Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv06703 Davidia involucrata HOM05D005794 ORTHO05D006814 3.0e-162 575.1 285 100.0
Actinidia34813 Actinidia chinensis HOM05D005794 ORTHO05D006814 1.7e-80 303.5 290 60.0
Actinidia34939 Actinidia chinensis HOM05D005794 ORTHO05D006814 1.7e-80 303.5 290 60.0
HanXRQMTg0579171 Helianthus annuus HOM05D005794 ORTHO05D006814 1.2e-78 297.4 150 96.7
Nn1g10154 Nelumbo nucifera HOM05D005794 ORTHO05D006814 2.7e-78 296.2 150 97.3
Lj2P1225T95 Lonicera japonica HOM05D005794 ORTHO05D006814 3.5e-78 295.8 150 97.3
Hma1.2p1_1338F.1_g276546 Hydrangea macrophylla HOM05D005794 ORTHO05D006814 4.6e-78 295.4 150 97.3
Solyc00g500303.1 Solanum lycopersicum HOM05D005794 ORTHO05D006814 3.9e-77 292.4 150 95.3
Sopen00g001030 Solanum pennellii HOM05D005794 ORTHO05D006814 3.9e-77 292.4 150 95.3
Sopen06g006940 Solanum pennellii HOM05D005794 ORTHO05D006814 3.9e-77 292.4 150 95.3
CDE02G1904 Ceratophyllum demersum HOM05D005794 ORTHO05D006814 1.1e-76 290.8 167 88.6
DCAR_032446 Daucus carota HOM05D005794 ORTHO05D006814 1.9e-76 290.0 150 95.3
LjContig00315g0011412 Lotus japonicus HOM05D005794 ORTHO05D006814 2.5e-76 289.7 150 95.3
Lalb_Chr00c24g0406721 Lupinus albus HOM05D005794 ORTHO05D006814 2.5e-76 289.7 150 95.3
RcHm_v2.0_Chr6g0257971 Rosa chinensis HOM05D005794 ORTHO05D006814 2.5e-76 289.7 150 95.3
RcHm_v2.0_MTg0498891 Rosa chinensis HOM05D005794 ORTHO05D006814 2.5e-76 289.7 150 95.3
Medtr0082s0160 Medicago truncatula HOM05D005794 ORTHO05D006814 3.3e-76 289.3 150 94.7
SGA_v2.0_scaffold575G53003 Striga asiatica HOM05D005794 ORTHO05D006814 4.3e-76 288.9 150 94.7
unitig_87.g28013 Utricularia gibba HOM05D005794 ORTHO05D006814 4.3e-76 288.9 150 94.7
Ca_28561_v3 Cicer arietinum L. HOM05D005794 ORTHO05D006814 7.3e-76 288.1 240 65.4
arahy.Tifrunner.gnm1.ann1.3CRZ8T Arachis hypogaea HOM05D005794 ORTHO05D006814 2.1e-75 286.6 150 94.7
arahy.Tifrunner.gnm1.ann1.KSB3D6 Arachis hypogaea HOM05D005794 ORTHO05D006814 2.1e-75 286.6 150 94.7
arahy.Tifrunner.gnm1.ann1.TM4QCS Arachis hypogaea HOM05D005794 ORTHO05D006814 2.1e-75 286.6 150 94.7
PGR028G0014 Punica granatum HOM05D005794 ORTHO05D006814 4.7e-75 285.4 150 94.0
arahy.Tifrunner.gnm1.ann1.R0J8GI Arachis hypogaea HOM05D005794 ORTHO05D006814 1.1e-74 284.3 150 94.0
arahy.Tifrunner.gnm1.ann1.Y4WQEL Arachis hypogaea HOM05D005794 ORTHO05D006814 1.1e-74 284.3 150 94.0
Glyma.12G155300 Glycine max HOM05D005794 ORTHO05D006814 1.4e-74 283.9 150 94.0
CsaV3_5G015890 Cucumis sativus L. HOM05D005794 ORTHO05D006814 2.4e-74 283.1 150 92.7
Lj3g0000092 Lotus japonicus HOM05D005794 ORTHO05D006814 3.1e-74 282.7 150 94.0
Duzib116G0905 Durio zibethinus HOM05D005794 ORTHO05D006814 2.6e-73 279.6 150 92.7
CANSAT16G0022 Cannabis sativa HOM05D005794 ORTHO05D006814 9.9e-73 277.7 150 92.0
Cpa.g.c32646 Carica papaya HOM05D005794 ORTHO05D006814 2.2e-72 276.6 150 92.0
Potri.007G062402 Populus trichocarpa HOM05D005794 ORTHO05D006814 2.9e-72 276.2 150 91.3
SabraMtG0005200 Salix brachista HOM05D005794 ORTHO05D006814 2.9e-72 276.2 150 91.3
AL5G20240 Arabidopsis lyrata HOM05D005794 ORTHO05D006814 6.4e-72 275.0 150 91.3
A04p09480 Brassica napus HOM05D005794 ORTHO05D006814 6.4e-72 275.0 150 91.3
BolSC28t60379H Brassica oleracea HOM05D005794 ORTHO05D006814 6.4e-72 275.0 150 91.3
BolSC28t60413H Brassica oleracea HOM05D005794 ORTHO05D006814 6.4e-72 275.0 150 91.3
BraSC48t46249Z Brassica rapa HOM05D005794 ORTHO05D006814 6.4e-72 275.0 150 91.3
BraSC54t46376Z Brassica rapa HOM05D005794 ORTHO05D006814 6.4e-72 275.0 150 91.3
BraSC77t46625Z Brassica rapa HOM05D005794 ORTHO05D006814 6.4e-72 275.0 150 91.3
CARHR283070 Cardamine hirsuta HOM05D005794 ORTHO05D006814 6.4e-72 275.0 150 91.3
Lj2P1227T94 Lonicera japonica HOM05D005794 ORTHO05D006814 6.4e-72 275.0 150 92.0
Sp3g25640 Schrenkiella parvula HOM05D005794 ORTHO05D006814 6.4e-72 275.0 150 91.3
Sabra04G0097400 Salix brachista HOM05D005794 ORTHO05D006814 8.4e-72 274.6 150 90.7
EL10Ac1g02199 Beta vulgaris HOM05D005794 ORTHO05D006814 1.1e-71 274.2 150 90.0
CsaV3_5G015960 Cucumis sativus L. HOM05D005794 ORTHO05D006814 1.4e-71 273.9 147 91.2
Zm00001eb384510 Zea mays HOM05D005794 ORTHO05D006814 1.9e-71 273.5 150 90.7
Zm00001eb437480 Zea mays HOM05D005794 ORTHO05D006814 1.9e-71 273.5 150 90.7
AT2G07687 Arabidopsis thaliana HOM05D005794 ORTHO05D006814 5.4e-71 271.9 150 90.7
ATMG00730 Arabidopsis thaliana HOM05D005794 ORTHO05D006814 5.4e-71 271.9 150 90.7
ECA039G0030 Erigeron canadensis HOM05D005794 ORTHO05D006814 1.0e-69 267.7 148 91.2
SHI15111 Sapria himalayana HOM05D005794 ORTHO05D006814 9.6e-68 261.2 149 85.9
Gorai.001G162400 Gossypium raimondii HOM05D005794 ORTHO05D006814 1.7e-64 250.4 131 93.9
SEGI_38498 Sequoiadendron giganteum HOM05D005794 ORTHO05D006814 2.9e-64 249.6 147 83.7
Lsat_1_v5_gn_0_2580 Lactuca sativa HOM05D005794 ORTHO05D006814 3.2e-63 246.1 150 84.0
Lsat_1_v5_gn_8_111680 Lactuca sativa HOM05D005794 ORTHO05D006814 3.2e-63 246.1 150 84.0
Thhalv10023004m.g Eutrema salsugineum HOM05D005794 ORTHO05D006814 5.4e-63 245.4 131 92.4
Lj1g0014382 Lotus japonicus HOM05D005794 ORTHO05D006814 2.1e-59 233.4 128 89.8
CsaV3_5G015820 Cucumis sativus L. HOM05D005794 ORTHO05D006814 3.7e-59 232.6 124 91.1
Sed0025732 Sechium edule HOM05D005794 ORTHO05D006814 6.9e-58 228.4 124 92.7
Medtr6g032895 Medicago truncatula HOM05D005794 ORTHO05D006814 1.4e-55 220.7 119 94.1
Ah.10g027990 Amaranthus hybridus HOM05D005794 ORTHO05D006814 7.1e-55 218.4 120 91.7
Ah.02g118920 Amaranthus hybridus HOM05D005794 ORTHO05D006814 1.0e-53 214.5 124 87.9
Nitab4.5_0008916g0010 Nicotiana tabacum HOM05D005794 ORTHO05D006814 1.9e-52 210.3 150 74.0
Zm00001eb434650 Zea mays HOM05D005794 ORTHO05D006814 5.6e-52 208.8 117 91.5
Zm00001eb434760 Zea mays HOM05D005794 ORTHO05D006814 5.6e-52 208.8 117 91.5
ATR0012G027 Amborella trichopoda HOM05D005794 ORTHO05D006814 3.7e-51 206.1 117 85.5
Gorai.013G213200 Gossypium raimondii HOM05D005794 ORTHO05D006814 8.2e-51 204.9 150 72.0
VMungo0720G2970 Vigna mungo HOM05D005794 ORTHO05D006814 1.8e-50 203.8 108 92.6
arahy.Tifrunner.gnm1.ann1.75B77C Arachis hypogaea HOM05D005794 ORTHO05D006814 3.1e-50 203.0 131 80.2
DCAR_029125 Daucus carota HOM05D005794 ORTHO05D006814 3.4e-49 199.5 108 93.5
Medtr0495s0020 Medicago truncatula HOM05D005794 ORTHO05D006814 4.5e-49 199.1 113 91.2
SalBow1G4628 Salvia bowleyana HOM05D005794 ORTHO05D006814 6.5e-48 195.3 106 93.4
Ah.10g028710 Amaranthus hybridus HOM05D005794 ORTHO05D006814 1.4e-47 194.1 107 91.6
Nitab4.5_0004100g0090 Nicotiana tabacum HOM05D009808 ORTHO05D006814 2.8e-43 179.9 139 69.1
Nitab4.5_0009256g0040 Nicotiana tabacum HOM05D005794 ORTHO05D006814 1.8e-42 177.2 96 92.7
Nitab4.5_0005637g0070 Nicotiana tabacum HOM05D005794 ORTHO05D006814 1.3e-35 154.5 90 86.7
Nitab4.5_0000886g0250 Nicotiana tabacum HOM05D005794 ORTHO05D006814 2.6e-33 146.7 157 54.1
Haze_26985 Corylus avellana HOM05D005794 ORTHO05D006814 1.3e-32 144.4 129 51.2
SHI37163 Sapria himalayana HOM05D005794 ORTHO05D006814 1.3e-32 144.4 73 93.2
Nitab4.5_0001788g0090 Nicotiana tabacum HOM05D005794 ORTHO05D006814 2.9e-32 143.3 83 88.0
VMungo0720G2880 Vigna mungo HOM05D005794 ORTHO05D006814 3.8e-32 142.9 82 89.0
Lsat_1_v5_gn_5_16240 Lactuca sativa HOM05D005794 ORTHO05D006814 2.5e-31 140.2 71 95.8
Nitab4.5_0000172g1250 Nicotiana tabacum HOM05D005794 ORTHO05D006814 8.8e-29 131.7 98 71.4
BraSC224t45812Z Brassica rapa HOM05D005794 ORTHO05D006814 1.7e-27 127.5 63 93.7
Nitab4.5_0003945g0100 Nicotiana tabacum HOM05D005794 ORTHO05D006814 3.1e-26 123.2 66 89.4
Nitab4.5_0004553g0080 Nicotiana tabacum HOM05D005794 ORTHO05D006814 4.1e-26 122.9 64 92.2
SHI35300 Sapria himalayana HOM05D005794 ORTHO05D006814 5.3e-26 122.5 74 81.1
Sed0001254 Sechium edule HOM05D005794 ORTHO05D006814 7.0e-26 122.1 67 91.0
Nitab4.5_0000172g0610 Nicotiana tabacum HOM05D005794 ORTHO05D006814 9.1e-26 121.7 79 79.7
SHI48376 Sapria himalayana HOM05D005794 ORTHO05D006814 2.6e-25 120.2 68 85.3
RhsimMtG0003200 Rhododendron simsii HOM05D007924 ORTHO05D010328 1.2e-22 111.3 95 68.4
MELO3C018157.2 Cucumis melo HOM05D005794 ORTHO05D006814 4.7e-22 109.4 57 91.2
SHI44549 Sapria himalayana HOM05D005794 ORTHO05D006814 1.4e-21 107.8 55 90.9
Nitab4.5_0002418g0190 Nicotiana tabacum HOM05D005794 ORTHO05D006814 1.8e-21 107.5 64 81.2
Nitab4.5_0003945g0050 Nicotiana tabacum HOM05D018533 ORTHO05D006814 5.2e-21 105.9 55 89.1
Nitab4.5_0001152g0840 Nicotiana tabacum HOM05D005794 ORTHO05D006814 1.3e-19 101.3 66 75.8
Solyc00g019730.1 Solanum lycopersicum HOM05D005794 ORTHO05D006814 3.7e-19 99.8 51 94.1
CAN.G1.2 Capsicum annuum HOM05D005794 ORTHO05D006814 8.2e-19 98.6 54 88.9
SMO310G0001 Selaginella moellendorffii HOM05D005794 ORTHO05D006814 8.2e-19 98.6 113 50.4
Lsat_1_v5_gn_5_16260 Lactuca sativa HOM05D005794 ORTHO05D006814 2.4e-18 97.1 64 76.6
SHI20513 Sapria himalayana HOM05D005794 ORTHO05D006814 3.1e-18 96.7 62 72.6
Nitab4.5_0000681g0270 Nicotiana tabacum HOM05D005794 ORTHO05D006814 2.5e-15 87.0 54 83.3
Nitab4.5_0002326g0060 Nicotiana tabacum HOM05D005794 ORTHO05D006814 3.2e-15 86.7 53 86.8
SHI14272 Sapria himalayana HOM05D005794 ORTHO05D006814 1.4e-13 81.3 61 62.3
TPR.G25412 Trifolium pratense HOM05D005794 ORTHO05D006814 8.8e-13 78.6 53 83.0
Duzib116G0892 Durio zibethinus HOM05D005794 ORTHO05D006814 9.7e-12 75.1 59 71.2
Cre04.g221700 Chlamydomonas reinhardtii HOM05D005794 ORTHO05D006814 6.3e-11 72.4 125 35.2
SHI14273 Sapria himalayana HOM05D005794 ORTHO05D006814 7.0e-10 68.9 65 56.9
Oeu030834.3 Olea europaea HOM05D005794 ORTHO05D006814 1.6e-09 67.8 53 67.9
SHI50742 Sapria himalayana HOM05D005794 ORTHO05D006814 2.0e-09 67.4 32 87.5
Psat0s4951g0040 Pisum sativum HOM05D005794 ORTHO05D006814 7.7e-09 65.5 85 47.1
SHI48878 Sapria himalayana HOM05D005794 ORTHO05D006814 1.1e-07 61.6 30 83.3
Nitab4.5_0002418g0170 Nicotiana tabacum HOM05D009000 ORTHO05D010659 1.9e-07 60.8 31 87.1
Nitab4.5_0004553g0100 Nicotiana tabacum HOM05D005794 ORTHO05D006814 1.6e-06 57.8 55 56.4
CSS0006210 Camellia sinensis var. sinensis HOM05D005794 ORTHO05D006814 2.7e-06 57.0 32 78.1
CSS0015180 Camellia sinensis var. sinensis HOM05D005794 ORTHO05D006814 8.0e-06 55.5 31 77.4


User provided reference genes

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