Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv06713 Davidia involucrata HOM05D003783 ORTHO05D004568 2.0e-208 728.8 352 100.0
Peaxi162Scf02040g00001 Petunia axillaris HOM05D003783 ORTHO05D004568 2.1e-189 665.6 335 96.7
DCAR_031805 Daucus carota HOM05D003783 ORTHO05D004568 8.8e-180 633.6 318 97.2
DCAR_032429 Daucus carota HOM05D003783 ORTHO05D004568 8.8e-180 633.6 318 97.2
RhsimMtG0005400 Rhododendron simsii HOM05D003783 ORTHO05D004568 1.4e-177 626.3 318 96.2
Solyc00g049210.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 2.4e-177 625.5 318 95.9
Solyc00g500249.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 2.4e-177 625.5 318 95.9
Solyc00g500348.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 2.4e-177 625.5 318 95.9
RcHm_v2.0_Chr6g0258021 Rosa chinensis HOM05D003783 ORTHO05D004568 1.3e-175 619.8 317 95.0
RcHm_v2.0_MTg0498851 Rosa chinensis HOM05D003783 ORTHO05D004568 1.3e-175 619.8 317 95.0
Nn1g10045 Nelumbo nucifera HOM05D003783 ORTHO05D004568 2.9e-175 618.6 318 95.6
Nn1g10116 Nelumbo nucifera HOM05D003783 ORTHO05D004568 2.9e-175 618.6 318 95.6
MBI05_g05347_MAGBIO Magnolia biondii HOM05D003783 ORTHO05D004568 6.5e-175 617.5 321 94.7
Aqoxy163s002 Aquilegia oxysepala HOM05D003783 ORTHO05D004568 1.9e-174 615.9 318 94.7
MD14G1092300 Malus domestica HOM05D003783 ORTHO05D004568 5.5e-174 614.4 318 93.7
Gorai.001G160200 Gossypium raimondii HOM05D003783 ORTHO05D004568 7.2e-174 614.0 319 94.7
Nn1g09973 Nelumbo nucifera HOM05D003783 ORTHO05D004568 7.2e-174 614.0 319 95.3
Nn3g20873 Nelumbo nucifera HOM05D003783 ORTHO05D004568 2.1e-173 612.5 318 94.0
Sc11g0004390 Simmondsia chinensis HOM05D003783 ORTHO05D004568 2.1e-173 612.5 318 94.7
LjContig00315g0021149 Lotus japonicus HOM05D003783 ORTHO05D004568 8.8e-172 607.1 319 93.7
LjContig00439g0010231 Lotus japonicus HOM05D003783 ORTHO05D004568 8.8e-172 607.1 319 93.7
HanXRQChr04g0109071 Helianthus annuus HOM05D003783 ORTHO05D004568 2.0e-171 605.9 318 94.3
HanXRQChr08g0236011 Helianthus annuus HOM05D003783 ORTHO05D004568 2.0e-171 605.9 318 94.3
HanXRQChr14g0434351 Helianthus annuus HOM05D003783 ORTHO05D004568 2.0e-171 605.9 318 94.3
HanXRQMTg0579571 Helianthus annuus HOM05D003783 ORTHO05D004568 2.0e-171 605.9 318 94.3
Lsat_1_v5_gn_5_16100 Lactuca sativa HOM05D003783 ORTHO05D004568 1.3e-170 603.2 317 94.3
CAN.G497.18 Capsicum annuum HOM05D003783 ORTHO05D004568 4.1e-169 598.2 318 92.5
Psat4g179160 Pisum sativum HOM05D003783 ORTHO05D004568 9.1e-169 597.0 319 91.8
arahy.Tifrunner.gnm1.ann1.WX3135 Arachis hypogaea HOM05D003783 ORTHO05D004568 1.2e-168 596.7 319 91.8
ECA039G0028 Erigeron canadensis HOM05D003783 ORTHO05D004568 2.0e-168 595.9 318 93.4
HanXRQChr01g0003471 Helianthus annuus HOM05D003783 ORTHO05D004568 3.5e-168 595.1 318 92.1
SabraMtG0000900 Salix brachista HOM05D003783 ORTHO05D004568 3.5e-168 595.1 318 91.5
CANSAT16G0001 Cannabis sativa HOM05D003783 ORTHO05D004568 3.8e-167 591.7 318 92.5
CsaV3_UNG210090 Cucumis sativus L. HOM05D003783 ORTHO05D004568 1.1e-166 590.1 318 90.6
SGA_v2.0_scaffold245G44749 Striga asiatica HOM05D003783 ORTHO05D004568 7.2e-166 587.4 425 72.2
Ah.10g028070 Amaranthus hybridus HOM05D003783 ORTHO05D004568 1.4e-164 583.2 318 90.9
Ah.01g011790 Amaranthus hybridus HOM05D003783 ORTHO05D004568 4.0e-164 581.6 318 90.6
Lsat_1_v5_gn_7_99780 Lactuca sativa HOM05D003783 ORTHO05D004568 1.2e-160 570.1 317 89.6
Lalb_Chr00c29g0408271 Lupinus albus HOM05D003783 ORTHO05D004568 1.6e-160 569.7 322 90.1
Zm00001eb434740 Zea mays HOM05D003783 ORTHO05D004568 3.8e-159 565.1 320 90.0
Zm00001eb436360 Zea mays HOM05D003783 ORTHO05D004568 3.8e-159 565.1 320 90.0
Zm00001eb437010 Zea mays HOM05D003783 ORTHO05D004568 3.8e-159 565.1 320 90.0
Zm00001eb438050 Zea mays HOM05D003783 ORTHO05D004568 3.8e-159 565.1 320 90.0
Zm00001eb438170 Zea mays HOM05D003783 ORTHO05D004568 3.8e-159 565.1 320 90.0
Zm00001eb438820 Zea mays HOM05D003783 ORTHO05D004568 3.8e-159 565.1 320 90.0
AUR62042333 Chenopodium quinoa HOM05D003783 ORTHO05D004568 8.3e-154 547.4 302 90.1
Aa31csc549G20 Aethionema arabicum HOM05D003783 ORTHO05D004568 1.7e-151 539.7 306 87.6
HanXRQChr09g0246391 Helianthus annuus HOM05D003783 ORTHO05D004568 1.2e-144 516.9 318 83.3
Peaxi162Scf00707g00004 Petunia axillaris HOM05D003783 ORTHO05D004568 2.0e-144 516.2 260 97.3
PGSC0003DMG400016897 Solanum tuberosum HOM05D003783 ORTHO05D004568 1.2e-139 500.4 254 97.2
CDE02G1256 Ceratophyllum demersum HOM05D003783 ORTHO05D004568 1.1e-137 493.8 261 91.6
Nitab4.5_0010936g0010 Nicotiana tabacum HOM05D003783 ORTHO05D004568 7.0e-137 491.1 318 79.9
Nitab4.5_0000128g0160 Nicotiana tabacum HOM05D003783 ORTHO05D004568 2.5e-134 482.6 305 79.3
Medtr0212s0020 Medicago truncatula HOM05D003783 ORTHO05D004568 5.2e-132 474.9 319 78.4
Gorai.013G137500 Gossypium raimondii HOM05D003783 ORTHO05D004568 3.5e-128 462.2 319 76.8
SalBow1G3009 Salvia bowleyana HOM05D003783 ORTHO05D004568 2.2e-122 443.0 239 93.7
SHI36895 Sapria himalayana HOM05D003783 ORTHO05D004568 1.9e-121 439.9 284 79.9
Nitab4.5_0000592g0140 Nicotiana tabacum HOM05D003783 ORTHO05D004568 7.1e-121 438.0 289 78.9
SHI54253 Sapria himalayana HOM05D003783 ORTHO05D004568 2.1e-117 426.4 257 85.2
AUR62033936 Chenopodium quinoa HOM05D003783 ORTHO05D004568 9.3e-113 411.0 228 88.6
Lsat_1_v5_gn_7_67781 Lactuca sativa HOM05D003783 ORTHO05D004568 2.4e-105 386.3 217 87.6
HanXRQChr01g0029691 Helianthus annuus HOM05D003783 ORTHO05D004568 4.6e-104 382.1 208 90.9
BNapus_Darmor_BZH_scaffold_234p00030 Brassica napus HOM05D003783 ORTHO05D004568 4.0e-100 369.0 191 96.3
BraSC177t45753Z Brassica rapa HOM05D003783 ORTHO05D004568 4.0e-100 369.0 191 96.3
Sp3g25620 Schrenkiella parvula HOM05D003783 ORTHO05D004568 4.0e-100 369.0 218 86.2
Sopen05g012690 Solanum pennellii HOM05D003783 ORTHO05D004568 9.9e-99 364.4 198 92.9
AL3G44640 Arabidopsis lyrata HOM05D003783 ORTHO05D004568 1.1e-97 360.9 187 96.3
ATMG00830 Arabidopsis thaliana HOM05D003783 ORTHO05D004568 4.2e-97 359.0 187 95.7
BcaC09g49580 Brassica carinata HOM05D003783 ORTHO05D004568 5.5e-97 358.6 191 94.8
CARHR283110 Cardamine hirsuta HOM05D003783 ORTHO05D004568 7.1e-97 358.2 187 95.2
Solyc11g063630.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 1.5e-94 350.5 216 81.0
BraSC77t46622Z Brassica rapa HOM05D003783 ORTHO05D004568 3.3e-94 349.4 181 96.7
Thhalv10029166m.g Eutrema salsugineum HOM05D003783 ORTHO05D004568 9.0e-92 341.3 191 91.1
CAN.G134.19 Capsicum annuum HOM05D003783 ORTHO05D004568 1.0e-90 337.8 173 90.8
HanXRQChr11g0334181 Helianthus annuus HOM05D003783 ORTHO05D004568 3.2e-89 332.8 217 80.2
HanXRQChr17g0544011 Helianthus annuus HOM05D003783 ORTHO05D004568 3.2e-89 332.8 217 80.2
TPR.G22134 Trifolium pratense HOM05D003783 ORTHO05D004568 7.1e-89 331.6 175 90.9
CDE02G3531 Ceratophyllum demersum HOM05D003783 ORTHO05D004568 3.0e-87 326.2 273 64.1
ATR1173G003 Amborella trichopoda HOM05D003783 ORTHO05D004568 5.7e-86 322.0 190 82.1
SHI54470 Sapria himalayana HOM05D003783 ORTHO05D004568 6.3e-85 318.5 203 82.8
GSVIVG01006218001 Vitis vinifera HOM05D003783 ORTHO05D004568 1.2e-83 314.3 291 59.5
Eucgr.C03075 Eucalyptus grandis HOM05D003783 ORTHO05D004568 1.3e-82 310.8 318 55.7
GSVIVG01004964001 Vitis vinifera HOM05D003783 ORTHO05D004568 1.7e-82 310.5 291 59.1
MSTRG.27795 Avicennia marina HOM05D003783 ORTHO05D004568 3.5e-80 302.8 163 90.8
Ah.00g237920 Amaranthus hybridus HOM05D003783 ORTHO05D004568 2.2e-77 293.5 227 70.0
MBI19_g47479_MAGBIO Magnolia biondii HOM05D003783 ORTHO05D004568 1.8e-76 290.4 171 87.1
BcaC09g49589 Brassica carinata HOM05D003783 ORTHO05D004568 1.1e-73 281.2 205 67.8
CAN.G1001.41 Capsicum annuum HOM05D003783 ORTHO05D004568 1.1e-73 281.2 249 57.8
Lsat_1_v5_gn_4_139080 Lactuca sativa HOM05D003783 ORTHO05D004568 3.2e-73 279.6 144 93.1
SEGI_30299 Sequoiadendron giganteum HOM05D003783 ORTHO05D004568 9.4e-73 278.1 323 55.1
Nitab4.5_0002589g0080 Nicotiana tabacum HOM05D003783 ORTHO05D004568 7.9e-72 275.0 242 62.4
Nitab4.5_0008535g0060 Nicotiana tabacum HOM05D003783 ORTHO05D004568 6.7e-71 271.9 149 89.3
BcaC09g49594 Brassica carinata HOM05D003783 ORTHO05D004568 4.8e-69 265.8 136 96.3
Sp3g25860 Schrenkiella parvula HOM05D003783 ORTHO05D004568 6.3e-69 265.4 130 93.8
C01p34860 Brassica napus HOM05D003783 ORTHO05D004568 8.2e-69 265.0 209 63.2
C01p34760 Brassica napus HOM05D003783 ORTHO05D004568 2.4e-68 263.5 209 63.6
Psat6g195120 Pisum sativum HOM05D003783 ORTHO05D004568 1.2e-67 261.2 330 47.9
BraSC177t45761Z Brassica rapa HOM05D003783 ORTHO05D004568 1.7e-66 257.3 126 93.7
BraSC48t46228Z Brassica rapa HOM05D003783 ORTHO05D004568 1.7e-66 257.3 126 93.7
BraSC48t46298Z Brassica rapa HOM05D003783 ORTHO05D004568 1.7e-66 257.3 126 93.7
BraSC48t46316Z Brassica rapa HOM05D003783 ORTHO05D004568 1.7e-66 257.3 126 93.7
AL3G44470 Arabidopsis lyrata HOM05D003783 ORTHO05D004568 6.7e-63 245.4 119 94.1
CARHR283230 Cardamine hirsuta HOM05D003783 ORTHO05D004568 6.7e-63 245.4 119 94.1
PSO782G0649 Papaver somniferum HOM05D003783 ORTHO05D004568 1.7e-61 240.7 208 62.0
DCAR_032038 Daucus carota HOM05D003783 ORTHO05D004568 8.2e-61 238.4 122 96.7
BolSC28t60306H Brassica oleracea HOM05D003783 ORTHO05D004568 4.1e-60 236.1 180 65.0
BolSC28t60363H Brassica oleracea HOM05D003783 ORTHO05D004568 4.1e-60 236.1 180 65.0
PSO135G0232 Papaver somniferum HOM05D003783 ORTHO05D004568 5.3e-60 235.7 208 61.1
PSO675G6716 Papaver somniferum HOM05D003783 ORTHO05D004568 3.8e-58 229.6 208 59.1
Nitab4.5_0004300g0270 Nicotiana tabacum HOM05D003783 ORTHO05D004568 5.2e-55 219.2 123 89.4
CAN.G1576.3 Capsicum annuum HOM05D003783 ORTHO05D004568 9.7e-54 214.9 130 83.1
Sc22g0004100 Simmondsia chinensis HOM05D003783 ORTHO05D004568 1.8e-52 210.7 118 87.3
Lsat_1_v5_gn_8_111800 Lactuca sativa HOM05D003783 ORTHO05D004568 4.5e-51 206.1 122 86.9
CARHR287240 Cardamine hirsuta HOM05D003783 ORTHO05D004568 7.7e-51 205.3 152 73.0
Lsat_1_v5_gn_5_16140 Lactuca sativa HOM05D003783 ORTHO05D004568 2.5e-49 200.3 123 83.7
Psat7g150720 Pisum sativum HOM05D003783 ORTHO05D004568 6.3e-45 185.7 107 88.8
SHI54813 Sapria himalayana HOM05D003783 ORTHO05D004568 1.2e-43 181.4 106 86.8
BraSC48t46252Z Brassica rapa HOM05D003783 ORTHO05D004568 1.0e-42 178.3 115 79.1
TPR.G885 Trifolium pratense HOM05D003783 ORTHO05D004568 2.2e-42 177.2 96 93.8
Nitab4.5_0002888g0030 Nicotiana tabacum HOM05D003783 ORTHO05D004568 1.4e-39 167.9 94 90.4
Nitab4.5_0000172g1380 Nicotiana tabacum HOM05D003783 ORTHO05D004568 1.8e-36 157.5 107 77.6
Solyc04g049870.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 1.6e-35 154.5 275 42.2
QL02p008127 Quercus lobata HOM05D003783 ORTHO05D004568 5.9e-35 152.5 75 97.3
Solyc11g063620.2 Solanum lycopersicum HOM05D003783 ORTHO05D004568 8.0e-32 142.1 85 87.1
Dinv06615 Davidia involucrata HOM05D003783 ORTHO05D011738 1.5e-30 137.9 65 100.0
CAN.G124.8 Capsicum annuum HOM05D003783 ORTHO05D004568 2.2e-29 134.0 93 75.3
CAN.G1439.8 Capsicum annuum HOM05D003783 ORTHO05D004568 2.9e-29 133.7 196 46.4
SHI32491 Sapria himalayana HOM05D003783 ORTHO05D004568 5.4e-28 129.4 163 48.5
Lalb_Chr11g0068271 Lupinus albus HOM05D003783 ORTHO05D004568 7.0e-28 129.0 69 85.5
HanXRQChr01g0013391 Helianthus annuus HOM05D003783 ORTHO05D004568 3.9e-26 123.2 60 95.0
BolC1t03452H Brassica oleracea HOM05D003783 ORTHO05D004568 8.6e-26 122.1 62 88.7
Lj2P1232T100 Lonicera japonica HOM05D003783 ORTHO05D004568 1.1e-25 121.7 58 96.6
Nitab4.5_0011099g0010 Nicotiana tabacum HOM05D003783 ORTHO05D004568 3.3e-25 120.2 62 91.9
Solyc02g050290.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 1.2e-22 111.7 74 77.0
CAN.G1439.6 Capsicum annuum HOM05D003783 ORTHO05D004568 2.0e-22 110.9 62 80.6
Ah.01g011720 Amaranthus hybridus HOM05D003783 ORTHO05D013694 4.6e-19 99.8 97 56.7
Nitab4.5_0002739g0140 Nicotiana tabacum HOM05D003783 ORTHO05D015637 6.0e-19 99.4 49 95.9
Solyc08g029270.2 Solanum lycopersicum HOM05D003783 ORTHO05D004568 1.0e-18 98.6 64 68.8
arahy.Tifrunner.gnm1.ann1.BUQ0M3 Arachis hypogaea HOM05D003783 ORTHO05D004568 1.3e-18 98.2 57 89.5
C05p22550 Brassica napus HOM05D003783 ORTHO05D004568 1.7e-18 97.8 60 81.7
TPR.G13188 Trifolium pratense HOM05D003783 ORTHO05D004568 8.6e-18 95.5 51 74.5
BolC5t30954H Brassica oleracea HOM05D003783 ORTHO05D004568 1.2e-16 91.7 60 78.3
Solyc06g065880.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 1.6e-16 91.3 115 48.7
AT2G07768 Arabidopsis thaliana HOM05D003783 ORTHO05D004568 1.8e-15 87.8 46 91.3
Nitab4.5_0005837g0060 Nicotiana tabacum HOM05D000102 ORTHO05D000138 2.3e-15 87.4 48 85.4
Solyc12g035895.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 6.8e-15 85.9 146 39.7
BraSC54t46361Z Brassica rapa HOM05D003783 ORTHO05D004568 8.9e-15 85.5 46 89.1
ClCG09G015160 Citrullus lanatus HOM05D003783 ORTHO05D004568 1.2e-14 85.1 47 87.2
Lalb_Chr22g0357821 Lupinus albus HOM05D003783 ORTHO05D004568 2.9e-13 80.5 58 60.3
SHI26671 Sapria himalayana HOM05D003783 ORTHO05D004568 3.7e-13 80.1 67 61.2
PGR028G0013 Punica granatum HOM05D003783 ORTHO05D004568 1.4e-12 78.2 46 87.0
SHI26672 Sapria himalayana HOM05D003783 ORTHO05D004568 2.4e-12 77.4 65 66.2
Solyc12g035910.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 2.4e-12 77.4 49 75.5
SHI28703 Sapria himalayana HOM05D003783 ORTHO05D004568 4.1e-12 76.6 63 61.9
BolC1t03443H Brassica oleracea HOM05D003783 ORTHO05D004568 2.1e-11 74.3 41 87.8
SHI11506 Sapria himalayana HOM05D003783 ORTHO05D004568 2.7e-11 73.9 47 74.5
SEGI_06792 Sequoiadendron giganteum HOM05D003783 ORTHO05D004568 2.7e-11 73.9 54 72.2
CAN.G1439.3 Capsicum annuum HOM05D002965 ORTHO05D010183 1.0e-10 72.0 50 64.0
Nitab4.5_0011099g0020 Nicotiana tabacum HOM05D003783 ORTHO05D004568 3.0e-10 70.5 37 83.8
Oeu008586.1 Olea europaea HOM05D003783 ORTHO05D004568 5.1e-10 69.7 41 80.5
Actinidia31963 Actinidia chinensis HOM05D000944 ORTHO05D003581 3.3e-09 67.0 53 64.2
Peaxi162Scf00720g00065 Petunia axillaris HOM05D003783 ORTHO05D004568 7.3e-09 65.9 34 85.3
Haze_23009 Corylus avellana HOM05D000230 ORTHO05D000176 2.1e-08 64.3 33 81.8
BolSC28t60416H Brassica oleracea HOM05D003783 ORTHO05D004568 3.1e-07 60.5 53 58.5
Peaxi162Scf00122g00087 Petunia axillaris HOM05D000216 ORTHO05D000634 3.1e-07 60.5 28 96.4
CAN.G60.11 Capsicum annuum HOM05D001322 ORTHO05D001301 5.2e-07 59.7 35 82.9
Nitab4.5_0000172g1260 Nicotiana tabacum HOM05D003783 ORTHO05D004568 2.0e-06 57.8 40 70.0
Aa31csc822G30 Aethionema arabicum HOM05D001987 ORTHO05D006514 7.6e-06 55.8 27 77.8
Ciclev10003580m.g Citrus clementina HOM05D003783 ORTHO05D004568 9.9e-06 55.5 71 47.9


User provided reference genes

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