Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv06294 Davidia involucrata HOM05D000932 ORTHO05D000729 3.1e-108 395.2 207 100.0
Cfa011417 Carpinus fangiana HOM05D000932 ORTHO05D000729 1.8e-44 183.3 200 64.5
Haze_23997 Corylus avellana HOM05D000932 ORTHO05D000729 7.8e-43 177.9 200 63.5
Actinidia00809 Actinidia chinensis HOM05D000932 ORTHO05D000729 6.6e-42 174.9 200 62.0
Nitab4.5_0009199g0020 Nicotiana tabacum HOM05D000932 ORTHO05D000729 6.1e-40 168.3 197 58.9
Rhsim01G0223700 Rhododendron simsii HOM05D000932 ORTHO05D000729 1.8e-39 166.8 204 60.8
Actinidia03768 Actinidia chinensis HOM05D000932 ORTHO05D000729 4.0e-39 165.6 194 60.3
QL01p034599 Quercus lobata HOM05D000932 ORTHO05D000729 1.5e-38 163.7 200 57.5
vmacro14497 Vaccinium macrocarpon HOM05D000932 ORTHO05D000729 3.4e-38 162.5 198 60.1
Lj2A1045T49 Lonicera japonica HOM05D000932 ORTHO05D000729 8.3e-37 157.9 194 55.7
Nitab4.5_0009445g0020 Nicotiana tabacum HOM05D000932 ORTHO05D000729 5.0e-34 148.7 197 55.3
Hma1.2p1_0035F.1_g021790 Hydrangea macrophylla HOM05D000932 ORTHO05D000729 1.1e-33 147.5 130 73.1
Peaxi162Scf00836g00322 Petunia axillaris HOM05D000932 ORTHO05D000729 3.3e-33 146.0 197 52.8
Manes.11G137200 Manihot esculenta HOM05D000932 ORTHO05D000729 9.5e-33 144.4 192 54.2
Oeu062310.1 Olea europaea HOM05D000932 ORTHO05D000729 2.8e-32 142.9 191 55.5
CAN.G971.7 Capsicum annuum HOM05D000932 ORTHO05D000729 2.3e-31 139.8 195 56.4
Solyc11g072850.2 Solanum lycopersicum HOM05D000932 ORTHO05D000729 2.3e-31 139.8 207 53.6
GSVIVG01025065001 Vitis vinifera HOM05D000932 ORTHO05D000729 5.2e-31 138.7 195 54.9
Aqoxy4G03107 Aquilegia oxysepala HOM05D000932 ORTHO05D000729 6.8e-31 138.3 176 55.7
TAR623G0516 Trochodendron aralioides HOM05D000932 ORTHO05D000729 2.0e-30 136.7 178 57.3
Oeu040996.1 Olea europaea HOM05D000932 ORTHO05D000729 1.7e-29 133.7 191 53.9
Oeu040265.1 Olea europaea HOM05D000932 ORTHO05D000729 2.9e-29 132.9 191 50.8
CiPaw.13G102500 Carya illinoinensis HOM05D000932 ORTHO05D000729 1.9e-28 130.2 173 58.4
Thecc.09G331400 Theobroma cacao HOM05D000932 ORTHO05D000729 4.1e-28 129.0 192 49.0
Potri.001G233600 Populus trichocarpa HOM05D000932 ORTHO05D000729 5.4e-28 128.6 190 51.6
COL.COLO4_18415 Corchorus olitorius HOM05D000932 ORTHO05D000729 3.5e-27 125.9 116 62.9
Lsat_1_v5_gn_9_21300 Lactuca sativa HOM05D000932 ORTHO05D000729 6.0e-27 125.2 199 51.8
TWI31G1196 Tripterygium wilfordii HOM05D000932 ORTHO05D000729 1.3e-26 124.0 173 52.0
CANSAT54G2797 Cannabis sativa HOM05D000932 ORTHO05D000729 3.0e-26 122.9 132 65.2
Cc01_g12030 Coffea canephora HOM05D000932 ORTHO05D000729 3.9e-26 122.5 105 69.5
Gohir.D07G098900 Gossypium hirsutum HOM05D000932 ORTHO05D000729 1.9e-25 120.2 201 47.8
Duzib170G0631 Durio zibethinus HOM05D000932 ORTHO05D000729 5.6e-25 118.6 120 61.7
AUR62009650 Chenopodium quinoa HOM05D000932 ORTHO05D000729 2.1e-24 116.7 138 56.5
Gohir.D03G131400 Gossypium hirsutum HOM05D000932 ORTHO05D000729 2.1e-24 116.7 190 45.8
Eucgr.J02104 Eucalyptus grandis HOM05D000932 ORTHO05D000729 2.8e-24 116.3 175 52.6
TWI75G0146 Tripterygium wilfordii HOM05D000932 ORTHO05D000729 3.6e-24 115.9 188 47.3
Gorai.001G106600 Gossypium raimondii HOM05D000932 ORTHO05D000729 6.2e-24 115.2 196 48.5
Gohir.A07G094600 Gossypium hirsutum HOM05D000932 ORTHO05D000729 8.1e-24 114.8 201 47.3
Dinv32825 Davidia involucrata HOM05D000932 ORTHO05D000729 1.1e-23 114.4 142 59.2
Glyma.11G146690 Glycine max HOM05D000932 ORTHO05D000729 1.1e-23 114.4 136 62.5
VMungo1127G0752 Vigna mungo HOM05D000932 ORTHO05D000729 1.1e-23 114.4 194 49.0
Gohir.D05G099200 Gossypium hirsutum HOM05D000932 ORTHO05D000729 1.4e-23 114.0 192 46.4
Gohir.A03G036900 Gossypium hirsutum HOM05D000932 ORTHO05D000729 4.0e-23 112.5 190 45.8
Ciclev10029153m.g Citrus clementina HOM05D000932 ORTHO05D000729 5.2e-23 112.1 196 48.0
RcHm_v2.0_Chr5g0062181 Rosa chinensis HOM05D000932 ORTHO05D000729 5.2e-23 112.1 213 44.6
Lj3g0021931 Lotus japonicus HOM05D000932 ORTHO05D000729 6.8e-23 111.7 150 55.3
Gorai.003G138200 Gossypium raimondii HOM05D000932 ORTHO05D000729 8.9e-23 111.3 190 45.3
Ah.15g096310 Amaranthus hybridus HOM05D000932 ORTHO05D000729 1.5e-22 110.5 167 46.7
MD11G1118000 Malus domestica HOM05D000932 ORTHO05D000729 1.5e-22 110.5 211 44.5
PSO832G0188 Papaver somniferum HOM05D000932 ORTHO05D000729 1.5e-22 110.5 180 49.4
Phvul.011G069800 Phaseolus vulgaris HOM05D000932 ORTHO05D000729 1.5e-22 110.5 195 47.2
Duzib168G1389 Durio zibethinus HOM05D000932 ORTHO05D000729 2.6e-22 109.8 194 46.9
Glyma.13G331000 Glycine max HOM05D000932 ORTHO05D000729 2.6e-22 109.8 128 59.4
PSO063G6721 Papaver somniferum HOM05D000932 ORTHO05D000729 2.6e-22 109.8 180 49.4
Glyma.12G074400 Glycine max HOM05D000932 ORTHO05D000729 3.4e-22 109.4 210 46.7
Lalb_Chr03g0026971 Lupinus albus HOM05D000932 ORTHO05D000729 3.4e-22 109.4 202 46.5
Atru.chr3.3781 Acer truncatum HOM05D000932 ORTHO05D000729 5.8e-22 108.6 139 55.4
Psat7g221360 Pisum sativum HOM05D000932 ORTHO05D000729 5.8e-22 108.6 137 56.2
ECA247G3745 Erigeron canadensis HOM05D000932 ORTHO05D000476 7.5e-22 108.2 200 46.5
Nitab4.5_0008854g0010 Nicotiana tabacum HOM05D000932 ORTHO05D000729 9.9e-22 107.8 200 43.5
Glyma.15G219800 Glycine max HOM05D000932 ORTHO05D000729 1.3e-21 107.5 129 58.9
ClCG03G001780 Citrullus lanatus HOM05D000932 ORTHO05D000729 1.7e-21 107.1 135 59.3
VMungo1080G1675 Vigna mungo HOM05D000932 ORTHO05D000729 2.2e-21 106.7 131 58.0
Ca_01362_v3 Cicer arietinum L. HOM05D000932 ORTHO05D000729 8.3e-21 104.8 145 53.8
Hund05021 Selenicereus undatus HOM05D000932 ORTHO05D000729 8.3e-21 104.8 189 45.5
Gohir.A05G099300 Gossypium hirsutum HOM05D000932 ORTHO05D000729 1.4e-20 104.0 193 44.6
Gorai.009G103100 Gossypium raimondii HOM05D000932 ORTHO05D000729 1.9e-20 103.6 193 44.6
MBI14_g20929_MAGBIO Magnolia biondii HOM05D000932 ORTHO05D000729 2.4e-20 103.2 164 48.8
MBI14_g27051_MAGBIO Magnolia biondii HOM05D000932 ORTHO05D000729 2.4e-20 103.2 164 48.8
Sopen11g030520 Solanum pennellii HOM05D000932 ORTHO05D000729 3.2e-20 102.8 86 70.9
arahy.Tifrunner.gnm1.ann1.AE0X9Y Arachis hypogaea HOM05D000932 ORTHO05D000729 7.1e-20 101.7 160 48.8
EL10Ac7g15936 Beta vulgaris HOM05D000932 ORTHO05D000729 9.2e-20 101.3 139 53.2
MELO3C020684.2 Cucumis melo HOM05D000932 ORTHO05D000729 9.2e-20 101.3 179 45.8
CsaV3_1G033810 Cucumis sativus L. HOM05D000932 ORTHO05D000729 9.2e-20 101.3 179 46.4
Medtr4g061823 Medicago truncatula HOM05D000932 ORTHO05D000729 1.2e-19 100.9 150 50.7
Medtr4g061910 Medicago truncatula HOM05D000932 ORTHO05D000729 1.2e-19 100.9 150 50.7
Phvul.L002465 Phaseolus vulgaris HOM05D000932 ORTHO05D000729 1.6e-19 100.5 128 57.8
PGSC0003DMG400015524 Solanum tuberosum HOM05D000932 ORTHO05D000729 1.6e-19 100.5 86 69.8
MSTRG.21165 Avicennia marina HOM05D000932 ORTHO05D000729 3.5e-19 99.4 195 43.6
Lj3g0019030 Lotus japonicus HOM05D000932 ORTHO05D000729 6.0e-19 98.6 170 48.2
SHI05990 Sapria himalayana HOM05D000932 ORTHO05D000729 7.8e-19 98.2 193 44.6
TPR.G11573 Trifolium pratense HOM05D000932 ORTHO05D000729 7.8e-19 98.2 163 50.3
MD03G1105500 Malus domestica HOM05D000932 ORTHO05D000729 2.3e-18 96.7 211 43.6
arahy.Tifrunner.gnm1.ann1.KU7VJQ Arachis hypogaea HOM05D000932 ORTHO05D000729 6.6e-18 95.1 161 47.2
PGR119G1900 Punica granatum HOM05D000932 ORTHO05D000729 8.6e-18 94.7 194 44.8
Medtr2g096080 Medicago truncatula HOM05D000932 ORTHO05D000729 1.1e-17 94.4 165 46.7
FAN11G1095 Fragaria x ananassa HOM05D000932 ORTHO05D000729 1.9e-17 93.6 126 54.0
FAN25G0417 Fragaria x ananassa HOM05D000932 ORTHO05D000729 1.9e-17 93.6 126 54.0
FAN16G0142 Fragaria x ananassa HOM05D000932 ORTHO05D000729 2.5e-17 93.2 126 53.2
FAN21G3891 Fragaria x ananassa HOM05D000932 ORTHO05D000729 3.3e-17 92.8 139 51.1
Psat5g282000 Pisum sativum HOM05D000932 ORTHO05D000729 4.3e-17 92.4 147 51.0
Ah.08g215020 Amaranthus hybridus HOM05D000932 ORTHO05D000729 1.2e-16 90.9 201 41.3
Nn2g10563 Nelumbo nucifera HOM05D000932 ORTHO05D000729 1.6e-16 90.5 196 41.3
HanXRQChr08g0230561 Helianthus annuus HOM05D000932 ORTHO05D000729 4.7e-16 89.0 168 45.8
A02p06670 Brassica napus HOM05D000932 ORTHO05D000729 5.2e-15 85.5 123 49.6
CARHR273630 Cardamine hirsuta HOM05D000932 ORTHO05D000729 5.2e-15 85.5 114 50.0
arahy.Tifrunner.gnm1.ann1.3QBB6E Arachis hypogaea HOM05D000932 ORTHO05D000729 6.8e-15 85.1 141 49.6
arahy.Tifrunner.gnm1.ann1.IR754M Arachis hypogaea HOM05D000932 ORTHO05D000729 6.8e-15 85.1 141 49.6
BolC2t07295H Brassica oleracea HOM05D000932 ORTHO05D000729 6.8e-15 85.1 123 49.6
C02p11960 Brassica napus HOM05D000932 ORTHO05D000729 8.9e-15 84.7 123 49.6
BraA02t05749Z Brassica rapa HOM05D000932 ORTHO05D000729 8.9e-15 84.7 123 49.6
DCAR_005294 Daucus carota HOM05D000932 ORTHO05D000729 1.5e-14 84.0 201 42.3
Sp6g21660 Schrenkiella parvula HOM05D000932 ORTHO05D000729 1.5e-14 84.0 131 46.6
Sc12g0001850 Simmondsia chinensis HOM05D000932 ORTHO05D000729 9.9e-14 81.3 145 46.2
AT5G59990 Arabidopsis thaliana HOM05D000932 ORTHO05D000729 4.9e-13 79.0 133 47.4
Carub.0008s2069 Capsella rubella HOM05D000932 ORTHO05D000729 6.4e-13 78.6 159 44.0
Lalb_Chr24g0394321 Lupinus albus HOM05D000932 ORTHO05D000729 6.4e-13 78.6 88 56.8
BcaB05g22601 Brassica carinata HOM05D000932 ORTHO05D000729 8.4e-13 78.2 197 37.1
Thhalv10014534m.g Eutrema salsugineum HOM05D000932 ORTHO05D000729 8.4e-13 78.2 172 40.7
BcaC04g19654 Brassica carinata HOM05D000932 ORTHO05D000729 1.4e-12 77.4 192 39.6
C09p52490 Brassica napus HOM05D000932 ORTHO05D000729 1.4e-12 77.4 192 39.6
BolC9t58116H Brassica oleracea HOM05D000932 ORTHO05D000729 1.4e-12 77.4 192 39.6
A10p17200 Brassica napus HOM05D000932 ORTHO05D000729 1.9e-12 77.0 133 46.6
Migut.D02156 Erythranthe guttata HOM05D000932 ORTHO05D000729 1.9e-12 77.0 213 39.0
AL8G36560 Arabidopsis lyrata HOM05D000932 ORTHO05D000729 3.2e-12 76.3 154 42.2
Sed0019895 Sechium edule HOM05D000932 ORTHO05D000729 4.2e-12 75.9 128 51.6
arahy.Tifrunner.gnm1.ann1.ICH4NU Arachis hypogaea HOM05D000932 ORTHO05D000729 5.4e-12 75.5 73 61.6
MELO3C025709.2 Cucumis melo HOM05D000932 ORTHO05D000729 1.2e-11 74.3 144 41.0
CsaV3_6G022010 Cucumis sativus L. HOM05D000932 ORTHO05D000729 1.2e-11 74.3 109 45.9
Nitab4.5_0000022g0340 Nicotiana tabacum HOM05D000932 ORTHO05D000729 1.2e-11 74.3 199 36.2
BcaB08g36204 Brassica carinata HOM05D000932 ORTHO05D000729 4.6e-11 72.4 133 46.6
DCAR_006019 Daucus carota HOM05D000932 ORTHO05D000729 4.6e-11 72.4 55 72.7
PSO339G4745 Papaver somniferum HOM05D000932 ORTHO05D000729 6.0e-11 72.0 151 39.7
PSO384G2834 Papaver somniferum HOM05D000932 ORTHO05D000729 6.0e-11 72.0 149 38.9
BraA10t43801Z Brassica rapa HOM05D000932 ORTHO05D000729 1.3e-10 70.9 128 44.5
SalBow3G2952 Salvia bowleyana HOM05D000932 ORTHO05D000729 1.3e-10 70.9 141 41.1
ECA248G0669 Erigeron canadensis HOM05D000002 ORTHO05D000001 8.7e-10 68.2 48 81.2
Hma1.2p1_1123F.1_g259400 Hydrangea macrophylla HOM05D000932 ORTHO05D000729 8.7e-10 68.2 95 51.6
SalBow3G0934 Salvia bowleyana HOM05D000932 ORTHO05D000729 8.7e-10 68.2 191 37.7
Dinv38920 Davidia involucrata HOM05D000932 ORTHO05D000729 1.1e-09 67.8 130 43.1
Sabra01G0076200 Salix brachista HOM05D000932 ORTHO05D000729 1.1e-09 67.8 123 44.7
THA.LOC104799467 Tarenaya hassleriana HOM05D000932 ORTHO05D000729 1.1e-09 67.8 132 43.9
TAR636G0780 Trochodendron aralioides HOM05D000932 ORTHO05D000729 1.1e-09 67.8 118 49.2
Prupe.6G088100 Prunus persica HOM05D000932 ORTHO05D000729 1.5e-09 67.4 193 37.3
Rhsim07G0088500 Rhododendron simsii HOM05D000932 ORTHO05D000729 3.3e-09 66.2 123 43.9
TPR.G2974 Trifolium pratense HOM05D000932 ORTHO05D000729 4.3e-09 65.9 54 68.5
TAR629G1819 Trochodendron aralioides HOM05D000932 ORTHO05D000729 4.3e-09 65.9 138 46.4
THA.LOC104810820 Tarenaya hassleriana HOM05D000932 ORTHO05D000729 7.3e-09 65.1 178 37.1
HanXRQChr03g0085921 Helianthus annuus HOM05D000932 ORTHO05D000729 1.6e-08 63.9 112 44.6
Sed0007122 Sechium edule HOM05D000932 ORTHO05D000729 1.6e-08 63.9 162 37.7
SalBow3G1225 Salvia bowleyana HOM05D000932 ORTHO05D000729 2.1e-08 63.5 133 41.4
Migut.A00747 Erythranthe guttata HOM05D000932 ORTHO05D000729 2.8e-08 63.2 144 41.0
Lsat_1_v5_gn_6_85380 Lactuca sativa HOM05D000932 ORTHO05D000729 2.8e-08 63.2 117 40.2
Nitab4.5_0004114g0060 Nicotiana tabacum HOM05D000932 ORTHO05D000729 3.6e-08 62.8 171 37.4
Nn1g01593 Nelumbo nucifera HOM05D000932 ORTHO05D000729 4.7e-08 62.4 127 47.2
CSS0010735 Camellia sinensis var. sinensis HOM05D000932 ORTHO05D000729 8.1e-08 61.6 82 52.4
Cc08_g15020 Coffea canephora HOM05D000932 ORTHO05D000729 1.1e-07 61.2 120 42.5
HanXRQChr13g0394131 Helianthus annuus HOM05D000932 ORTHO05D000729 1.4e-07 60.8 119 42.9
Nitab4.5_0001522g0030 Nicotiana tabacum HOM05D000932 ORTHO05D000729 1.4e-07 60.8 167 40.7
Cfa012201 Carpinus fangiana HOM05D000932 ORTHO05D000729 1.8e-07 60.5 115 48.7
Lsat_1_v5_gn_6_4580 Lactuca sativa HOM05D000932 ORTHO05D000729 1.8e-07 60.5 121 43.8
Oeu059560.1 Olea europaea HOM05D000932 ORTHO05D000729 1.8e-07 60.5 118 43.2
Potri.001G101200 Populus trichocarpa HOM05D000932 ORTHO05D000729 1.8e-07 60.5 124 43.5
Potri.003G130500 Populus trichocarpa HOM05D000932 ORTHO05D000729 1.8e-07 60.5 132 43.2
Aa31LG1G12120 Aethionema arabicum HOM05D000932 ORTHO05D000729 2.4e-07 60.1 93 45.2
Hma1.2p1_0377F.1_g139450 Hydrangea macrophylla HOM05D000932 ORTHO05D000729 2.4e-07 60.1 93 46.2
CSS0007952 Camellia sinensis var. sinensis HOM05D000932 ORTHO05D000729 3.1e-07 59.7 126 40.5
Hund11451 Selenicereus undatus HOM05D000932 ORTHO05D000729 3.1e-07 59.7 169 34.3
CiPaw.12G090900 Carya illinoinensis HOM05D000932 ORTHO05D000729 4.0e-07 59.3 133 41.4
CAN.G532.9 Capsicum annuum HOM05D000932 ORTHO05D000729 5.3e-07 58.9 160 38.1
Actinidia33741 Actinidia chinensis HOM05D000932 ORTHO05D000729 6.9e-07 58.5 144 37.5
Lj4g0000406 Lotus japonicus HOM05D000932 ORTHO05D000729 6.9e-07 58.5 111 44.1
Nn6g33335 Nelumbo nucifera HOM05D000932 ORTHO05D000729 6.9e-07 58.5 146 42.5
PSO782G3796 Papaver somniferum HOM05D000932 ORTHO05D000729 9.0e-07 58.2 159 32.7
PGSC0003DMG400012193 Solanum tuberosum HOM05D000932 ORTHO05D000729 9.0e-07 58.2 85 49.4
Cpa.g.sc180.14 Carica papaya HOM05D000932 ORTHO05D000729 1.2e-06 57.8 137 39.4
DCAR_008365 Daucus carota HOM05D000932 ORTHO05D000729 1.2e-06 57.8 171 38.0
ECA240G4070 Erigeron canadensis HOM05D000932 ORTHO05D000729 1.2e-06 57.8 76 51.3
Oeu061387.1 Olea europaea HOM05D000932 ORTHO05D000729 2.0e-06 57.0 93 43.0
MBI04_g00369_MAGBIO Magnolia biondii HOM05D000932 ORTHO05D000729 2.6e-06 56.6 98 41.8
SEGI_39721 Sequoiadendron giganteum HOM05D000932 ORTHO05D000729 2.6e-06 56.6 160 38.1
Gohir.D09G186300 Gossypium hirsutum HOM05D000932 ORTHO05D000729 3.4e-06 56.2 99 42.4
Gorai.006G209000 Gossypium raimondii HOM05D000932 ORTHO05D000729 3.4e-06 56.2 99 42.4
QL12p032366 Quercus lobata HOM05D000932 ORTHO05D000729 3.4e-06 56.2 96 46.9
MELO3C005695.2 Cucumis melo HOM05D000932 ORTHO05D000729 7.6e-06 55.1 119 40.3
Thhalv10016744m.g Eutrema salsugineum HOM05D000932 ORTHO05D000729 7.6e-06 55.1 195 30.3
Gohir.A09G192000 Gossypium hirsutum HOM05D000932 ORTHO05D000729 7.6e-06 55.1 99 41.4
Ciclev10021189m.g Citrus clementina HOM05D000932 ORTHO05D000729 9.9e-06 54.7 149 38.3
Nn2g12819 Nelumbo nucifera HOM05D000932 ORTHO05D000729 9.9e-06 54.7 141 36.9
Psat7g031600 Pisum sativum HOM05D000932 ORTHO05D000729 9.9e-06 54.7 122 41.8


User provided reference genes

Program Settings