Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv06937 Davidia involucrata HOM05D004039 ORTHO05D004573 1.3e-126 456.4 236 100.0
Hma1.2p1_0738F.1_g210940 Hydrangea macrophylla HOM05D004039 ORTHO05D004573 5.7e-42 175.3 178 60.7
Oeu010264.1 Olea europaea HOM05D004039 ORTHO05D004573 2.9e-38 162.9 169 56.2
Haze_12527 Corylus avellana HOM05D004039 ORTHO05D004573 1.1e-37 161.0 166 57.2
Manes.08G099400 Manihot esculenta HOM05D004039 ORTHO05D004573 1.1e-37 161.0 165 57.6
CSS0018669 Camellia sinensis var. sinensis HOM05D004039 ORTHO05D004573 1.5e-37 160.6 186 60.8
Cfa009471 Carpinus fangiana HOM05D004039 ORTHO05D004573 5.6e-37 158.7 169 57.4
TWI75G0895 Tripterygium wilfordii HOM05D004039 ORTHO05D004573 5.6e-37 158.7 168 55.4
CiPaw.06G111200 Carya illinoinensis HOM05D004039 ORTHO05D004573 6.1e-36 155.2 182 58.2
Atru.chr12.1473 Acer truncatum HOM05D004039 ORTHO05D004573 6.8e-35 151.8 171 56.7
Eucgr.B03568 Eucalyptus grandis HOM05D004039 ORTHO05D004573 1.2e-34 151.0 173 56.1
QL03p048351 Quercus lobata HOM05D004039 ORTHO05D004573 2.0e-34 150.2 172 53.5
Ciclev10030001m.g Citrus clementina HOM05D004039 ORTHO05D004573 2.6e-34 149.8 181 54.1
MBI11_g23197_MAGBIO Magnolia biondii HOM05D004039 ORTHO05D004573 3.4e-34 149.4 173 52.6
Potri.003G160300 Populus trichocarpa HOM05D004039 ORTHO05D004573 5.7e-34 148.7 173 52.0
RcHm_v2.0_Chr4g0428421 Rosa chinensis HOM05D004039 ORTHO05D004573 1.7e-33 147.1 176 52.3
MD13G1134000 Malus domestica HOM05D004039 ORTHO05D004573 2.2e-33 146.7 175 52.0
Prupe.1G211600 Prunus persica HOM05D004039 ORTHO05D004573 4.9e-33 145.6 177 52.5
HanXRQChr10g0319941 Helianthus annuus HOM05D004039 ORTHO05D004573 6.4e-33 145.2 173 54.3
MD16G1144600 Malus domestica HOM05D004039 ORTHO05D004573 1.1e-32 144.4 178 51.7
Thhalv10005412m.g Eutrema salsugineum HOM05D004039 ORTHO05D004573 1.8e-32 143.7 165 53.3
Cpa.g.sc686.1 Carica papaya HOM05D004039 ORTHO05D004573 3.2e-32 142.9 170 54.7
CiPaw.05G098500 Carya illinoinensis HOM05D004039 ORTHO05D004573 3.2e-32 142.9 172 54.1
Cc02_g30640 Coffea canephora HOM05D004039 ORTHO05D004573 3.2e-32 142.9 196 48.5
THA.LOC104801433 Tarenaya hassleriana HOM05D004039 ORTHO05D004573 4.1e-32 142.5 170 52.4
FvH4_4g22190 Fragaria vesca HOM05D004039 ORTHO05D004573 2.0e-31 140.2 165 50.9
FAN07G2708 Fragaria x ananassa HOM05D004039 ORTHO05D004573 2.0e-31 140.2 165 52.1
BcaB04g19545 Brassica carinata HOM05D004039 ORTHO05D004573 2.7e-31 139.8 169 48.5
FAN17G1354 Fragaria x ananassa HOM05D004039 ORTHO05D004573 2.7e-31 139.8 165 52.1
PGR102G1502 Punica granatum HOM05D004039 ORTHO05D004573 4.6e-31 139.0 170 54.1
GSVIVG01032947001 Vitis vinifera HOM05D004039 ORTHO05D004573 4.6e-31 139.0 172 52.3
BcaC04g23799 Brassica carinata HOM05D004039 ORTHO05D004573 5.9e-31 138.7 162 50.0
Aa31LG3G14220 Aethionema arabicum HOM05D004039 ORTHO05D004573 7.8e-31 138.3 165 50.3
Sabra03G0116500 Salix brachista HOM05D004039 ORTHO05D004573 1.3e-30 137.5 177 50.8
THA.LOC104827510 Tarenaya hassleriana HOM05D004039 ORTHO05D004573 2.3e-30 136.7 172 51.7
Rhsim12G0091100 Rhododendron simsii HOM05D004039 ORTHO05D004573 3.0e-30 136.3 190 51.1
A02p37190 Brassica napus HOM05D004039 ORTHO05D004573 3.9e-30 136.0 165 49.1
COL.COLO4_07108 Corchorus olitorius HOM05D004039 ORTHO05D004573 5.0e-30 135.6 160 54.4
BolC9t53384H Brassica oleracea HOM05D004039 ORTHO05D004573 6.6e-30 135.2 162 48.8
BraA02t08705Z Brassica rapa HOM05D004039 ORTHO05D004573 8.6e-30 134.8 165 49.1
Sopen09g034240 Solanum pennellii HOM05D004039 ORTHO05D004573 1.9e-29 133.7 180 47.2
AT5G47920 Arabidopsis thaliana HOM05D004039 ORTHO05D004573 2.5e-29 133.3 174 47.1
BcaB07g29998 Brassica carinata HOM05D004039 ORTHO05D004573 2.5e-29 133.3 170 50.0
BraA09t36066Z Brassica rapa HOM05D004039 ORTHO05D004573 2.5e-29 133.3 149 51.0
Carub.0008s0748 Capsella rubella HOM05D004039 ORTHO05D004573 4.3e-29 132.5 177 46.9
DCAR_031611 Daucus carota HOM05D004039 ORTHO05D004573 5.6e-29 132.1 165 53.3
AL8G19920 Arabidopsis lyrata HOM05D004039 ORTHO05D004573 2.1e-28 130.2 175 46.9
BcaC03g17621 Brassica carinata HOM05D004039 ORTHO05D004573 2.1e-28 130.2 165 47.9
C02p56210 Brassica napus HOM05D004039 ORTHO05D004573 2.1e-28 130.2 165 47.9
BolC2t11677H Brassica oleracea HOM05D004039 ORTHO05D004573 2.1e-28 130.2 165 47.9
CARHR291780 Cardamine hirsuta HOM05D004039 ORTHO05D004573 2.1e-28 130.2 170 47.1
Sc11g0000030 Simmondsia chinensis HOM05D004039 ORTHO05D004573 2.1e-28 130.2 177 51.4
HPP92_025084 Vanilla planifolia HOM05D004039 ORTHO05D004573 2.1e-28 130.2 175 48.0
Nitab4.5_0019080g0010 Nicotiana tabacum HOM05D004039 ORTHO05D004573 4.7e-28 129.0 178 47.2
Solyc09g091270.3 Solanum lycopersicum HOM05D004039 ORTHO05D004573 4.7e-28 129.0 154 51.9
MELO3C026747.2 Cucumis melo HOM05D004039 ORTHO05D004573 6.2e-28 128.6 175 49.1
ATR0582G327 Amborella trichopoda HOM05D004039 ORTHO05D004573 8.0e-28 128.3 162 48.8
Phvul.001G098500 Phaseolus vulgaris HOM05D004039 ORTHO05D004573 8.0e-28 128.3 185 47.0
PGSC0003DMG400011591 Solanum tuberosum HOM05D004039 ORTHO05D004573 8.0e-28 128.3 186 46.2
CAN.G1588.13 Capsicum annuum HOM05D004039 ORTHO05D004573 1.4e-27 127.5 187 46.0
AUR62031493 Chenopodium quinoa HOM05D004039 ORTHO05D004573 1.4e-27 127.5 187 45.5
C09p04550 Brassica napus HOM05D004039 ORTHO05D004573 1.8e-27 127.1 162 46.9
ClCG10G013010 Citrullus lanatus HOM05D004039 ORTHO05D004573 4.0e-27 125.9 171 48.0
TAR374G0420 Trochodendron aralioides HOM05D004039 ORTHO05D004573 6.8e-27 125.2 154 54.5
Duzib205G0448 Durio zibethinus HOM05D001017 ORTHO05D001025 8.9e-27 124.8 158 50.6
EL10Ac2g04246 Beta vulgaris HOM05D004039 ORTHO05D004573 1.2e-26 124.4 190 42.1
Lalb_Chr24g0402991 Lupinus albus HOM05D004039 ORTHO05D004573 1.2e-26 124.4 190 41.6
PGR042G1501 Punica granatum HOM05D004039 ORTHO05D004573 1.5e-26 124.0 206 39.8
VMungo1302G0001 Vigna mungo HOM05D004039 ORTHO05D004573 1.5e-26 124.0 185 44.3
A09p04290 Brassica napus HOM05D004039 ORTHO05D004573 2.6e-26 123.2 155 46.5
Cpa.g.sc70.36 Carica papaya HOM05D004039 ORTHO05D004573 3.4e-26 122.9 161 49.1
Thecc.04G052000 Theobroma cacao HOM05D004039 ORTHO05D004573 3.4e-26 122.9 188 44.1
Ah.16g104320 Amaranthus hybridus HOM05D004039 ORTHO05D004573 7.5e-26 121.7 189 41.8
Peaxi162Scf00047g00153 Petunia axillaris HOM05D004039 ORTHO05D004573 7.5e-26 121.7 158 50.0
Gorai.006G002900 Gossypium raimondii HOM05D004039 ORTHO05D004573 9.8e-26 121.3 158 55.1
AUR62012365 Chenopodium quinoa HOM05D004039 ORTHO05D004573 1.3e-25 120.9 187 43.9
Lj1g0002386 Lotus japonicus HOM05D004039 ORTHO05D004573 1.3e-25 120.9 187 46.0
Sabra01G0049400 Salix brachista HOM05D004039 ORTHO05D004573 1.3e-25 120.9 160 50.6
Gohir.A09G002600 Gossypium hirsutum HOM05D004039 ORTHO05D004573 1.7e-25 120.6 158 53.8
Gohir.D09G002400 Gossypium hirsutum HOM05D004039 ORTHO05D004573 1.7e-25 120.6 158 55.1
COL.COLO4_13404 Corchorus olitorius HOM05D004039 ORTHO05D004573 2.2e-25 120.2 187 43.3
Glyma.19G106500 Glycine max HOM05D004039 ORTHO05D004573 2.2e-25 120.2 190 42.6
Gohir.D03G099900 Gossypium hirsutum HOM05D004039 ORTHO05D004573 2.2e-25 120.2 163 49.7
Gorai.003G105000 Gossypium raimondii HOM05D004039 ORTHO05D004573 2.2e-25 120.2 163 49.7
Lalb_Chr14g0364131 Lupinus albus HOM05D004039 ORTHO05D004573 2.2e-25 120.2 186 43.0
Sed0004494 Sechium edule HOM05D004039 ORTHO05D004573 3.7e-25 119.4 174 46.6
CANSAT64G1067 Cannabis sativa HOM05D004039 ORTHO05D004573 4.9e-25 119.0 192 44.3
Thecc.01G239800 Theobroma cacao HOM05D004039 ORTHO05D004573 4.9e-25 119.0 159 48.4
Gohir.A03G073400 Gossypium hirsutum HOM05D004039 ORTHO05D004573 6.4e-25 118.6 163 49.1
Ca_08235_v3 Cicer arietinum L. HOM05D004039 ORTHO05D004573 8.3e-25 118.2 192 43.2
ECA248G3450 Erigeron canadensis HOM05D000009 ORTHO05D000008 1.1e-24 117.9 80 75.0
Glyma.16G045200 Glycine max HOM05D004039 ORTHO05D004573 2.4e-24 116.7 199 41.7
Gohir.A12G141800 Gossypium hirsutum HOM05D004039 ORTHO05D004573 4.1e-24 115.9 193 40.9
Manes.11G073200 Manihot esculenta HOM05D004039 ORTHO05D004573 4.1e-24 115.9 192 42.7
QL02p068241 Quercus lobata HOM05D004039 ORTHO05D004573 4.1e-24 115.9 184 43.5
Sp2g18420 Schrenkiella parvula HOM05D004039 ORTHO05D004573 7.0e-24 115.2 153 46.4
Psat3g089920 Pisum sativum HOM05D004039 ORTHO05D004573 9.2e-24 114.8 185 43.8
Potri.014G140000 Populus trichocarpa HOM05D004039 ORTHO05D004573 9.2e-24 114.8 192 42.7
Haze_14987 Corylus avellana HOM05D004039 ORTHO05D004573 1.2e-23 114.4 191 42.4
Duzib187G1305 Durio zibethinus HOM05D004039 ORTHO05D004573 3.5e-23 112.8 198 43.4
Manes.04G096800 Manihot esculenta HOM05D004039 ORTHO05D004573 3.5e-23 112.8 181 40.9
Sabra14G0105500 Salix brachista HOM05D000032 ORTHO05D009383 4.6e-23 112.5 190 42.1
Gohir.D12G146700 Gossypium hirsutum HOM05D004039 ORTHO05D004573 6.0e-23 112.1 193 43.0
TPR.G31659 Trifolium pratense HOM05D004039 ORTHO05D004573 6.0e-23 112.1 192 42.7
Migut.K01132 Erythranthe guttata HOM05D004039 ORTHO05D004573 7.8e-23 111.7 190 42.6
Nitab4.5_0002182g0030 Nicotiana tabacum HOM05D004039 ORTHO05D004573 7.8e-23 111.7 71 77.5
BcaC04g24246 Brassica carinata HOM05D004039 ORTHO05D004573 1.0e-22 111.3 168 42.3
Gorai.008G157900 Gossypium raimondii HOM05D004039 ORTHO05D004573 1.3e-22 110.9 197 42.1
BcaC06g30835 Brassica carinata HOM05D004039 ORTHO05D004573 3.0e-22 109.8 160 43.1
BraA10t44513Z Brassica rapa HOM05D004039 ORTHO05D004573 5.0e-22 109.0 169 45.0
AT5G13880 Arabidopsis thaliana HOM05D004039 ORTHO05D004573 6.6e-22 108.6 176 41.5
Eucgr.I01568 Eucalyptus grandis HOM05D004039 ORTHO05D004573 8.6e-22 108.2 161 44.7
Sp6g30120 Schrenkiella parvula HOM05D004039 ORTHO05D004573 8.6e-22 108.2 174 44.3
Thhalv10014767m.g Eutrema salsugineum HOM05D004039 ORTHO05D004573 1.5e-21 107.5 179 43.0
PSO017G5432 Papaver somniferum HOM05D004039 ORTHO05D004573 1.9e-21 107.1 148 49.3
Psat3g090520 Pisum sativum HOM05D004039 ORTHO05D004573 1.9e-21 107.1 177 40.1
Carub.0006s1207 Capsella rubella HOM05D004039 ORTHO05D004573 2.5e-21 106.7 176 43.8
Atru.chr6.2731 Acer truncatum HOM05D004039 ORTHO05D004573 3.3e-21 106.3 200 42.0
BcaC04g19071 Brassica carinata HOM05D004039 ORTHO05D004573 3.3e-21 106.3 171 42.7
C09p63220 Brassica napus HOM05D004039 ORTHO05D004573 3.3e-21 106.3 171 42.7
BolC9t59158H Brassica oleracea HOM05D004039 ORTHO05D004573 3.3e-21 106.3 171 42.7
BolC7t44401H Brassica oleracea HOM05D004039 ORTHO05D004573 4.3e-21 105.9 170 42.4
Ciclev10016691m.g Citrus clementina HOM05D004039 ORTHO05D004573 5.6e-21 105.5 196 38.3
CDE05G3127 Ceratophyllum demersum HOM05D004039 ORTHO05D004573 9.5e-21 104.8 175 41.7
Medtr7g084740 Medicago truncatula HOM05D004039 ORTHO05D004573 9.5e-21 104.8 197 38.1
Medtr7g084720 Medicago truncatula HOM05D004039 ORTHO05D004573 1.2e-20 104.4 167 40.7
A06p39450 Brassica napus HOM05D004039 ORTHO05D004573 1.6e-20 104.0 164 41.5
Cfa007136 Carpinus fangiana HOM05D004039 ORTHO05D004573 2.1e-20 103.6 187 42.2
Lalb_Chr21g0317001 Lupinus albus HOM05D004039 ORTHO05D004573 2.1e-20 103.6 194 35.6
PSO478G3045 Papaver somniferum HOM05D004039 ORTHO05D004573 2.1e-20 103.6 148 48.6
BraA06t26860Z Brassica rapa HOM05D004039 ORTHO05D004573 2.8e-20 103.2 173 39.9
C03p07240 Brassica napus HOM05D004039 ORTHO05D004573 3.6e-20 102.8 156 41.7
BolC3t13225H Brassica oleracea HOM05D004039 ORTHO05D004573 3.6e-20 102.8 156 41.7
MD17G1003900 Malus domestica HOM05D004039 ORTHO05D004573 6.2e-20 102.1 215 36.3
A10p24480 Brassica napus HOM05D004039 ORTHO05D004573 8.1e-20 101.7 173 43.9
Nn3g16207 Nelumbo nucifera HOM05D004039 ORTHO05D004573 8.1e-20 101.7 172 40.7
C07p38820 Brassica napus HOM05D004039 ORTHO05D004573 1.1e-19 101.3 164 40.9
Psat3g090560 Pisum sativum HOM05D004039 ORTHO05D004573 1.1e-19 101.3 222 36.0
MBI07_g42011_MAGBIO Magnolia biondii HOM05D004039 ORTHO05D004573 1.4e-19 100.9 204 36.8
SHI11395 Sapria himalayana HOM05D004039 ORTHO05D004573 1.4e-19 100.9 182 37.9
AL6G24520 Arabidopsis lyrata HOM05D004039 ORTHO05D004573 1.8e-19 100.5 181 42.5
TWI12G1264 Tripterygium wilfordii HOM05D004039 ORTHO05D004573 1.8e-19 100.5 167 41.9
A03p06250 Brassica napus HOM05D004039 ORTHO05D004573 2.3e-19 100.1 154 41.6
BraA03t09957Z Brassica rapa HOM05D004039 ORTHO05D004573 2.3e-19 100.1 154 41.6
CARHR199550 Cardamine hirsuta HOM05D004039 ORTHO05D004573 1.2e-18 97.8 157 45.2
BcaB01g05331 Brassica carinata HOM05D004039 ORTHO05D004573 1.5e-18 97.4 156 42.9
Eucgr.G01911 Eucalyptus grandis HOM05D004039 ORTHO05D004573 1.5e-18 97.4 179 37.4
Glyma.02G068200 Glycine max HOM05D004039 ORTHO05D004573 2.0e-18 97.1 230 32.6
Medtr7g084710 Medicago truncatula HOM05D004039 ORTHO05D004573 2.0e-18 97.1 189 38.1
Phvul.004G067800 Phaseolus vulgaris HOM05D004039 ORTHO05D004573 2.6e-18 96.7 203 35.5
CsaV3_3G032870 Cucumis sativus L. HOM05D004039 ORTHO05D004573 3.4e-18 96.3 166 41.6
GSVIVG01001118001 Vitis vinifera HOM05D004039 ORTHO05D011171 3.4e-18 96.3 71 69.0
Zm00001eb085640 Zea mays HOM05D004039 ORTHO05D004573 4.9e-17 92.4 195 37.9
CDE06G1383 Ceratophyllum demersum HOM05D004039 ORTHO05D004573 2.1e-15 87.0 162 35.2
CDE02G1703 Ceratophyllum demersum HOM05D004039 ORTHO05D004573 1.7e-14 84.0 161 32.9
Os04g0382400 Oryza sativa ssp. japonica HOM05D004039 ORTHO05D004573 1.7e-14 84.0 180 32.2
Dinv10867 Davidia involucrata HOM05D021951 ORTHO05D004573 2.3e-14 83.6 40 85.0
Dinv11878 Davidia involucrata HOM05D021951 ORTHO05D004573 2.3e-14 83.6 40 85.0
Dinv24655 Davidia involucrata HOM05D021951 ORTHO05D004573 2.3e-14 83.6 40 85.0
Dinv26548 Davidia involucrata HOM05D021951 ORTHO05D004573 2.3e-14 83.6 40 85.0
Dinv26549 Davidia involucrata HOM05D021951 ORTHO05D004573 2.3e-14 83.6 40 85.0
CiPaw.14G093600 Carya illinoinensis HOM05D004039 ORTHO05D004573 5.1e-14 82.4 194 35.1
Aqoxy3G01771 Aquilegia oxysepala HOM05D004039 ORTHO05D004573 6.6e-14 82.0 73 61.6
Prupe.3G315300 Prunus persica HOM05D004039 ORTHO05D004573 6.6e-14 82.0 217 32.3
Actinidia33989 Actinidia chinensis HOM05D004548 ORTHO05D005402 8.6e-14 81.6 197 42.1
SGA_v2.0_scaffold258G45761 Striga asiatica HOM05D004039 ORTHO05D004573 1.1e-13 81.3 149 40.9
Rhsim08G0037500 Rhododendron simsii HOM05D004039 ORTHO05D000739 1.9e-13 80.5 182 37.4
Zm00001eb181000 Zea mays HOM05D004039 ORTHO05D004573 1.1e-11 74.7 180 31.7
CsaV3_3G020070 Cucumis sativus L. HOM05D004039 ORTHO05D004573 2.3e-11 73.6 162 34.0
TPR.G31663 Trifolium pratense HOM05D004039 ORTHO05D004573 1.2e-10 71.2 71 53.5
MELO3C014757.2 Cucumis melo HOM05D004039 ORTHO05D004573 1.5e-10 70.9 162 32.7
PGR119G1683 Punica granatum HOM05D004039 ORTHO05D004573 7.6e-10 68.6 192 34.4
ClCG05G012460 Citrullus lanatus HOM05D004039 ORTHO05D004573 8.4e-09 65.1 159 33.3
Zm00001eb318100 Zea mays HOM05D015480 ORTHO05D019326 1.9e-08 63.9 185 27.0
Sed0011010 Sechium edule HOM05D004039 ORTHO05D004573 2.4e-08 63.5 165 32.1
SEGI_35194 Sequoiadendron giganteum HOM05D004039 ORTHO05D004573 5.4e-08 62.4 160 35.0
Oeu035281.1 Olea europaea HOM05D004039 ORTHO05D004573 9.2e-08 61.6 156 32.7
Os08g0539200 Oryza sativa ssp. japonica HOM05D015480 ORTHO05D019326 9.2e-08 61.6 148 30.4
Os09g0511300 Oryza sativa ssp. japonica HOM05D015480 ORTHO05D019326 2.1e-07 60.5 174 27.6
FAN12G1550 Fragaria x ananassa HOM05D004039 ORTHO05D004573 1.0e-06 58.2 98 41.8
Os09g0511200 Oryza sativa ssp. japonica HOM05D015480 ORTHO05D019326 1.3e-06 57.8 192 25.0
Zm00001eb359900 Zea mays HOM05D015480 ORTHO05D019326 3.0e-06 56.6 185 25.4


User provided reference genes

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