Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv06233 Davidia involucrata HOM05D005055 ORTHO05D006327 4.9e-57 224.2 107 100.0
Dinv14969 Davidia involucrata HOM05D005055 ORTHO05D006327 6.2e-12 74.3 48 75.0
vmacro11912 Vaccinium macrocarpon HOM05D005055 ORTHO05D006327 1.8e-11 72.8 64 57.8
QL08p026888 Quercus lobata HOM05D005055 ORTHO05D006327 6.9e-11 70.9 48 70.8
PGR083G1414 Punica granatum HOM05D005055 ORTHO05D006327 9.0e-11 70.5 48 68.8
RcHm_v2.0_Chr0c28g0500971 Rosa chinensis HOM05D005055 ORTHO05D006327 1.5e-10 69.7 48 64.6
RcHm_v2.0_Chr0c28g0501011 Rosa chinensis HOM05D005055 ORTHO05D006327 1.5e-10 69.7 48 64.6
RcHm_v2.0_Chr0c28g0501061 Rosa chinensis HOM05D005055 ORTHO05D006327 1.5e-10 69.7 48 64.6
RcHm_v2.0_Chr3g0490501 Rosa chinensis HOM05D005055 ORTHO05D006327 1.5e-10 69.7 48 64.6
RcHm_v2.0_Chr7g0243571 Rosa chinensis HOM05D005055 ORTHO05D006327 1.5e-10 69.7 48 64.6
RcHm_v2.0_Chr7g0243611 Rosa chinensis HOM05D005055 ORTHO05D006327 1.5e-10 69.7 48 64.6
Eucgr.F01210 Eucalyptus grandis HOM05D005055 ORTHO05D006327 2.0e-10 69.3 48 68.8
RcHm_v2.0_Chr5g0031481 Rosa chinensis HOM05D005055 ORTHO05D006327 2.6e-10 68.9 45 68.9
RcHm_v2.0_Chr7g0217341 Rosa chinensis HOM05D005055 ORTHO05D006327 2.6e-10 68.9 45 68.9
Rhsim06G0205400 Rhododendron simsii HOM05D005055 ORTHO05D006327 5.8e-10 67.8 46 69.6
Atru.chr2.2244 Acer truncatum HOM05D005055 ORTHO05D006327 7.6e-10 67.4 48 66.7
arahy.Tifrunner.gnm1.ann1.1K9JH7 Arachis hypogaea HOM05D005055 ORTHO05D006327 7.6e-10 67.4 48 66.7
arahy.Tifrunner.gnm1.ann1.254HEG Arachis hypogaea HOM05D005055 ORTHO05D006327 7.6e-10 67.4 48 66.7
FvH4_3g18660 Fragaria vesca HOM05D005055 ORTHO05D006327 7.6e-10 67.4 48 64.6
FAN25G1310 Fragaria x ananassa HOM05D005055 ORTHO05D006327 7.6e-10 67.4 48 64.6
Lalb_Chr25g0285991 Lupinus albus HOM05D005055 ORTHO05D006327 1.0e-09 67.0 48 64.6
MD11G1259500 Malus domestica HOM05D005055 ORTHO05D006327 1.0e-09 67.0 48 66.7
Manes.15G092000 Manihot esculenta HOM05D005055 ORTHO05D006327 1.0e-09 67.0 47 68.1
Nitab4.5_0005440g0050 Nicotiana tabacum HOM05D005055 ORTHO05D006327 1.0e-09 67.0 49 65.3
TAR629G2461 Trochodendron aralioides HOM05D005055 ORTHO05D006327 1.0e-09 67.0 45 71.1
RcHm_v2.0_Chr1g0325431 Rosa chinensis HOM05D005055 ORTHO05D006327 1.3e-09 66.6 48 60.4
GSVIVG01014230001 Vitis vinifera HOM05D005055 ORTHO05D006327 1.3e-09 66.6 48 66.7
Cpa.g.sc131.64 Carica papaya HOM05D005055 ORTHO05D006327 1.7e-09 66.2 80 45.0
Haze_09351 Corylus avellana HOM05D005055 ORTHO05D006327 1.7e-09 66.2 48 64.6
Nn1g04357 Nelumbo nucifera HOM05D005055 ORTHO05D006327 1.7e-09 66.2 48 64.6
MELO3C016098.2 Cucumis melo HOM05D005055 ORTHO05D006327 2.2e-09 65.9 77 48.1
Glyma.13G271500 Glycine max HOM05D005055 ORTHO05D006327 2.2e-09 65.9 47 66.0
Lj3g0015470 Lotus japonicus HOM05D005055 ORTHO05D006327 2.2e-09 65.9 48 62.5
Thecc.07G105000 Theobroma cacao HOM05D005055 ORTHO05D006327 2.2e-09 65.9 48 62.5
Cfa019592 Carpinus fangiana HOM05D005055 ORTHO05D006327 2.9e-09 65.5 47 66.0
MD03G1240200 Malus domestica HOM05D005055 ORTHO05D006327 3.8e-09 65.1 47 63.8
ClCG07G009980 Citrullus lanatus HOM05D005055 ORTHO05D006327 4.9e-09 64.7 77 46.8
Oeu025338.1 Olea europaea HOM05D005055 ORTHO05D006327 4.9e-09 64.7 48 64.6
Actinidia12556 Actinidia chinensis HOM05D005055 ORTHO05D006327 6.5e-09 64.3 45 64.4
CiPaw.11G163000 Carya illinoinensis HOM05D005055 ORTHO05D006327 6.5e-09 64.3 45 68.9
Potri.001G376600 Populus trichocarpa HOM05D005055 ORTHO05D006327 6.5e-09 64.3 48 64.6
Prupe.4G170400 Prunus persica HOM05D005055 ORTHO05D006327 6.5e-09 64.3 47 63.8
Sabra16G0248000 Salix brachista HOM05D005055 ORTHO05D006327 6.5e-09 64.3 48 64.6
VMungo1080G1419 Vigna mungo HOM05D005055 ORTHO05D006327 6.5e-09 64.3 45 66.7
MSTRG.6806 Avicennia marina HOM05D005055 ORTHO05D006327 8.4e-09 63.9 48 62.5
Phvul.005G067800 Phaseolus vulgaris HOM05D005055 ORTHO05D006327 8.4e-09 63.9 45 66.7
CANSAT35G0899 Cannabis sativa HOM05D005055 ORTHO05D006327 1.1e-08 63.5 48 64.6
CAN.G292.8 Capsicum annuum HOM05D005055 ORTHO05D006327 1.1e-08 63.5 48 60.4
Gorai.009G372500 Gossypium raimondii HOM05D005055 ORTHO05D006327 1.1e-08 63.5 48 60.4
Psat5g239800 Pisum sativum HOM05D005055 ORTHO05D006327 1.4e-08 63.2 46 63.0
CsaV3_4G008350 Cucumis sativus L. HOM05D005055 ORTHO05D006327 1.9e-08 62.8 77 46.8
Medtr2g078120 Medicago truncatula HOM05D005055 ORTHO05D006327 1.9e-08 62.8 46 63.0
Sed0010915 Sechium edule HOM05D005055 ORTHO05D006327 1.9e-08 62.8 84 41.7
TPR.G9221 Trifolium pratense HOM05D005055 ORTHO05D006327 1.9e-08 62.8 46 63.0
FAN21G0251 Fragaria x ananassa HOM05D005055 ORTHO05D006327 2.5e-08 62.4 48 60.4
MBI06_g18006_MAGBIO Magnolia biondii HOM05D005055 ORTHO05D006327 2.5e-08 62.4 48 60.4
RcHm_v2.0_Chr5g0052511 Rosa chinensis HOM05D005055 ORTHO05D006327 2.5e-08 62.4 44 61.4
Cc05_g11380 Coffea canephora HOM05D005055 ORTHO05D006327 3.2e-08 62.0 48 58.3
Gohir.A04G038500 Gossypium hirsutum HOM05D005055 ORTHO05D006327 3.2e-08 62.0 48 58.3
Gohir.D05G344500 Gossypium hirsutum HOM05D005055 ORTHO05D006327 3.2e-08 62.0 48 58.3
Nitab4.5_0000035g0040 Nicotiana tabacum HOM05D005055 ORTHO05D006327 3.2e-08 62.0 48 64.6
SalBow8G2403 Salvia bowleyana HOM05D005055 ORTHO05D006327 3.2e-08 62.0 53 56.6
Duzib213G0103 Durio zibethinus HOM05D005055 ORTHO05D006327 4.2e-08 61.6 48 58.3
Ciclev10008222m.g Citrus clementina HOM05D005055 ORTHO05D006327 5.5e-08 61.2 45 64.4
Peaxi162Scf01503g00020 Petunia axillaris HOM05D005055 ORTHO05D006327 7.1e-08 60.8 48 62.5
Lj1A833T50 Lonicera japonica HOM05D005055 ORTHO05D006327 9.3e-08 60.5 45 64.4
Aqoxy4G00472 Aquilegia oxysepala HOM05D005055 ORTHO05D006327 1.6e-07 59.7 45 60.0
Aqoxy3G02852 Aquilegia oxysepala HOM05D005055 ORTHO05D006327 2.1e-07 59.3 45 60.0
Sopen12g005980 Solanum pennellii HOM05D005055 ORTHO05D006327 2.1e-07 59.3 45 62.2
THA.LOC104799653 Tarenaya hassleriana HOM05D005055 ORTHO05D006327 2.1e-07 59.3 45 64.4
Sc16g0007450 Simmondsia chinensis HOM05D005055 ORTHO05D006327 2.7e-07 58.9 48 56.2
ECA240G2410 Erigeron canadensis HOM05D005055 ORTHO05D006327 3.5e-07 58.5 48 58.3
COL.COLO4_17607 Corchorus olitorius HOM05D000878 ORTHO05D006327 4.6e-07 58.2 48 54.2
SGA_v2.0_scaffold73G24201 Striga asiatica HOM05D005055 ORTHO05D006327 4.6e-07 58.2 55 49.1
ATR0602G274 Amborella trichopoda HOM05D005055 ORTHO05D006327 6.0e-07 57.8 45 60.0
Solyc12g014190.2 Solanum lycopersicum HOM05D005055 ORTHO05D006327 7.9e-07 57.4 45 60.0
unitig_85.g27415 Utricularia gibba HOM05D005055 ORTHO05D006327 1.0e-06 57.0 45 57.8
unitig_86.g29833 Utricularia gibba HOM05D005055 ORTHO05D006327 1.0e-06 57.0 45 57.8
CDE10G0422 Ceratophyllum demersum HOM05D005055 ORTHO05D006327 1.3e-06 56.6 45 57.8
PGSC0003DMG400015380 Solanum tuberosum HOM05D005055 ORTHO05D006327 1.3e-06 56.6 45 57.8
AUR62036100 Chenopodium quinoa HOM05D005055 ORTHO05D006327 3.0e-06 55.5 48 52.1
Migut.M00745 Erythranthe guttata HOM05D005055 ORTHO05D006327 3.0e-06 55.5 45 57.8
PSO782G0219 Papaver somniferum HOM05D005055 ORTHO05D006327 3.0e-06 55.5 46 56.5
DCAR_013144 Daucus carota HOM05D005055 ORTHO05D006327 3.9e-06 55.1 45 55.6
HanXRQChr13g0389111 Helianthus annuus HOM05D005055 ORTHO05D006327 8.7e-06 53.9 45 57.8
PSO063G4771 Papaver somniferum HOM05D005055 ORTHO05D006327 8.7e-06 53.9 46 54.3


User provided reference genes

Program Settings