 40.2
Hma1.2p1_0217F.1_g092180 Hydrangea macrophylla HOM05D000054 ORTHO05D002398 1.0e-06 58.2 153 35.9
RcHm_v2.0_Chr4g0399551 Rosa chinensis HOM05D000013 ORTHO05D000011 1.0e-06 58.2 105 38.1
Sopen09g028540 Solanum pennellii HOM05D013183 ORTHO05D018130 1.0e-06 58.2 90 45.6
Thecc.02G088400 Theobroma cacao HOM05D000054 ORTHO05D002398 1.0e-06 58.2 92 41.3
BolC3t19605H Brassica oleracea HOM05D008071 ORTHO05D009954 1.3e-06 57.8 122 31.1
CiPaw.06G146400 Carya illinoinensis HOM05D000054 ORTHO05D002398 1.3e-06 57.8 92 40.2
DCAR_008211 Daucus carota HOM05D014896 ORTHO05D016270 1.7e-06 57.4 91 35.2
Duzib132G0471 Durio zibethinus HOM05D000054 ORTHO05D002398 1.7e-06 57.4 77 45.5
Sed0005251 Sechium edule HOM05D000054 ORTHO05D002398 1.7e-06 57.4 76 43.4
MSTRG.16512 Avicennia marina HOM05D000054 ORTHO05D002398 2.2e-06 57.0 123 38.2
Cc02_g22650 Coffea canephora HOM05D000054 ORTHO05D002398 2.2e-06 57.0 91 44.0
DCAR_008213 Daucus carota HOM05D014896 ORTHO05D016270 2.2e-06 57.0 91 37.4
C03p73100 Brassica napus HOM05D008071 ORTHO05D009954 2.9e-06 56.6 122 31.1
FvH4_5g29100 Fragaria vesca HOM05D000054 ORTHO05D002398 2.9e-06 56.6 78 41.0
FAN13G2271 Fragaria x ananassa HOM05D000054 ORTHO05D002398 2.9e-06 56.6 78 41.0
FAN18G0392 Fragaria x ananassa HOM05D000054 ORTHO05D002398 2.9e-06 56.6 78 41.0
Carub.0001s1061 Capsella rubella HOM05D000054 ORTHO05D002398 3.8e-06 56.2 77 40.3
Haze_01736 Corylus avellana HOM05D000054 ORTHO05D002398 3.8e-06 56.2 77 42.9
DCAR_006699 Daucus carota HOM05D000054 ORTHO05D002398 3.8e-06 56.2 92 41.3
Potri.004G084900 Populus trichocarpa HOM05D000054 ORTHO05D002398 5.0e-06 55.8 92 38.0
Sc08g0005040 Simmondsia chinensis HOM05D000054 ORTHO05D002398 5.0e-06 55.8 77 44.2
vmacro19884 Vaccinium macrocarpon HOM05D000054 ORTHO05D002398 5.0e-06 55.8 90 41.1
MELO3C019461.2 Cucumis melo HOM05D000054 ORTHO05D002398 6.5e-06 55.5 76 40.8
CsaV3_3G019140 Cucumis sativus L. HOM05D000054 ORTHO05D002398 6.5e-06 55.5 76 40.8
Migut.B00821 Erythranthe guttata HOM05D000054 ORTHO05D002398 6.5e-06 55.5 103 39.8
Ah.03g137250 Amaranthus hybridus HOM05D000054 ORTHO05D002398 8.5e-06 55.1 77 42.9
ClCG05G009600 Citrullus lanatus HOM05D000054 ORTHO05D002398 8.5e-06 55.1 76 40.8
FAN04G1399 Fragaria x ananassa HOM05D000054 ORTHO05D002398 8.5e-06 55.1 78 39.7
FAN08G3330 Fragaria x ananassa HOM05D000054 ORTHO05D002398 8.5e-06 55.1 78 39.7
FAN11G3838 Fragaria x ananassa HOM05D000054 ORTHO05D002398 8.5e-06 55.1 106 35.8
Prupe.1G571200 Prunus persica HOM05D000054 ORTHO05D002398 8.5e-06 55.1 77 42.9


User provided reference genes

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