Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv06323 Davidia involucrata HOM05D000563 ORTHO05D000536 3.0e-57 224.9 114 100.0
Dinv06317 Davidia involucrata HOM05D000563 ORTHO05D000536 5.4e-46 187.6 149 69.8
Dinv11353 Davidia involucrata HOM05D000563 ORTHO05D000536 2.1e-21 105.9 108 61.1
TAR623G1660 Trochodendron aralioides HOM05D000563 ORTHO05D002677 9.9e-16 87.0 108 50.9
CSS0033673 Camellia sinensis var. sinensis HOM05D000563 ORTHO05D000536 2.2e-15 85.9 108 51.9
Cpa.g.sc161.29 Carica papaya HOM05D000563 ORTHO05D000536 4.9e-15 84.7 108 46.3
GSVIVG01029981001 Vitis vinifera HOM05D000563 ORTHO05D000536 1.1e-14 83.6 108 49.1
Hma1.2p1_0385F.1_g141550 Hydrangea macrophylla HOM05D000563 ORTHO05D000536 1.9e-14 82.8 108 49.1
Thecc.05G243100 Theobroma cacao HOM05D000563 ORTHO05D000536 5.4e-14 81.3 108 45.4
TAR636G3518 Trochodendron aralioides HOM05D000563 ORTHO05D000536 7.1e-14 80.9 106 50.0
Actinidia16539 Actinidia chinensis HOM05D000563 ORTHO05D000536 9.3e-14 80.5 108 47.2
Aqoxy1G00520 Aquilegia oxysepala HOM05D000563 ORTHO05D000536 1.2e-13 80.1 108 47.2
Gohir.D11G241800 Gossypium hirsutum HOM05D000563 ORTHO05D000536 1.2e-13 80.1 105 47.6
Gorai.007G255900 Gossypium raimondii HOM05D000563 ORTHO05D000536 1.2e-13 80.1 105 47.6
Ciclev10020215m.g Citrus clementina HOM05D000563 ORTHO05D000536 6.0e-13 77.8 108 46.3
Gohir.A11G230000 Gossypium hirsutum HOM05D000563 ORTHO05D000536 6.0e-13 77.8 105 46.7
GSVIVG01037518001 Vitis vinifera HOM05D000563 ORTHO05D000536 6.0e-13 77.8 106 48.1
Dinv32127 Davidia involucrata HOM05D000563 ORTHO05D000536 1.3e-12 76.6 106 50.0
Sed0014760 Sechium edule HOM05D000563 ORTHO05D000536 1.8e-12 76.3 106 45.3
TPR.G17877 Trifolium pratense HOM05D000563 ORTHO05D000536 1.8e-12 76.3 108 44.4
PSO384G1154 Papaver somniferum HOM05D000563 ORTHO05D000536 2.3e-12 75.9 108 46.3
PSO339G6634 Papaver somniferum HOM05D000563 ORTHO05D000536 3.9e-12 75.1 108 45.4
QL01p007331 Quercus lobata HOM05D000563 ORTHO05D000536 5.1e-12 74.7 106 47.2
Haze_20428 Corylus avellana HOM05D000563 ORTHO05D000536 6.7e-12 74.3 105 42.9
TWI75G0349 Tripterygium wilfordii HOM05D000563 ORTHO05D000536 6.7e-12 74.3 108 44.4
Hma1.2p1_0218F.1_g092490 Hydrangea macrophylla HOM05D000563 ORTHO05D000536 1.9e-11 72.8 106 48.1
Peaxi162Scf00978g00217 Petunia axillaris HOM05D000563 ORTHO05D000536 1.9e-11 72.8 108 43.5
Atru.chr3.2912 Acer truncatum HOM05D000563 ORTHO05D000536 2.5e-11 72.4 108 44.4
MD14G1007300 Malus domestica HOM05D000563 ORTHO05D000536 2.5e-11 72.4 108 43.5
Sc22g0003210 Simmondsia chinensis HOM05D000563 ORTHO05D000536 2.5e-11 72.4 108 39.8
Manes.04G056600 Manihot esculenta HOM05D000563 ORTHO05D000536 3.3e-11 72.0 108 43.5
arahy.Tifrunner.gnm1.ann1.5RUK5M Arachis hypogaea HOM05D000563 ORTHO05D000536 5.6e-11 71.2 108 42.6
arahy.Tifrunner.gnm1.ann1.877CYK Arachis hypogaea HOM05D000563 ORTHO05D000536 5.6e-11 71.2 108 42.6
CSS0045730 Camellia sinensis var. sinensis HOM05D000563 ORTHO05D000536 5.6e-11 71.2 104 48.1
Phvul.001G104500 Phaseolus vulgaris HOM05D000563 ORTHO05D000536 5.6e-11 71.2 108 42.6
ATR0697G008 Amborella trichopoda HOM05D000563 ORTHO05D000536 7.4e-11 70.9 104 43.3
MD12G1010200 Malus domestica HOM05D000563 ORTHO05D000536 7.4e-11 70.9 108 42.6
CAN.G280.9 Capsicum annuum HOM05D000563 ORTHO05D000536 9.6e-11 70.5 108 42.6
Potri.004G194200 Populus trichocarpa HOM05D000563 ORTHO05D000536 9.6e-11 70.5 108 42.6
Rhsim13G0200100 Rhododendron simsii HOM05D000563 ORTHO05D000536 9.6e-11 70.5 105 47.6
Atru.chr2.1500 Acer truncatum HOM05D000563 ORTHO05D000536 1.3e-10 70.1 108 44.4
CAN.G651.14 Capsicum annuum HOM05D000563 ORTHO05D000536 1.3e-10 70.1 108 46.3
Migut.D00709 Erythranthe guttata HOM05D000563 ORTHO05D000536 1.3e-10 70.1 104 46.2
Sabra09G0122600 Salix brachista HOM05D000563 ORTHO05D000536 1.3e-10 70.1 109 43.1
TWI79G0882 Tripterygium wilfordii HOM05D000563 ORTHO05D000536 1.3e-10 70.1 108 43.5
PGSC0003DMG400027397 Solanum tuberosum HOM05D000563 ORTHO05D000536 1.6e-10 69.7 108 44.4
SGA_v2.0_scaffold29G12128 Striga asiatica HOM05D000563 ORTHO05D000536 2.1e-10 69.3 106 45.3
AUR62020180 Chenopodium quinoa HOM05D000563 ORTHO05D000536 2.8e-10 68.9 106 41.5
Nn2g14546 Nelumbo nucifera HOM05D000563 ORTHO05D000536 2.8e-10 68.9 112 42.0
SGA_v2.0_scaffold8G04511 Striga asiatica HOM05D000563 ORTHO05D000536 2.8e-10 68.9 106 46.2
TWI60G0467 Tripterygium wilfordii HOM05D000563 ORTHO05D000536 2.8e-10 68.9 108 43.5
AUR62001599 Chenopodium quinoa HOM05D000563 ORTHO05D000536 3.6e-10 68.6 106 41.5
Ciclev10015761m.g Citrus clementina HOM05D000563 ORTHO05D000536 3.6e-10 68.6 110 43.6
Solyc11g072070.3 Solanum lycopersicum HOM05D000563 ORTHO05D000536 3.6e-10 68.6 108 43.5
Sopen11g029720 Solanum pennellii HOM05D000563 ORTHO05D000536 3.6e-10 68.6 108 43.5
VMungo1383G0126 Vigna mungo HOM05D000563 ORTHO05D000536 3.6e-10 68.6 108 41.7
Duzib177G0282 Durio zibethinus HOM05D000563 ORTHO05D000536 4.8e-10 68.2 71 53.5
Glyma.16G036400 Glycine max HOM05D000563 ORTHO05D000536 4.8e-10 68.2 108 41.7
Glyma.19G116300 Glycine max HOM05D000563 ORTHO05D000536 4.8e-10 68.2 108 41.7
COL.COLO4_25303 Corchorus olitorius HOM05D000563 ORTHO05D000536 8.1e-10 67.4 108 41.7
Manes.08G153800 Manihot esculenta HOM05D000563 ORTHO05D000536 8.1e-10 67.4 72 54.2
Peaxi162Scf00050g02418 Petunia axillaris HOM05D000563 ORTHO05D000536 8.1e-10 67.4 108 45.4
Hund10751 Selenicereus undatus HOM05D000563 ORTHO05D000536 8.1e-10 67.4 108 39.8
TWI34G1538 Tripterygium wilfordii HOM05D000563 ORTHO05D000536 8.1e-10 67.4 108 42.6
Cc01_g07430 Coffea canephora HOM05D000563 ORTHO05D000536 1.1e-09 67.0 106 47.2
Duzib128G1634 Durio zibethinus HOM05D000563 ORTHO05D000536 1.1e-09 67.0 71 52.1
ECA240G1632 Erigeron canadensis HOM05D000563 ORTHO05D000536 1.1e-09 67.0 107 46.7
HanXRQChr03g0090761 Helianthus annuus HOM05D000563 ORTHO05D000536 1.1e-09 67.0 107 46.7
Oeu025954.1 Olea europaea HOM05D000563 ORTHO05D000536 1.1e-09 67.0 124 39.5
Potri.009G156500 Populus trichocarpa HOM05D000563 ORTHO05D000536 1.1e-09 67.0 109 42.2
Potri.001G184200 Populus trichocarpa HOM05D000563 ORTHO05D000536 1.8e-09 66.2 109 41.3
CSS0041659 Camellia sinensis var. sinensis HOM05D000563 ORTHO05D000536 4.0e-09 65.1 104 47.1
EL10Ac7g16238 Beta vulgaris HOM05D000563 ORTHO05D000536 5.3e-09 64.7 106 40.6
Oeu032065.1 Olea europaea HOM05D000563 ORTHO05D000536 5.3e-09 64.7 106 43.4
BcaC09g47757 Brassica carinata HOM05D000563 ORTHO05D000536 9.0e-09 63.9 110 40.0
BolC1t05812H Brassica oleracea HOM05D000563 ORTHO05D000536 9.0e-09 63.9 110 40.0
COL.COLO4_28630 Corchorus olitorius HOM05D000563 ORTHO05D000536 9.0e-09 63.9 71 52.1
ECA233G2148 Erigeron canadensis HOM05D000563 ORTHO05D000536 9.0e-09 63.9 105 41.9
Lsat_1_v5_gn_2_38680 Lactuca sativa HOM05D000563 ORTHO05D000536 9.0e-09 63.9 108 41.7
unitig_27.g25019 Utricularia gibba HOM05D000563 ORTHO05D000536 9.0e-09 63.9 106 43.4
MSTRG.17653 Avicennia marina HOM05D000563 ORTHO05D000536 1.2e-08 63.5 105 41.9
Dinv05243 Davidia involucrata HOM05D000563 ORTHO05D000536 1.2e-08 63.5 68 57.4
FAN19G3010 Fragaria x ananassa HOM05D000563 ORTHO05D000536 1.5e-08 63.2 107 42.1
FAN23G0253 Fragaria x ananassa HOM05D000563 ORTHO05D000536 1.5e-08 63.2 107 42.1
FAN28G2307 Fragaria x ananassa HOM05D000563 ORTHO05D000536 1.5e-08 63.2 107 42.1
Lsat_1_v5_gn_3_113460 Lactuca sativa HOM05D000563 ORTHO05D000536 1.5e-08 63.2 107 44.9
FAN26G3181 Fragaria x ananassa HOM05D000563 ORTHO05D000536 2.0e-08 62.8 107 42.1
Medtr7g086500 Medicago truncatula HOM05D000563 ORTHO05D000536 2.0e-08 62.8 72 51.4
THA.LOC104802881 Tarenaya hassleriana HOM05D000563 ORTHO05D000536 2.0e-08 62.8 108 39.8
vmacro04065 Vaccinium macrocarpon HOM05D000563 ORTHO05D000536 2.0e-08 62.8 129 38.8
A01p41380 Brassica napus HOM05D000563 ORTHO05D000536 2.6e-08 62.4 110 39.1
BNapus_Darmor_BZH_scaffold_78p00330 Brassica napus HOM05D000563 ORTHO05D000536 2.6e-08 62.4 110 39.1
BraA01t04562Z Brassica rapa HOM05D000563 ORTHO05D000536 2.6e-08 62.4 110 39.1
HanXRQChr13g0418871 Helianthus annuus HOM05D000563 ORTHO05D000536 2.6e-08 62.4 106 43.4
Medtr5g087500 Medicago truncatula HOM05D000563 ORTHO05D000536 2.6e-08 62.4 106 40.6
PSO063G2249 Papaver somniferum HOM05D000563 ORTHO05D000536 2.6e-08 62.4 71 52.1
PSO339G6203 Papaver somniferum HOM05D000563 ORTHO05D000536 2.6e-08 62.4 71 52.1
AL3G13550 Arabidopsis lyrata HOM05D000563 ORTHO05D000536 3.4e-08 62.0 109 39.4
AT3G03740 Arabidopsis thaliana HOM05D000563 ORTHO05D000536 3.4e-08 62.0 109 39.4
CARHR077790 Cardamine hirsuta HOM05D000563 ORTHO05D000536 3.4e-08 62.0 109 39.4
Thhalv10020746m.g Eutrema salsugineum HOM05D000563 ORTHO05D000536 4.5e-08 61.6 110 39.1
unitig_22.g5687 Utricularia gibba HOM05D000563 ORTHO05D000536 4.5e-08 61.6 110 40.9
Carub.0003s0290 Capsella rubella HOM05D000563 ORTHO05D000536 7.6e-08 60.8 109 39.4
Lj2A917G48 Lonicera japonica HOM05D000563 ORTHO05D000536 7.6e-08 60.8 108 43.5
Lj2A896G46 Lonicera japonica HOM05D000563 ORTHO05D000536 1.3e-07 60.1 105 44.8
Psat3g087200 Pisum sativum HOM05D000563 ORTHO05D000536 1.3e-07 60.1 69 53.6
Potri.019G039500 Populus trichocarpa HOM05D000563 ORTHO05D000536 1.3e-07 60.1 72 50.0
QL07p018035 Quercus lobata HOM05D000563 ORTHO05D000536 1.3e-07 60.1 71 46.5
Hund20975 Selenicereus undatus HOM05D000563 ORTHO05D000536 1.3e-07 60.1 108 38.9
TPR.G11682 Trifolium pratense HOM05D000563 ORTHO05D000536 1.3e-07 60.1 107 39.3
DCAR_031607 Daucus carota HOM05D000563 ORTHO05D000536 1.7e-07 59.7 106 42.5
Glyma.16G036700 Glycine max HOM05D000563 ORTHO05D000536 1.7e-07 59.7 107 38.3
Glyma.19G058700 Glycine max HOM05D000563 ORTHO05D000536 1.7e-07 59.7 109 35.8
unitig_699.g19159 Utricularia gibba HOM05D000563 ORTHO05D000536 1.7e-07 59.7 104 42.3
HanXRQChr14g0432171 Helianthus annuus HOM05D000563 ORTHO05D000536 2.2e-07 59.3 106 41.5
Prupe.7G012100 Prunus persica HOM05D000563 ORTHO05D000536 2.2e-07 59.3 71 49.3
CANSAT54G1779 Cannabis sativa HOM05D000563 ORTHO05D000536 2.9e-07 58.9 108 39.8
Phvul.001G104400 Phaseolus vulgaris HOM05D000563 ORTHO05D000536 2.9e-07 58.9 101 39.6
Psat2g023120 Pisum sativum HOM05D000563 ORTHO05D000536 2.9e-07 58.9 108 38.9
RcHm_v2.0_Chr3g0496191 Rosa chinensis HOM05D000563 ORTHO05D000536 3.8e-07 58.5 71 49.3
Sc21g0006560 Simmondsia chinensis HOM05D000563 ORTHO05D000536 4.9e-07 58.2 70 48.6
THA.LOC104820791 Tarenaya hassleriana HOM05D000563 ORTHO05D000536 4.9e-07 58.2 106 38.7
Aa31LG5G14240 Aethionema arabicum HOM05D000563 ORTHO05D000536 6.4e-07 57.8 109 37.6
arahy.Tifrunner.gnm1.ann1.45EZXP Arachis hypogaea HOM05D000563 ORTHO05D000536 6.4e-07 57.8 108 38.9
Glyma.14G045500 Glycine max HOM05D000563 ORTHO05D000536 6.4e-07 57.8 104 38.5
Glyma.19G058200 Glycine max HOM05D000563 ORTHO05D000536 6.4e-07 57.8 108 35.2
Sp3g02710 Schrenkiella parvula HOM05D000563 ORTHO05D000536 6.4e-07 57.8 109 37.6
Ca_08308_v3 Cicer arietinum L. HOM05D000563 ORTHO05D000536 8.4e-07 57.4 69 52.2
Nitab4.5_0002300g0090 Nicotiana tabacum HOM05D000563 ORTHO05D000536 8.4e-07 57.4 71 54.9
CiPaw.09G167500 Carya illinoinensis HOM05D000563 ORTHO05D000536 1.1e-06 57.0 71 43.7
Ca_06139_v3 Cicer arietinum L. HOM05D000563 ORTHO05D000536 1.1e-06 57.0 106 38.7
Os03g0792500 Oryza sativa ssp. japonica HOM05D000563 ORTHO05D000536 1.1e-06 57.0 116 36.2
Glyma.02G272800 Glycine max HOM05D000563 ORTHO05D000536 1.4e-06 56.6 104 37.5
arahy.Tifrunner.gnm1.ann1.AKSW6P Arachis hypogaea HOM05D000563 ORTHO05D000536 1.9e-06 56.2 108 38.9
Zm00001eb213160 Zea mays HOM05D000563 ORTHO05D000536 2.4e-06 55.8 116 35.3
Actinidia12895 Actinidia chinensis HOM05D000563 ORTHO05D000536 3.2e-06 55.5 68 51.5
MELO3C008850.2 Cucumis melo HOM05D000563 ORTHO05D000536 3.2e-06 55.5 71 45.1
CsaV3_4G011970 Cucumis sativus L. HOM05D000563 ORTHO05D000536 3.2e-06 55.5 71 45.1
Gohir.A13G221500 Gossypium hirsutum HOM05D000563 ORTHO05D000536 3.2e-06 55.5 47 66.0
LjContig00564g0021617 Lotus japonicus HOM05D000563 ORTHO05D000536 3.2e-06 55.5 104 38.5
Lalb_Chr10g0105811 Lupinus albus HOM05D000563 ORTHO05D000536 3.2e-06 55.5 103 38.8
Lalb_Chr14g0364811 Lupinus albus HOM05D000563 ORTHO05D000536 3.2e-06 55.5 71 47.9
Zm00001eb060340 Zea mays HOM05D000563 ORTHO05D000536 3.2e-06 55.5 116 34.5
Atru.chr4.2592 Acer truncatum HOM05D000563 ORTHO05D000536 4.2e-06 55.1 78 48.7
Gohir.D13G225500 Gossypium hirsutum HOM05D000563 ORTHO05D000536 4.2e-06 55.1 47 66.0
Gorai.013G256300 Gossypium raimondii HOM05D000563 ORTHO05D000536 4.2e-06 55.1 47 66.0
Sed0006586 Sechium edule HOM05D000563 ORTHO05D000536 4.2e-06 55.1 106 38.7
CDE02G4075 Ceratophyllum demersum HOM05D000563 ORTHO05D000536 5.5e-06 54.7 106 37.7
Nitab4.5_0000428g0100 Nicotiana tabacum HOM05D000563 ORTHO05D000536 5.5e-06 54.7 71 50.7
Os07g0167200 Oryza sativa ssp. japonica HOM05D000563 ORTHO05D000536 5.5e-06 54.7 115 35.7
Solyc01g009060.3 Solanum lycopersicum HOM05D000563 ORTHO05D000536 5.5e-06 54.7 47 68.1
Sopen01g004550 Solanum pennellii HOM05D000563 ORTHO05D000536 5.5e-06 54.7 47 68.1
ClCG03G014380 Citrullus lanatus HOM05D000563 ORTHO05D000536 7.1e-06 54.3 106 37.7
ClCG04G004580 Citrullus lanatus HOM05D000563 ORTHO05D000536 7.1e-06 54.3 71 43.7
Duzib168G0305 Durio zibethinus HOM05D000563 ORTHO05D000536 7.1e-06 54.3 47 63.8
Lj1g0011818 Lotus japonicus HOM05D000563 ORTHO05D000536 7.1e-06 54.3 69 52.2
PGSC0003DMG400022701 Solanum tuberosum HOM05D000563 ORTHO05D000536 7.1e-06 54.3 47 68.1
Thecc.09G264300 Theobroma cacao HOM05D000563 ORTHO05D000536 9.3e-06 53.9 47 61.7


User provided reference genes

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