Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv06927 Davidia involucrata HOM05D004305 ORTHO05D005159 4.4e-213 744.6 442 100.0
CSS0026993 Camellia sinensis var. sinensis HOM05D004305 ORTHO05D005159 6.5e-55 219.2 383 42.3
Rhsim02G0163100 Rhododendron simsii HOM05D004305 ORTHO05D005159 1.4e-46 191.4 412 37.6
Actinidia13459 Actinidia chinensis HOM05D004305 ORTHO05D005159 5.5e-46 189.5 396 36.9
Lj1P1160T59 Lonicera japonica HOM05D004305 ORTHO05D005159 4.7e-45 186.4 368 39.9
GSVIVG01021709001 Vitis vinifera HOM05D004305 ORTHO05D005159 1.5e-43 181.4 370 38.4
MSTRG.7546 Avicennia marina HOM05D004305 ORTHO05D005159 1.3e-39 168.3 375 36.5
Ciclev10015182m.g Citrus clementina HOM05D004305 ORTHO05D005159 2.2e-39 167.5 370 35.4
MSTRG.16299 Avicennia marina HOM05D004305 ORTHO05D005159 9.4e-38 162.2 380 34.5
Oeu040075.1 Olea europaea HOM05D004305 ORTHO05D005159 3.6e-37 160.2 371 36.4
Oeu041117.1 Olea europaea HOM05D004305 ORTHO05D005159 4.7e-37 159.8 372 38.2
Potri.001G464300 Populus trichocarpa HOM05D004305 ORTHO05D005159 2.8e-34 150.6 372 36.3
CANSAT35G0942 Cannabis sativa HOM05D004305 ORTHO05D005159 6.3e-34 149.4 379 36.4
Manes.14G124700 Manihot esculenta HOM05D004305 ORTHO05D005159 3.1e-33 147.1 380 37.1
Cpa.g.c43226 Carica papaya HOM05D004305 ORTHO05D005159 7.0e-33 146.0 373 36.7
Migut.M01906 Erythranthe guttata HOM05D004305 ORTHO05D005159 7.0e-33 146.0 376 37.0
Sabra11G0141400 Salix brachista HOM05D004305 ORTHO05D005159 7.0e-33 146.0 379 35.6
Cc09_g07570 Coffea canephora HOM05D004305 ORTHO05D005159 1.6e-32 144.8 368 32.6
TWI15G0126 Tripterygium wilfordii HOM05D004305 ORTHO05D005159 1.6e-32 144.8 365 34.8
Oeu060316.1 Olea europaea HOM05D004305 ORTHO05D005159 5.9e-32 142.9 375 34.4
Prupe.4G095400 Prunus persica HOM05D004305 ORTHO05D005159 1.7e-31 141.4 278 40.3
Sabra16G0313900 Salix brachista HOM05D004305 ORTHO05D005159 2.2e-31 141.0 370 34.6
Sabra16G0315300 Salix brachista HOM05D004305 ORTHO05D005159 1.9e-30 137.9 379 34.6
Manes.06G058700 Manihot esculenta HOM05D004305 ORTHO05D005159 3.2e-30 137.1 378 35.4
Actinidia31373 Actinidia chinensis HOM05D004305 ORTHO05D005159 4.2e-30 136.7 206 48.5
MD10G1248100 Malus domestica HOM05D004305 ORTHO05D005159 1.6e-29 134.8 238 41.6
Potri.011G162400 Populus trichocarpa HOM05D004305 ORTHO05D005159 2.1e-29 134.4 382 33.5
RcHm_v2.0_Chr5g0017411 Rosa chinensis HOM05D004305 ORTHO05D005159 3.6e-29 133.7 262 38.5
SGA_v2.0_scaffold1G00275 Striga asiatica HOM05D004305 ORTHO05D005159 4.7e-29 133.3 277 37.5
TWI38G0672 Tripterygium wilfordii HOM05D004305 ORTHO05D005159 4.7e-29 133.3 286 37.4
PGSC0003DMG400021011 Solanum tuberosum HOM05D004305 ORTHO05D005159 8.0e-29 132.5 365 33.2
MD05G1269300 Malus domestica HOM05D004305 ORTHO05D005159 1.4e-28 131.7 272 39.7
ClCG03G008260 Citrullus lanatus HOM05D004305 ORTHO05D005159 3.0e-28 130.6 268 35.1
Eucgr.D00100 Eucalyptus grandis HOM05D004305 ORTHO05D005159 3.0e-28 130.6 373 33.8
A01p12300 Brassica napus HOM05D004305 ORTHO05D005159 8.8e-28 129.0 214 42.1
CsaV3_1G037140 Cucumis sativus L. HOM05D004305 ORTHO05D005159 3.4e-27 127.1 275 37.5
Sc03g0008520 Simmondsia chinensis HOM05D004305 ORTHO05D005159 1.3e-26 125.2 323 35.9
DCAR_003840 Daucus carota HOM05D004305 ORTHO05D005159 1.7e-26 124.8 371 31.3
Cfa000806 Carpinus fangiana HOM05D004305 ORTHO05D005159 2.2e-26 124.4 374 35.3
BcaNung07356 Brassica carinata HOM05D004305 ORTHO05D005159 2.8e-26 124.0 290 34.8
BcaNung04140 Brassica carinata HOM05D004305 ORTHO05D005159 4.8e-26 123.2 214 41.6
FAN11G3528 Fragaria x ananassa HOM05D004305 ORTHO05D005159 6.3e-26 122.9 255 37.6
C01p14710 Brassica napus HOM05D004305 ORTHO05D005159 1.4e-25 121.7 224 40.2
BolC1t01423H Brassica oleracea HOM05D004305 ORTHO05D005159 1.4e-25 121.7 224 40.2
Haze_05867 Corylus avellana HOM05D004305 ORTHO05D005159 1.8e-25 121.3 367 34.1
SGA_v2.0_scaffold223G42870 Striga asiatica HOM05D004305 ORTHO05D005159 1.8e-25 121.3 259 35.5
Aa31LG6G2950 Aethionema arabicum HOM05D004305 ORTHO05D005159 2.4e-25 120.9 373 34.0
MELO3C002832.2 Cucumis melo HOM05D004305 ORTHO05D005159 2.4e-25 120.9 267 34.1
Solyc02g070040.1 Solanum lycopersicum HOM05D004305 ORTHO05D005159 2.4e-25 120.9 249 37.8
BraA01t01174Z Brassica rapa HOM05D004305 ORTHO05D005159 3.1e-25 120.6 214 41.6
FvH4_3g10700 Fragaria vesca HOM05D004305 ORTHO05D005159 3.1e-25 120.6 263 37.3
FAN25G2552 Fragaria x ananassa HOM05D004305 ORTHO05D005159 4.1e-25 120.2 255 36.5
BcaB03g11678 Brassica carinata HOM05D004305 ORTHO05D005159 5.4e-25 119.8 214 40.2
Carub.0007s2055 Capsella rubella HOM05D004305 ORTHO05D005159 9.1e-25 119.0 370 31.6
Oeu015165.2 Olea europaea HOM05D004305 ORTHO05D005159 9.1e-25 119.0 376 31.6
FAN16G1832 Fragaria x ananassa HOM05D004305 ORTHO05D005159 1.6e-24 118.2 255 36.5
Sopen02g019200 Solanum pennellii HOM05D004305 ORTHO05D005159 2.7e-24 117.5 249 37.3
BcaC09g51296 Brassica carinata HOM05D004305 ORTHO05D005159 4.5e-24 116.7 215 41.4
CARHR227440 Cardamine hirsuta HOM05D004305 ORTHO05D005159 4.5e-24 116.7 367 31.3
Thecc.06G003200 Theobroma cacao HOM05D004305 ORTHO05D005159 4.5e-24 116.7 369 32.0
AT4G20880 Arabidopsis thaliana HOM05D004305 ORTHO05D005159 2.2e-23 114.4 365 31.8
BolC7t45599H Brassica oleracea HOM05D004305 ORTHO05D005159 2.2e-23 114.4 258 36.0
Atru.chr10.781 Acer truncatum HOM05D004305 ORTHO05D005159 6.5e-23 112.8 189 42.9
ClCG01G025280 Citrullus lanatus HOM05D004305 ORTHO05D005159 8.5e-23 112.5 377 32.9
Duzib235G0167 Durio zibethinus HOM05D004305 ORTHO05D005159 8.5e-23 112.5 365 31.8
Peaxi162Scf00395g00054 Petunia axillaris HOM05D004305 ORTHO05D005159 8.5e-23 112.5 367 31.9
QL93p0201_0023 Quercus lobata HOM05D004305 ORTHO05D005159 8.5e-23 112.5 374 34.0
Lsat_1_v5_gn_9_25860 Lactuca sativa HOM05D004305 ORTHO05D005159 1.1e-22 112.1 187 44.4
QL05p063597 Quercus lobata HOM05D004305 ORTHO05D005159 1.1e-22 112.1 374 34.0
Lj4g0027556 Lotus japonicus HOM05D004305 ORTHO05D005159 1.5e-22 111.7 276 36.6
BcaNung05413 Brassica carinata HOM05D004305 ORTHO05D005159 2.5e-22 110.9 258 35.7
C07p50970 Brassica napus HOM05D004305 ORTHO05D005159 2.5e-22 110.9 258 35.7
Solyc02g022920.1 Solanum lycopersicum HOM05D004305 ORTHO05D005159 2.5e-22 110.9 372 32.0
Sp7g18970 Schrenkiella parvula HOM05D004305 ORTHO05D005159 9.4e-22 109.0 221 36.2
Actinidia32347 Actinidia chinensis HOM05D004305 ORTHO05D005159 1.2e-21 108.6 220 40.5
Nitab4.5_0001583g0210 Nicotiana tabacum HOM05D004305 ORTHO05D005159 1.6e-21 108.2 246 36.6
MELO3C007060.2 Cucumis melo HOM05D004305 ORTHO05D005159 2.1e-21 107.8 373 31.6
HanXRQChr08g0237311 Helianthus annuus HOM05D004305 ORTHO05D005159 2.1e-21 107.8 203 40.9
PGSC0003DMG400021114 Solanum tuberosum HOM05D004305 ORTHO05D005159 2.1e-21 107.8 249 35.3
Duzib192G0088 Durio zibethinus HOM05D004305 ORTHO05D005159 4.7e-21 106.7 368 32.1
PSO675G0053 Papaver somniferum HOM05D004305 ORTHO05D005159 1.0e-20 105.5 339 29.8
FAN21G2878 Fragaria x ananassa HOM05D004305 ORTHO05D005159 1.4e-20 105.1 240 35.4
Sopen02g006550 Solanum pennellii HOM05D004305 ORTHO05D005159 1.4e-20 105.1 366 31.7
AL7G33270 Arabidopsis lyrata HOM05D004305 ORTHO05D005159 1.8e-20 104.8 377 32.4
A03p52530 Brassica napus HOM05D004305 ORTHO05D005159 1.8e-20 104.8 371 29.9
BraA03t14328Z Brassica rapa HOM05D004305 ORTHO05D005159 1.8e-20 104.8 368 31.0
Nn1g03508 Nelumbo nucifera HOM05D004305 ORTHO05D005159 3.0e-20 104.0 388 28.6
CiPaw.09G142800 Carya illinoinensis HOM05D004305 ORTHO05D005159 6.8e-20 102.8 314 30.9
Ca_00869_v3 Cicer arietinum L. HOM05D004305 ORTHO05D005159 8.8e-20 102.4 220 35.9
BolC3t20584H Brassica oleracea HOM05D004305 ORTHO05D005159 1.2e-19 102.1 203 38.9
Lalb_Chr07g0189031 Lupinus albus HOM05D004305 ORTHO05D005159 2.0e-19 101.3 374 30.7
Actinidia26708 Actinidia chinensis HOM05D004305 ORTHO05D005159 2.6e-19 100.9 251 34.7
COL.COLO4_26846 Corchorus olitorius HOM05D004305 ORTHO05D005159 2.6e-19 100.9 199 37.2
Nitab4.5_0000076g0140 Nicotiana tabacum HOM05D004305 ORTHO05D005159 2.6e-19 100.9 373 30.8
CsaV3_6G052500 Cucumis sativus L. HOM05D004305 ORTHO05D005159 3.4e-19 100.5 199 37.2
Nn1g07139 Nelumbo nucifera HOM05D004305 ORTHO05D005159 4.4e-19 100.1 204 38.7
Gorai.010G144500 Gossypium raimondii HOM05D004305 ORTHO05D005159 5.7e-19 99.8 191 38.2
Nitab4.5_0004204g0010 Nicotiana tabacum HOM05D004305 ORTHO05D005159 5.7e-19 99.8 371 31.3
Psat1g165840 Pisum sativum HOM05D004305 ORTHO05D005159 9.8e-19 99.0 232 36.2
Sed0024509 Sechium edule HOM05D004305 ORTHO05D005159 1.3e-18 98.6 324 32.1
Gohir.D06G124500 Gossypium hirsutum HOM05D004305 ORTHO05D005159 1.7e-18 98.2 191 37.2
BcaC01g00679 Brassica carinata HOM05D004305 ORTHO05D005159 2.2e-18 97.8 203 38.4
C03p83040 Brassica napus HOM05D004305 ORTHO05D005159 2.2e-18 97.8 203 38.4
VMungo0540G0062 Vigna mungo HOM05D004305 ORTHO05D005159 2.2e-18 97.8 192 36.5
THA.LOC104806249 Tarenaya hassleriana HOM05D004305 ORTHO05D005159 2.8e-18 97.4 366 28.1
Lalb_Chr18g0058121 Lupinus albus HOM05D004305 ORTHO05D005159 3.7e-18 97.1 203 38.4
PGR083G0011 Punica granatum HOM05D004305 ORTHO05D005159 6.3e-18 96.3 199 40.2
Sp2g09190 Schrenkiella parvula HOM05D004305 ORTHO05D005159 6.3e-18 96.3 211 37.0
Glyma.15G132400 Glycine max HOM05D004305 ORTHO05D005159 8.3e-18 95.9 236 37.7
Gohir.A06G119900 Gossypium hirsutum HOM05D004305 ORTHO05D005159 1.1e-17 95.5 247 34.4
unitig_32.g10874 Utricularia gibba HOM05D004305 ORTHO05D005159 1.1e-17 95.5 192 39.6
MBI02_g39880_MAGBIO Magnolia biondii HOM05D004305 ORTHO05D005159 1.8e-17 94.7 200 37.0
Phvul.006G126000 Phaseolus vulgaris HOM05D004305 ORTHO05D005159 1.8e-17 94.7 192 37.5
A08p14960 Brassica napus HOM05D004305 ORTHO05D005159 2.4e-17 94.4 203 37.9
BraA08t33477Z Brassica rapa HOM05D004305 ORTHO05D005159 2.4e-17 94.4 203 37.9
CARHR178780 Cardamine hirsuta HOM05D004305 ORTHO05D005159 2.4e-17 94.4 210 37.6
Glyma.09G026200 Glycine max HOM05D004305 ORTHO05D005159 4.1e-17 93.6 235 36.2
BraA02t07875Z Brassica rapa HOM05D004305 ORTHO05D005159 7.0e-17 92.8 210 35.2
Medtr2g031350 Medicago truncatula HOM05D004305 ORTHO05D005159 9.1e-17 92.4 223 37.2
EL10Ac4g07786 Beta vulgaris HOM05D023924 ORTHO05D023401 1.2e-16 92.0 269 33.5
unitig_748.g8282 Utricularia gibba HOM05D004305 ORTHO05D005159 1.6e-16 91.7 218 32.6
BcaB07g30530 Brassica carinata HOM05D004305 ORTHO05D005159 4.5e-16 90.1 197 36.5
THA.LOC104812214 Tarenaya hassleriana HOM05D004305 ORTHO05D005159 5.9e-16 89.7 54 77.8
A02p28380 Brassica napus HOM05D004305 ORTHO05D005159 1.7e-15 88.2 212 34.9
Thhalv10025304m.g Eutrema salsugineum HOM05D004305 ORTHO05D005159 1.7e-15 88.2 368 29.9
Lj6g0010125 Lotus japonicus HOM05D004305 ORTHO05D005159 1.7e-15 88.2 194 40.2
A09p21070 Brassica napus HOM05D004305 ORTHO05D005159 5.0e-15 86.7 213 36.2
C07p27080 Brassica napus HOM05D004305 ORTHO05D005159 5.0e-15 86.7 211 33.6
Thhalv10003311m.g Eutrema salsugineum HOM05D004305 ORTHO05D005159 8.6e-15 85.9 213 33.8
Medtr4g094532 Medicago truncatula HOM05D004305 ORTHO05D005159 8.6e-15 85.9 267 29.2
BcaC06g34566 Brassica carinata HOM05D004305 ORTHO05D005159 1.5e-14 85.1 211 33.2
BraA06t27598Z Brassica rapa HOM05D004305 ORTHO05D005159 1.5e-14 85.1 205 33.2
BcaC03g16656 Brassica carinata HOM05D004305 ORTHO05D005159 2.5e-14 84.3 210 33.3
BraA09t37708Z Brassica rapa HOM05D004305 ORTHO05D005159 4.3e-14 83.6 209 34.4
unitig_32.g11679 Utricularia gibba HOM05D004305 ORTHO05D005159 7.2e-14 82.8 83 50.6
BcaB07g30950 Brassica carinata HOM05D004305 ORTHO05D005159 9.5e-14 82.4 210 32.9
AUR62014849 Chenopodium quinoa HOM05D002349 ORTHO05D002464 9.5e-14 82.4 87 56.3
BolC7t43238H Brassica oleracea HOM05D004305 ORTHO05D005159 1.6e-13 81.6 211 33.2
unitig_748.g7348 Utricularia gibba HOM05D004305 ORTHO05D005159 2.1e-13 81.3 193 32.6
BcaC06g31624 Brassica carinata HOM05D004305 ORTHO05D005159 1.8e-12 78.2 211 32.2
BolC9t55570H Brassica oleracea HOM05D004305 ORTHO05D005159 2.3e-12 77.8 210 31.9
BcaC04g21838 Brassica carinata HOM05D004305 ORTHO05D005159 4.0e-12 77.0 208 32.7
C09p26810 Brassica napus HOM05D004305 ORTHO05D005159 4.0e-12 77.0 208 32.7
BolC2t10530H Brassica oleracea HOM05D004305 ORTHO05D005159 6.8e-12 76.3 191 34.6
Sed0021635 Sechium edule HOM05D004305 ORTHO05D005159 8.9e-12 75.9 221 35.3
CDE02G2479 Ceratophyllum demersum HOM05D006189 ORTHO05D007765 1.5e-11 75.1 80 55.0
AL8G15540 Arabidopsis lyrata HOM05D004305 ORTHO05D005159 2.0e-11 74.7 208 34.6
Psat7g094000 Pisum sativum HOM05D004305 ORTHO05D005159 2.0e-11 74.7 194 33.5
SHI24805 Sapria himalayana HOM05D004305 ORTHO05D005159 2.6e-11 74.3 61 62.3
Ah.04g165990 Amaranthus hybridus HOM05D023924 ORTHO05D023401 1.3e-10 72.0 292 28.8
ECA247G2099 Erigeron canadensis HOM05D004305 ORTHO05D005159 2.9e-10 70.9 55 61.8
Nn2g11492 Nelumbo nucifera HOM05D004305 ORTHO05D005159 8.3e-10 69.3 59 59.3
AT5G44350 Arabidopsis thaliana HOM05D004305 ORTHO05D005159 5.4e-09 66.6 187 35.8
Carub.0008s0412 Capsella rubella HOM05D004305 ORTHO05D005159 7.0e-09 66.2 238 29.4
A06p47270 Brassica napus HOM05D004305 ORTHO05D005159 9.2e-09 65.9 206 32.0
TPR.G30380 Trifolium pratense HOM05D004305 ORTHO05D005159 9.2e-09 65.9 199 33.7
RcHm_v2.0_Chr2g0145901 Rosa chinensis HOM05D004305 ORTHO05D035653 4.6e-08 63.5 132 36.4
Sed0021177 Sechium edule HOM05D004305 ORTHO05D005159 5.0e-07 60.1 55 54.5


User provided reference genes

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