Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv06583 Davidia involucrata HOM05D002866 ORTHO05D008929 1.4e-59 232.6 113 100.0
Dinv06581 Davidia involucrata HOM05D002866 ORTHO05D008706 4.2e-35 151.4 74 97.3
vmacro22348 Vaccinium macrocarpon HOM05D002866 ORTHO05D008929 5.2e-33 144.4 73 93.2
Cfa013559 Carpinus fangiana HOM05D002866 ORTHO05D008929 1.5e-32 142.9 73 90.4
Haze_22179 Corylus avellana HOM05D002866 ORTHO05D000055 1.5e-32 142.9 75 88.0
RcHm_v2.0_Chr1g0373871 Rosa chinensis HOM05D002866 ORTHO05D008929 3.4e-32 141.7 73 89.0
CSS0005256 Camellia sinensis var. sinensis HOM05D002866 ORTHO05D008929 4.4e-32 141.4 73 90.4
CSS0048324 Camellia sinensis var. sinensis HOM05D002866 ORTHO05D008929 4.4e-32 141.4 73 90.4
FvH4_7g27050 Fragaria vesca HOM05D002866 ORTHO05D008929 7.5e-32 140.6 73 87.7
FAN10G2637 Fragaria x ananassa HOM05D002866 ORTHO05D008929 7.5e-32 140.6 73 87.7
QL05p020902 Quercus lobata HOM05D002866 ORTHO05D008929 9.8e-32 140.2 72 88.9
FAN06G4646 Fragaria x ananassa HOM05D002866 ORTHO05D008929 1.3e-31 139.8 107 64.5
Rhsim03G0162900 Rhododendron simsii HOM05D002866 ORTHO05D008929 1.3e-31 139.8 73 90.4
MD07G1250300 Malus domestica HOM05D002866 ORTHO05D008929 2.8e-31 138.7 73 89.0
Nn6g33860 Nelumbo nucifera HOM05D002866 ORTHO05D008929 3.7e-31 138.3 73 84.9
PGR042G0411 Punica granatum HOM05D002866 ORTHO05D008929 3.7e-31 138.3 73 84.9
Actinidia13601 Actinidia chinensis HOM05D002866 ORTHO05D008929 4.9e-31 137.9 72 87.5
Lj1A976T81 Lonicera japonica HOM05D002866 ORTHO05D008929 4.9e-31 137.9 71 90.1
Prupe.2G273700 Prunus persica HOM05D002866 ORTHO05D008929 6.3e-31 137.5 73 87.7
Atru.chr1.858_Atru.chr1.859 Acer truncatum HOM05D002866 ORTHO05D008929 8.3e-31 137.1 73 87.7
QL05p021044 Quercus lobata HOM05D002866 ORTHO05D008929 1.4e-30 136.3 72 87.5
Thecc.03G150200 Theobroma cacao HOM05D002866 ORTHO05D008929 1.4e-30 136.3 73 86.3
CiPaw.07G051200 Carya illinoinensis HOM05D002866 ORTHO05D008929 1.8e-30 136.0 73 86.3
Actinidia24979 Actinidia chinensis HOM05D002866 ORTHO05D008929 3.1e-30 135.2 73 86.3
Aqoxy3G02801 Aquilegia oxysepala HOM05D002866 ORTHO05D008929 3.1e-30 135.2 73 86.3
Sabra14G0144000 Salix brachista HOM05D002866 ORTHO05D008929 3.1e-30 135.2 73 84.9
TAR629G2248 Trochodendron aralioides HOM05D002866 ORTHO05D008929 3.1e-30 135.2 73 87.7
Migut.F01192 Erythranthe guttata HOM05D002866 ORTHO05D008929 4.1e-30 134.8 72 84.7
Oeu021694.1 Olea europaea HOM05D002866 ORTHO05D008929 4.1e-30 134.8 72 86.1
Peaxi162Scf00271g00827 Petunia axillaris HOM05D002866 ORTHO05D008929 4.1e-30 134.8 73 82.2
Cc02_g04590 Coffea canephora HOM05D002866 ORTHO05D008929 5.4e-30 134.4 73 83.6
FAN03G0702 Fragaria x ananassa HOM05D002866 ORTHO05D008929 7.0e-30 134.0 73 84.9
PSO063G6150 Papaver somniferum HOM05D002866 ORTHO05D008929 9.2e-30 133.7 73 82.2
Sopen03g024270 Solanum pennellii HOM05D002866 ORTHO05D008929 9.2e-30 133.7 72 81.9
Lsat_1_v5_gn_2_127761 Lactuca sativa HOM05D002866 ORTHO05D008929 1.6e-29 132.9 73 83.6
TWI14G1303 Tripterygium wilfordii HOM05D002866 ORTHO05D008929 1.6e-29 132.9 73 83.6
GSVIVG01013991001 Vitis vinifera HOM05D002866 ORTHO05D008929 1.6e-29 132.9 73 82.2
GSVIVG01013998001 Vitis vinifera HOM05D002866 ORTHO05D008929 1.6e-29 132.9 73 82.2
COL.COLO4_14062 Corchorus olitorius HOM05D002866 ORTHO05D008929 2.7e-29 132.1 73 82.2
Manes.06G132400 Manihot esculenta HOM05D002866 ORTHO05D008929 2.7e-29 132.1 73 84.9
PGSC0003DMG400018851 Solanum tuberosum HOM05D002866 ORTHO05D008929 2.7e-29 132.1 72 80.6
Cpa.g.sc13.272 Carica papaya HOM05D002866 ORTHO05D008929 3.5e-29 131.7 73 83.6
Duzib084G0424 Durio zibethinus HOM05D002866 ORTHO05D008929 3.5e-29 131.7 73 82.2
Gohir.A12G197100 Gossypium hirsutum HOM05D002866 ORTHO05D008929 3.5e-29 131.7 73 82.2
Gohir.D12G199700 Gossypium hirsutum HOM05D002866 ORTHO05D008929 3.5e-29 131.7 73 82.2
Gorai.008G214900 Gossypium raimondii HOM05D002866 ORTHO05D008929 3.5e-29 131.7 73 82.2
Potri.014G191900 Populus trichocarpa HOM05D002866 ORTHO05D008929 3.5e-29 131.7 73 84.9
AUR62002233 Chenopodium quinoa HOM05D002866 ORTHO05D008929 4.5e-29 131.3 72 81.9
ECA238G1321 Erigeron canadensis HOM05D002866 ORTHO05D008929 5.9e-29 131.0 73 80.8
SGA_v2.0_scaffold56G19920 Striga asiatica HOM05D002866 ORTHO05D008929 5.9e-29 131.0 76 84.2
Sed0016729 Sechium edule HOM05D002866 ORTHO05D008929 7.8e-29 130.6 73 82.2
CANSAT56G0775 Cannabis sativa HOM05D002866 ORTHO05D008929 1.0e-28 130.2 72 83.3
Nitab4.5_0002346g0020 Nicotiana tabacum HOM05D002866 ORTHO05D008929 1.0e-28 130.2 73 82.2
THA.LOC104818311 Tarenaya hassleriana HOM05D002866 ORTHO05D008929 1.0e-28 130.2 72 83.3
EL10Ac3g05868 Beta vulgaris HOM05D002866 ORTHO05D008929 1.3e-28 129.8 72 81.9
AUR62015445 Chenopodium quinoa HOM05D002866 ORTHO05D008929 1.3e-28 129.8 72 80.6
HanXRQChr14g0461261 Helianthus annuus HOM05D002866 ORTHO05D008929 1.3e-28 129.8 73 83.6
SalBow2G0523 Salvia bowleyana HOM05D002866 ORTHO05D008929 1.3e-28 129.8 72 83.3
Hund11850 Selenicereus undatus HOM05D002866 ORTHO05D008929 1.3e-28 129.8 72 80.6
Sc13g0007920 Simmondsia chinensis HOM05D002866 ORTHO05D008929 1.3e-28 129.8 72 83.3
Solyc03g093440.4 Solanum lycopersicum HOM05D002866 ORTHO05D008929 1.3e-28 129.8 70 81.4
unitig_60.g25662 Utricularia gibba HOM05D002866 ORTHO05D008929 1.3e-28 129.8 72 79.2
MBI04_g34103_MAGBIO Magnolia biondii HOM05D002866 ORTHO05D008929 2.3e-28 129.0 73 83.6
Phvul.005G009200 Phaseolus vulgaris HOM05D002866 ORTHO05D008929 3.8e-28 128.3 72 79.2
Lj3g0001933 Lotus japonicus HOM05D002866 ORTHO05D008929 5.0e-28 127.9 73 79.5
CAN.G485.17 Capsicum annuum HOM05D002866 ORTHO05D008929 8.6e-28 127.1 72 76.4
Glyma.06G317300 Glycine max HOM05D002866 ORTHO05D008929 8.6e-28 127.1 73 78.1
TPR.G12157 Trifolium pratense HOM05D002866 ORTHO05D008929 8.6e-28 127.1 73 79.5
Psat5g228760 Pisum sativum HOM05D002866 ORTHO05D008929 1.1e-27 126.7 73 82.2
A03p47120 Brassica napus HOM05D002866 ORTHO05D008929 1.5e-27 126.3 73 79.5
BraA03t13840Z Brassica rapa HOM05D002866 ORTHO05D008929 1.5e-27 126.3 73 79.5
Ca_14047_v3 Cicer arietinum L. HOM05D002866 ORTHO05D008929 1.9e-27 125.9 73 78.1
C07p45230 Brassica napus HOM05D002866 ORTHO05D008929 4.3e-27 124.8 73 78.1
BolC7t45046H Brassica oleracea HOM05D002866 ORTHO05D008929 4.3e-27 124.8 73 78.1
Ciclev10005302m.g Citrus clementina HOM05D002866 ORTHO05D008929 4.3e-27 124.8 73 78.1
CsaV3_4G004140 Cucumis sativus L. HOM05D002866 ORTHO05D008929 4.3e-27 124.8 73 79.5
Medtr3g008180 Medicago truncatula HOM05D002866 ORTHO05D008929 5.6e-27 124.4 73 78.1
VMungo1080G1351 Vigna mungo HOM05D002866 ORTHO05D008929 5.6e-27 124.4 73 76.7
AL8G38240 Arabidopsis lyrata HOM05D002866 ORTHO05D008929 7.3e-27 124.0 73 78.1
Eucgr.A02913 Eucalyptus grandis HOM05D002866 ORTHO05D008929 7.3e-27 124.0 72 77.8
Ah.07g207570 Amaranthus hybridus HOM05D002866 ORTHO05D008929 9.5e-27 123.6 72 75.0
Zm00001eb074820 Zea mays HOM05D002866 ORTHO05D008929 9.5e-27 123.6 73 79.5
Carub.0008s2223 Capsella rubella HOM05D002866 ORTHO05D008929 1.2e-26 123.2 73 79.5
Os04g0549300 Oryza sativa ssp. japonica HOM05D002866 ORTHO05D008929 2.8e-26 122.1 73 79.5
HPP92_021029 Vanilla planifolia HOM05D002866 ORTHO05D008929 3.6e-26 121.7 73 76.7
HPP92_027439 Vanilla planifolia HOM05D002866 ORTHO05D008929 3.6e-26 121.7 73 78.1
CARHR275310 Cardamine hirsuta HOM05D002866 ORTHO05D008929 4.7e-26 121.3 73 78.1
Hund11848 Selenicereus undatus HOM05D002866 ORTHO05D008929 4.7e-26 121.3 66 83.3
AT5G61540 Arabidopsis thaliana HOM05D002866 ORTHO05D008929 6.1e-26 120.9 73 76.7
Thhalv10004474m.g Eutrema salsugineum HOM05D002866 ORTHO05D008929 8.0e-26 120.6 73 78.1
Aa31LG11G1880 Aethionema arabicum HOM05D002866 ORTHO05D008929 4.0e-25 118.2 71 76.1
GSVIVG01013994001 Vitis vinifera HOM05D002866 ORTHO05D008929 4.0e-25 118.2 68 79.4
Sp2g24740 Schrenkiella parvula HOM05D002866 ORTHO05D008929 6.8e-25 117.5 73 76.7
Nitab4.5_0001267g0010 Nicotiana tabacum HOM05D002866 ORTHO05D008929 1.2e-24 116.7 62 83.9
Lalb_Chr15g0079681 Lupinus albus HOM05D002866 ORTHO05D008929 2.6e-24 115.5 73 74.0
SMO115G0123 Selaginella moellendorffii HOM05D002866 ORTHO05D008929 9.8e-24 113.6 72 73.6
CBR_g51802 Chara braunii HOM05D002866 ORTHO05D000301 1.3e-23 113.2 72 70.8
AL365U10020 Arabidopsis lyrata HOM05D002866 ORTHO05D008929 2.2e-23 112.5 67 76.1
Mapoly0043s0091 Marchantia polymorpha HOM05D002866 ORTHO05D008929 3.7e-23 111.7 72 68.1
AagrBONN_evm.TU.Sc2ySwM_228.4013 Anthoceros agrestis HOM05D002866 ORTHO05D008929 9.2e-22 107.1 72 68.1
Pp3c27_3290 Physcomitrium patens HOM05D002866 ORTHO05D008929 2.0e-21 105.9 72 66.7
FAN01G2533 Fragaria x ananassa HOM05D002866 ORTHO05D008929 1.3e-20 103.2 53 88.7
arahy.Tifrunner.gnm1.ann1.DW86GH Arachis hypogaea HOM05D002866 ORTHO05D008929 1.1e-09 67.0 44 68.2


User provided reference genes

Program Settings