Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv06724 Davidia involucrata HOM05D003430 ORTHO05D004809 0.0e+00 1199.1 593 100.0
ECA039G0023 Erigeron canadensis HOM05D003430 ORTHO05D004809 1.4e-267 926.0 560 85.0
Solyc00g500241.1 Solanum lycopersicum HOM05D003430 ORTHO05D004809 1.1e-264 916.4 570 83.3
Medtr0082s0260 Medicago truncatula HOM05D003430 ORTHO05D004809 2.5e-251 872.1 610 76.1
Solyc00g500224.1 Solanum lycopersicum HOM05D003430 ORTHO05D004809 1.7e-247 859.4 572 79.4
HanXRQMTg0579531 Helianthus annuus HOM05D003430 ORTHO05D004809 1.6e-245 852.8 541 80.6
SGA_v2.0_scaffold245G44667 Striga asiatica HOM05D003430 ORTHO05D004809 7.7e-245 850.5 541 82.6
Gorai.001G162300 Gossypium raimondii HOM05D003430 ORTHO05D004809 1.9e-243 845.9 562 78.5
Ah.01g011780 Amaranthus hybridus HOM05D003430 ORTHO05D004809 3.5e-229 798.5 527 79.5
Ah.10g028080 Amaranthus hybridus HOM05D003430 ORTHO05D004809 5.4e-222 774.6 541 75.6
Ca_28103_v3 Cicer arietinum L. HOM05D003430 ORTHO05D004809 8.9e-217 757.3 615 68.3
Peaxi162Scf00456g00037 Petunia axillaris HOM05D003430 ORTHO05D004809 6.4e-215 751.1 541 73.4
HanXRQChr09g0250621 Helianthus annuus HOM05D003430 ORTHO05D004809 2.4e-214 749.2 522 74.7
Aa31csc1081G20 Aethionema arabicum HOM05D003430 ORTHO05D004809 4.4e-208 728.4 532 73.3
Cfa023013 Carpinus fangiana HOM05D003430 ORTHO05D004809 1.7e-207 726.5 541 71.7
DCAR_032431 Daucus carota HOM05D003430 ORTHO05D004809 1.9e-206 723.0 541 71.0
Lalb_Chr00c21g0406111 Lupinus albus HOM05D003430 ORTHO05D004809 1.8e-193 679.9 545 68.3
RcHm_v2.0_MTg0498431 Rosa chinensis HOM05D003430 ORTHO05D004809 6.8e-193 677.9 542 68.3
CANSAT16G0003 Cannabis sativa HOM05D003430 ORTHO05D004809 1.9e-190 669.8 541 68.0
A04p09460 Brassica napus HOM05D003430 ORTHO05D004809 7.1e-190 667.9 545 67.3
BraSC177t45748Z Brassica rapa HOM05D003430 ORTHO05D004809 7.1e-190 667.9 545 67.3
HanXRQChr00c0055g0571401 Helianthus annuus HOM05D003430 ORTHO05D004809 1.3e-188 663.7 541 66.2
CARHR282710 Cardamine hirsuta HOM05D003430 ORTHO05D004809 8.7e-188 661.0 545 66.8
CARHR288640 Cardamine hirsuta HOM05D003430 ORTHO05D004809 8.7e-188 661.0 545 66.8
ATMG00180 Arabidopsis thaliana HOM05D003430 ORTHO05D004809 3.3e-187 659.1 545 66.6
TPR.G13784 Trifolium pratense HOM05D003430 ORTHO05D004809 6.0e-181 638.3 522 67.0
Nitab4.5_0001127g0210 Nicotiana tabacum HOM05D003430 ORTHO05D004809 3.8e-167 592.4 526 63.1
Nitab4.5_0003945g0010 Nicotiana tabacum HOM05D003430 ORTHO05D004809 1.3e-159 567.4 541 59.0
LjContig00439g0009782 Lotus japonicus HOM05D003430 ORTHO05D004809 1.1e-155 554.3 541 58.8
Solyc00g052430.2 Solanum lycopersicum HOM05D003430 ORTHO05D004809 1.6e-154 550.4 463 64.6
Lj2C1222G64 Lonicera japonica HOM05D003430 ORTHO05D004809 2.8e-154 549.7 284 97.2
HanXRQChr11g0335431 Helianthus annuus HOM05D003430 ORTHO05D004809 1.1e-153 547.7 541 58.8
LjContig00446g0005008 Lotus japonicus HOM05D003430 ORTHO05D004809 5.0e-151 538.9 534 58.2
Sopen00g002720 Solanum pennellii HOM05D003430 ORTHO05D004809 1.9e-147 526.9 284 94.0
Peaxi162Scf00456g00035 Petunia axillaris HOM05D003430 ORTHO05D004809 1.4e-145 520.8 284 93.3
SabraMtG0000400 Salix brachista HOM05D003430 ORTHO05D004809 9.1e-145 518.1 284 92.3
Nn1g10089 Nelumbo nucifera HOM05D003430 ORTHO05D004809 3.4e-144 516.2 271 95.9
SHI42478 Sapria himalayana HOM05D003430 ORTHO05D004809 1.8e-140 503.8 592 54.1
BolSC28t60411H Brassica oleracea HOM05D003430 ORTHO05D004809 4.4e-139 499.2 288 90.3
Psat3g040120 Pisum sativum HOM05D003430 ORTHO05D004809 2.6e-136 490.0 275 92.0
CDE02G0363 Ceratophyllum demersum HOM05D003430 ORTHO05D004809 7.7e-136 488.4 284 87.3
Sopen11g022460 Solanum pennellii HOM05D000004 ORTHO05D000002 7.7e-136 488.4 264 93.9
Lj2C1222T70 Lonicera japonica HOM05D003430 ORTHO05D004809 1.0e-135 488.0 257 92.6
Lalb_Chr00c39g0409071 Lupinus albus HOM05D003430 ORTHO05D004809 1.0e-135 488.0 280 90.4
Lalb_Chr00c39g0409251 Lupinus albus HOM05D003430 ORTHO05D004809 1.0e-135 488.0 280 90.4
Lalb_Chr00c51g0413171 Lupinus albus HOM05D003430 ORTHO05D004809 1.0e-135 488.0 280 90.4
Lalb_Chr10g0094601 Lupinus albus HOM05D003430 ORTHO05D004809 4.2e-134 482.6 280 89.3
arahy.Tifrunner.gnm1.ann1.41QMJ9 Arachis hypogaea HOM05D003430 ORTHO05D004809 7.2e-134 481.9 288 87.2
arahy.Tifrunner.gnm1.ann1.AJMC4E Arachis hypogaea HOM05D003430 ORTHO05D004809 7.2e-134 481.9 288 87.2
VMungo0044G0002 Vigna mungo HOM05D003430 ORTHO05D004809 9.4e-134 481.5 267 92.9
Sc11g0004420 Simmondsia chinensis HOM05D003430 ORTHO05D004809 4.7e-133 479.2 271 90.8
SalBow1G3892 Salvia bowleyana HOM05D003430 ORTHO05D004809 1.8e-132 477.2 271 91.5
AUR62042332 Chenopodium quinoa HOM05D003430 ORTHO05D004809 2.6e-131 473.4 271 89.7
PGSC0003DMG400037371 Solanum tuberosum HOM05D003430 ORTHO05D004809 2.6e-131 473.4 273 89.4
unitig_87.g27925 Utricularia gibba HOM05D003430 ORTHO05D004809 1.3e-130 471.1 284 87.7
Gorai.002G142200 Gossypium raimondii HOM05D003430 ORTHO05D004809 3.7e-130 469.5 481 57.0
Hma1.2p1_1286F.1_g273040 Hydrangea macrophylla HOM05D003430 ORTHO05D004809 1.1e-126 458.0 272 87.9
MBI05_g40995_MAGBIO Magnolia biondii HOM05D003430 ORTHO05D004809 1.0e-124 451.4 544 50.4
Thhalv10002931m.g Eutrema salsugineum HOM05D003430 ORTHO05D004809 3.3e-123 446.4 545 50.6
Lsat_1_v5_gn_6_109000 Lactuca sativa HOM05D003430 ORTHO05D004809 1.3e-122 444.5 283 82.0
Zm00001eb435500 Zea mays HOM05D003430 ORTHO05D004809 2.2e-122 443.7 276 83.3
Zm00001eb436090 Zea mays HOM05D003430 ORTHO05D004809 2.2e-122 443.7 276 83.3
Zm00001eb437350 Zea mays HOM05D003430 ORTHO05D004809 2.2e-122 443.7 276 83.3
Zm00001eb440330 Zea mays HOM05D003430 ORTHO05D004809 2.2e-122 443.7 276 83.3
Zm00001eb440360 Zea mays HOM05D003430 ORTHO05D004809 2.2e-122 443.7 276 83.3
Zm00001eb442170 Zea mays HOM05D003430 ORTHO05D004809 2.2e-122 443.7 276 83.3
arahy.Tifrunner.gnm1.ann1.ABQ8F7 Arachis hypogaea HOM05D003430 ORTHO05D004809 1.4e-121 441.0 267 86.1
arahy.Tifrunner.gnm1.ann1.CY2VCK Arachis hypogaea HOM05D003430 ORTHO05D004809 1.4e-121 441.0 267 86.1
Lj2C1231G44 Lonicera japonica HOM05D003430 ORTHO05D004809 3.2e-118 429.9 267 84.6
Sp3g25650 Schrenkiella parvula HOM05D003430 ORTHO05D004809 4.7e-117 426.0 275 82.9
SHI29634 Sapria himalayana HOM05D003430 ORTHO05D004809 3.8e-111 406.4 284 77.1
BolSC28t60376H Brassica oleracea HOM05D003430 ORTHO05D004809 1.9e-110 404.1 214 91.1
Nn2g14911 Nelumbo nucifera HOM05D003430 ORTHO05D004809 6.8e-108 395.6 216 93.1
COL.COLO4_04429 Corchorus olitorius HOM05D003430 ORTHO05D004809 3.7e-106 389.8 229 89.5
SabraMtG0000300 Salix brachista HOM05D003430 ORTHO05D004809 1.8e-105 387.5 223 86.5
Medtr0024s0140 Medicago truncatula HOM05D003430 ORTHO05D004809 1.6e-104 384.4 220 90.5
arahy.Tifrunner.gnm1.ann1.087TPC Arachis hypogaea HOM05D003430 ORTHO05D004809 4.7e-93 346.3 275 71.3
CDE02G3943 Ceratophyllum demersum HOM05D003430 ORTHO05D004809 6.2e-93 345.9 213 81.7
Lj2C1222G56 Lonicera japonica HOM05D003430 ORTHO05D004809 6.8e-92 342.4 179 97.8
Zm00001eb435490 Zea mays HOM05D003430 ORTHO05D004809 1.6e-88 331.3 240 72.1
Zm00001eb436080 Zea mays HOM05D003430 ORTHO05D004809 1.6e-88 331.3 240 72.1
Lalb_Chr00c39g0409061 Lupinus albus HOM05D003430 ORTHO05D004809 3.5e-88 330.1 168 94.0
Lalb_Chr00c39g0409241 Lupinus albus HOM05D003430 ORTHO05D004809 3.5e-88 330.1 168 94.0
Lalb_Chr00c51g0413151 Lupinus albus HOM05D003430 ORTHO05D004809 3.5e-88 330.1 168 94.0
arahy.Tifrunner.gnm1.ann1.13LUN9 Arachis hypogaea HOM05D003430 ORTHO05D004809 6.6e-87 325.9 168 92.3
arahy.Tifrunner.gnm1.ann1.2J3QCS Arachis hypogaea HOM05D003430 ORTHO05D004809 6.6e-87 325.9 168 92.3
arahy.Tifrunner.gnm1.ann1.4C4WEU Arachis hypogaea HOM05D003430 ORTHO05D004809 6.6e-87 325.9 168 92.3
arahy.Tifrunner.gnm1.ann1.Y9E1XU Arachis hypogaea HOM05D003430 ORTHO05D004809 6.6e-87 325.9 168 92.3
Sp3g25660 Schrenkiella parvula HOM05D003430 ORTHO05D004809 6.6e-87 325.9 172 91.3
arahy.Tifrunner.gnm1.ann1.ZQA7LX Arachis hypogaea HOM05D003430 ORTHO05D004809 8.6e-87 325.5 170 91.2
BolSC28t60410H Brassica oleracea HOM05D003430 ORTHO05D004809 3.3e-86 323.6 179 87.2
Medtr0024s0150 Medicago truncatula HOM05D003430 ORTHO05D004809 1.8e-84 317.8 168 89.9
Gohir.D01G116901 Gossypium hirsutum HOM05D003430 ORTHO05D004809 4.3e-78 296.6 336 50.6
SHI29635 Sapria himalayana HOM05D003430 ORTHO05D004809 1.2e-77 295.0 149 94.0
BraSC48t46245Z Brassica rapa HOM05D003430 ORTHO05D004809 6.2e-77 292.7 317 52.1
BraSC54t46373Z Brassica rapa HOM05D003430 ORTHO05D004809 6.2e-77 292.7 317 52.1
Sc11g0004440 Simmondsia chinensis HOM05D003430 ORTHO05D004809 6.2e-77 292.7 148 93.2
BraSC77t46628Z Brassica rapa HOM05D003430 ORTHO05D004809 1.8e-76 291.2 317 51.7
VMungo0044G0003 Vigna mungo HOM05D003430 ORTHO05D004809 6.8e-76 289.3 149 92.6
Cpa.g.c41010 Carica papaya HOM05D003430 ORTHO05D004809 1.2e-75 288.5 158 87.3
HanXRQChr11g0335401 Helianthus annuus HOM05D003430 ORTHO05D004809 2.6e-75 287.3 231 69.3
Nitab4.5_0000172g0240 Nicotiana tabacum HOM05D003430 ORTHO05D004809 5.8e-75 286.2 271 60.9
Nitab4.5_0000172g1130 Nicotiana tabacum HOM05D003430 ORTHO05D004809 7.6e-75 285.8 259 59.8
ATR0559G258 Amborella trichopoda HOM05D003430 ORTHO05D004809 1.1e-73 282.0 148 90.5
Nitab4.5_0001152g0350 Nicotiana tabacum HOM05D003430 ORTHO05D004809 7.8e-72 275.8 309 51.5
arahy.Tifrunner.gnm1.ann1.0UJ9QK Arachis hypogaea HOM05D003430 ORTHO05D004809 1.9e-70 271.2 202 75.2
Lj2C1222T53 Lonicera japonica HOM05D003430 ORTHO05D004809 3.6e-69 266.9 148 85.1
EL10Ac3g07005 Beta vulgaris HOM05D003430 ORTHO05D004809 6.2e-69 266.2 154 90.3
RhsimMtG0004400 Rhododendron simsii HOM05D003430 ORTHO05D004809 9.0e-68 262.3 142 93.7
Lj6g0002337 Lotus japonicus HOM05D003430 ORTHO05D004809 9.9e-67 258.8 168 78.6
BcaC05g27378 Brassica carinata HOM05D003430 ORTHO05D004809 1.7e-66 258.1 146 91.1
Lsat_1_v5_gn_5_16620 Lactuca sativa HOM05D003430 ORTHO05D004809 2.7e-64 250.8 172 79.7
COL.COLO4_04428 Corchorus olitorius HOM05D003430 ORTHO05D004809 2.5e-62 244.2 146 87.7
unitig_87.g27923 Utricularia gibba HOM05D003430 ORTHO05D004809 1.2e-59 235.3 124 89.5
SHI50824 Sapria himalayana HOM05D003430 ORTHO05D004809 5.4e-57 226.5 141 85.1
Solyc10g076630.1 Solanum lycopersicum HOM05D003430 ORTHO05D004809 1.5e-54 218.4 109 89.0
Nitab4.5_0010559g0010 Nicotiana tabacum HOM05D003430 ORTHO05D004809 2.8e-53 214.2 112 92.0
Solyc11g039360.2 Solanum lycopersicum HOM05D003430 ORTHO05D004809 3.1e-52 210.7 112 91.1
CAN.G600.1 Capsicum annuum HOM05D003430 ORTHO05D004809 1.6e-48 198.4 148 68.9
Nitab4.5_0004256g0030 Nicotiana tabacum HOM05D003430 ORTHO05D004809 1.8e-47 194.9 112 86.6
Sabra12G0092700 Salix brachista HOM05D003430 ORTHO05D004809 5.6e-46 189.9 107 89.7
Nitab4.5_0001152g0410 Nicotiana tabacum HOM05D003430 ORTHO05D004809 1.3e-45 188.7 106 90.6
arahy.Tifrunner.gnm1.ann1.J6HUIG Arachis hypogaea HOM05D003430 ORTHO05D026951 1.2e-43 182.2 243 49.8
Nitab4.5_0000172g0960 Nicotiana tabacum HOM05D003430 ORTHO05D004809 1.2e-43 182.2 158 66.5
Pp3c4_28970 Physcomitrium patens HOM05D003430 ORTHO05D004809 1.5e-43 181.8 160 63.8
Pp3c4_28972 Physcomitrium patens HOM05D003430 ORTHO05D004809 1.5e-43 181.8 160 63.8
Lalb_Chr21g0308991 Lupinus albus HOM05D002109 ORTHO05D002149 2.6e-43 181.0 100 89.0
BolC1t03461H Brassica oleracea HOM05D003430 ORTHO05D004809 7.6e-43 179.5 159 64.2
Peaxi162Scf00456g00036 Petunia axillaris HOM05D003430 ORTHO05D004809 6.5e-42 176.4 86 94.2
SHI20516 Sapria himalayana HOM05D003430 ORTHO05D004809 7.9e-40 169.5 150 62.0
Aqoxy23s002 Aquilegia oxysepala HOM05D003430 ORTHO05D004809 1.8e-39 168.3 89 91.0
Gohir.D01G117000 Gossypium hirsutum HOM05D003430 ORTHO05D004809 2.4e-36 157.9 96 84.4
Aqoxy4G00518 Aquilegia oxysepala HOM05D003430 ORTHO05D004809 9.0e-36 156.0 93 86.0
BolC1t03462H Brassica oleracea HOM05D003430 ORTHO05D004809 9.0e-36 156.0 93 84.9
SHI04802 Sapria himalayana HOM05D003430 ORTHO05D004809 1.0e-31 142.5 316 36.4
AT2G07815 Arabidopsis thaliana HOM05D003430 ORTHO05D004809 2.0e-30 138.3 76 90.8
BraSC54t46375Z Brassica rapa HOM05D003430 ORTHO05D004809 2.0e-30 138.3 76 90.8
BraSC77t46627Z Brassica rapa HOM05D003430 ORTHO05D004809 2.0e-30 138.3 76 90.8
SHI31749 Sapria himalayana HOM05D003430 ORTHO05D004809 2.5e-30 137.9 81 84.0
SalBow1G2589 Salvia bowleyana HOM05D003430 ORTHO05D004809 1.3e-29 135.6 101 71.3
Medtr8g091515 Medicago truncatula HOM05D003430 ORTHO05D004809 1.1e-25 122.5 65 92.3
SHI03773 Sapria himalayana HOM05D003430 ORTHO05D004809 9.4e-25 119.4 91 63.7
Nn044s41806 Nelumbo nucifera HOM05D003430 ORTHO05D004809 3.6e-24 117.5 59 96.6
SHI20518 Sapria himalayana HOM05D003430 ORTHO05D004809 9.7e-22 109.4 99 56.6
GSVIVG01031933001 Vitis vinifera HOM05D003430 ORTHO05D004809 1.2e-19 102.4 66 72.7
SHI33655 Sapria himalayana HOM05D003430 ORTHO05D004809 3.5e-19 100.9 154 43.5
Solyc03g013370.1 Solanum lycopersicum HOM05D003430 ORTHO05D004809 2.2e-18 98.2 54 81.5
Solyc05g025700.1 Solanum lycopersicum HOM05D003430 ORTHO05D004809 1.5e-17 95.5 98 54.1
HPP92_026915 Vanilla planifolia HOM05D003430 ORTHO05D004809 8.0e-16 89.7 64 67.2
SHI25675 Sapria himalayana HOM05D003430 ORTHO05D004809 1.8e-15 88.6 51 76.5
SHI04803 Sapria himalayana HOM05D003430 ORTHO05D004809 3.9e-15 87.4 78 60.3
SHI32119 Sapria himalayana HOM05D003430 ORTHO05D004809 8.8e-15 86.3 64 67.2
Ciclev10017542m.g Citrus clementina HOM05D003430 ORTHO05D004809 7.4e-14 83.2 46 84.8
SHI32117 Sapria himalayana HOM05D003430 ORTHO05D004809 9.7e-14 82.8 67 65.7
Prupe.5G026600 Prunus persica HOM05D003430 ORTHO05D004809 1.3e-13 82.4 68 61.8
SHI25674 Sapria himalayana HOM05D003430 ORTHO05D004809 1.3e-13 82.4 63 65.1
SGA_v2.0_scaffold178G39492 Striga asiatica HOM05D003430 ORTHO05D004809 1.1e-12 79.3 53 66.0
SHI20517 Sapria himalayana HOM05D003430 ORTHO05D004809 1.8e-12 78.6 81 58.0
BraSC48t46246Z Brassica rapa HOM05D003430 ORTHO05D014065 2.4e-12 78.2 46 80.4
TPR.G457 Trifolium pratense HOM05D003430 ORTHO05D004809 3.1e-12 77.8 48 83.3
TPR.G24362 Trifolium pratense HOM05D003430 ORTHO05D004809 5.3e-12 77.0 71 64.8
Solyc00g500167.1 Solanum lycopersicum HOM05D001426 ORTHO05D001389 2.0e-11 75.1 36 97.2
BraSC177t45749Z Brassica rapa HOM05D003430 ORTHO05D026951 7.7e-11 73.2 34 97.1
Medtr5g068830 Medicago truncatula HOM05D003430 ORTHO05D004809 7.7e-11 73.2 55 72.7
MBI01_g19134_MAGBIO Magnolia biondii HOM05D005598 ORTHO05D006587 2.9e-10 71.2 72 62.5
C01p34960 Brassica napus HOM05D003430 ORTHO05D004809 6.5e-10 70.1 167 34.7
Nitab4.5_0000172g1190 Nicotiana tabacum HOM05D003430 ORTHO05D004809 8.5e-10 69.7 40 85.0
SHI33657 Sapria himalayana HOM05D003430 ORTHO05D004809 2.5e-09 68.2 71 53.5
Peaxi162Scf00160g00035 Petunia axillaris HOM05D004637 ORTHO05D005320 4.7e-08 63.9 32 90.6
Nitab4.5_0002739g0180 Nicotiana tabacum HOM05D001560 ORTHO05D003613 1.8e-07 62.0 61 50.8
arahy.Tifrunner.gnm1.ann1.FZ2FI3 Arachis hypogaea HOM05D003430 ORTHO05D014065 3.4e-06 57.8 45 73.3
arahy.Tifrunner.gnm1.ann1.N4Y7JX Arachis hypogaea HOM05D003430 ORTHO05D026951 3.4e-06 57.8 45 73.3
arahy.Tifrunner.gnm1.ann1.XP9ZJX Arachis hypogaea HOM05D003430 ORTHO05D026951 3.4e-06 57.8 45 73.3
Solyc04g071020.1 Solanum lycopersicum HOM05D003430 ORTHO05D000314 9.7e-06 56.2 46 71.7


User provided reference genes

Program Settings