Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv06084 Davidia involucrata HOM05D005525 ORTHO05D006341 6.8e-73 277.3 149 100.0
Dinv29269 Davidia involucrata HOM05D005525 ORTHO05D006341 2.1e-21 106.3 78 80.8
Lj1A1021T46 Lonicera japonica HOM05D005525 ORTHO05D006341 6.9e-17 91.3 78 67.9
Lj1C1018G9 Lonicera japonica HOM05D005525 ORTHO05D006341 6.9e-17 91.3 78 67.9
Actinidia03175 Actinidia chinensis HOM05D005525 ORTHO05D006341 8.4e-15 84.3 71 67.6
Actinidia06143 Actinidia chinensis HOM05D005525 ORTHO05D006341 1.1e-14 84.0 78 62.8
vmacro10127 Vaccinium macrocarpon HOM05D005525 ORTHO05D006341 1.1e-14 84.0 78 64.1
Eucgr.A01450 Eucalyptus grandis HOM05D005525 ORTHO05D006341 1.4e-14 83.6 78 62.8
TAR636G1140 Trochodendron aralioides HOM05D005525 ORTHO05D006341 1.4e-14 83.6 78 64.1
MSTRG.8648 Avicennia marina HOM05D005525 ORTHO05D006341 1.9e-14 83.2 78 62.8
Rhsim09G0206200 Rhododendron simsii HOM05D005525 ORTHO05D006341 1.9e-14 83.2 78 65.4
CSS0016451 Camellia sinensis var. sinensis HOM05D005525 ORTHO05D006341 2.4e-14 82.8 94 57.4
MBI07_g24776_MAGBIO Magnolia biondii HOM05D005525 ORTHO05D006341 7.1e-14 81.3 78 64.1
Sopen03g022860 Solanum pennellii HOM05D005525 ORTHO05D006341 7.1e-14 81.3 78 64.1
CsaV3_3G019800 Cucumis sativus L. HOM05D005525 ORTHO05D006341 1.2e-13 80.5 78 62.8
PGSC0003DMG400018550 Solanum tuberosum HOM05D005525 ORTHO05D006341 1.2e-13 80.5 78 62.8
ClCG05G008980 Citrullus lanatus HOM05D005525 ORTHO05D006341 1.6e-13 80.1 78 62.8
MELO3C008500.2 Cucumis melo HOM05D005525 ORTHO05D006341 1.6e-13 80.1 78 62.8
Nitab4.5_0007888g0020 Nicotiana tabacum HOM05D005525 ORTHO05D006341 1.6e-13 80.1 91 58.2
Solyc03g083060.3 Solanum lycopersicum HOM05D005525 ORTHO05D006341 2.7e-13 79.3 78 62.8
Peaxi162Scf00740g10015 Petunia axillaris HOM05D005525 ORTHO05D006341 3.5e-13 79.0 78 60.3
HanXRQChr04g0100481 Helianthus annuus HOM05D005525 ORTHO05D006341 4.6e-13 78.6 78 59.0
Phvul.009G051800 Phaseolus vulgaris HOM05D005525 ORTHO05D006341 7.9e-13 77.8 78 60.3
Cpa.g.sc3.96 Carica papaya HOM05D005525 ORTHO05D006341 1.0e-12 77.4 49 81.6
Nitab4.5_0007005g0020 Nicotiana tabacum HOM05D005525 ORTHO05D006341 1.3e-12 77.0 97 49.5
Sed0006937 Sechium edule HOM05D005525 ORTHO05D006341 1.8e-12 76.6 78 59.0
CiPaw.05G197600 Carya illinoinensis HOM05D005525 ORTHO05D006341 2.3e-12 76.3 77 57.1
Gohir.A03G052000 Gossypium hirsutum HOM05D005525 ORTHO05D006341 2.3e-12 76.3 78 59.0
CAN.G481.19 Capsicum annuum HOM05D005525 ORTHO05D006341 3.0e-12 75.9 72 65.3
Aqoxy5G03920 Aquilegia oxysepala HOM05D005525 ORTHO05D006341 3.9e-12 75.5 78 55.1
DCAR_010595 Daucus carota HOM05D005525 ORTHO05D006341 5.1e-12 75.1 78 59.0
GSVIVG01038560001 Vitis vinifera HOM05D005525 ORTHO05D006341 8.7e-12 74.3 78 57.7
COL.COLO4_16772 Corchorus olitorius HOM05D005525 ORTHO05D006341 1.5e-11 73.6 61 65.6
MD07G1287000 Malus domestica HOM05D005525 ORTHO05D006341 1.9e-11 73.2 78 57.7
Duzib068G0374 Durio zibethinus HOM05D005525 ORTHO05D006341 2.5e-11 72.8 52 71.2
Potri.012G016600 Populus trichocarpa HOM05D005525 ORTHO05D006341 2.5e-11 72.8 49 75.5
THA.LOC104799969 Tarenaya hassleriana HOM05D005525 ORTHO05D006341 2.5e-11 72.8 78 56.4
Gohir.D03G115100 Gossypium hirsutum HOM05D005525 ORTHO05D006341 3.3e-11 72.4 49 73.5
Hma1.2p1_0404F.1_g145280 Hydrangea macrophylla HOM05D005525 ORTHO05D006341 3.3e-11 72.4 94 54.3
Hma1.2p1_1587F.1_g292280 Hydrangea macrophylla HOM05D005525 ORTHO05D006341 3.3e-11 72.4 65 67.7
Nn3g18957 Nelumbo nucifera HOM05D005525 ORTHO05D006341 3.3e-11 72.4 45 80.0
TAR375G0567 Trochodendron aralioides HOM05D005525 ORTHO05D006341 3.3e-11 72.4 78 53.8
HPP92_006332 Vanilla planifolia HOM05D005525 ORTHO05D006341 5.6e-11 71.6 97 51.5
MSTRG.27021 Avicennia marina HOM05D005525 ORTHO05D006341 7.4e-11 71.2 77 54.5
Hund11649 Selenicereus undatus HOM05D005525 ORTHO05D006341 7.4e-11 71.2 56 69.6
Gorai.003G121400 Gossypium raimondii HOM05D005525 ORTHO05D006341 9.6e-11 70.9 49 71.4
HPP92_027874 Vanilla planifolia HOM05D005525 ORTHO05D006341 9.6e-11 70.9 97 52.6
Atru.chr12.2235 Acer truncatum HOM05D005525 ORTHO05D006341 1.6e-10 70.1 52 67.3
PSO063G1159 Papaver somniferum HOM05D005525 ORTHO05D006341 2.1e-10 69.7 72 58.3
Sabra12G0015700 Salix brachista HOM05D005525 ORTHO05D006341 2.1e-10 69.7 52 67.3
Glyma.04G234800 Glycine max HOM05D005525 ORTHO05D006341 3.7e-10 68.9 46 78.3
arahy.Tifrunner.gnm1.ann1.K3B567 Arachis hypogaea HOM05D005525 ORTHO05D006341 4.8e-10 68.6 56 67.9
Lj3A903T39 Lonicera japonica HOM05D005525 ORTHO05D006341 4.8e-10 68.6 71 53.5
Thecc.03G200300 Theobroma cacao HOM05D005525 ORTHO05D006341 6.2e-10 68.2 49 69.4
Cfa016238 Carpinus fangiana HOM05D005525 ORTHO05D006341 8.1e-10 67.8 49 69.4
Duzib205G1243 Durio zibethinus HOM05D005525 ORTHO05D006341 8.1e-10 67.8 49 69.4
Glyma.06G129650 Glycine max HOM05D005525 ORTHO05D006341 8.1e-10 67.8 63 60.3
Lsat_1_v5_gn_2_136220 Lactuca sativa HOM05D005525 ORTHO05D006341 8.1e-10 67.8 61 62.3
arahy.Tifrunner.gnm1.ann1.9S9EKZ Arachis hypogaea HOM05D005525 ORTHO05D006341 1.1e-09 67.4 67 62.7
arahy.Tifrunner.gnm1.ann1.SHH15X Arachis hypogaea HOM05D005525 ORTHO05D006341 1.1e-09 67.4 67 62.7
EL10Ac3g05265 Beta vulgaris HOM05D005525 ORTHO05D006341 1.1e-09 67.4 45 75.6
Dinv03716 Davidia involucrata HOM05D000349 ORTHO05D029215 1.1e-09 67.4 48 70.8
Gohir.A12G249300 Gossypium hirsutum HOM05D005525 ORTHO05D006341 1.1e-09 67.4 57 66.7
QL09p008682 Quercus lobata HOM05D005525 ORTHO05D006341 1.1e-09 67.4 80 51.2
arahy.Tifrunner.gnm1.ann1.X3UYKF Arachis hypogaea HOM05D005525 ORTHO05D006341 1.8e-09 66.6 56 66.1
Gohir.D12G250100 Gossypium hirsutum HOM05D005525 ORTHO05D006341 1.8e-09 66.6 46 73.9
Gorai.008G268200 Gossypium raimondii HOM05D005525 ORTHO05D006341 1.8e-09 66.6 46 73.9
PSO170G3224 Papaver somniferum HOM05D005525 ORTHO05D006341 1.8e-09 66.6 72 56.9
Prupe.2G309100 Prunus persica HOM05D005525 ORTHO05D006341 1.8e-09 66.6 78 55.1
Haze_00203 Corylus avellana HOM05D005525 ORTHO05D006341 3.1e-09 65.9 49 67.3
Potri.015G012000 Populus trichocarpa HOM05D005525 ORTHO05D006341 3.1e-09 65.9 49 69.4
Hma1.2p1_1507F.1_g287640 Hydrangea macrophylla HOM05D005525 ORTHO05D006341 4.0e-09 65.5 53 67.9
arahy.Tifrunner.gnm1.ann1.Y3S9ZW Arachis hypogaea HOM05D005525 ORTHO05D006341 6.9e-09 64.7 56 64.3
FAN03G1856 Fragaria x ananassa HOM05D005525 ORTHO05D006341 6.9e-09 64.7 45 71.1
Ciclev10018919m.g Citrus clementina HOM05D005525 ORTHO05D006341 9.0e-09 64.3 46 73.9
Lalb_Chr08g0240181 Lupinus albus HOM05D005525 ORTHO05D006341 9.0e-09 64.3 45 71.1
Manes.01G184300 Manihot esculenta HOM05D005525 ORTHO05D006341 9.0e-09 64.3 41 75.6
TPR.G18747 Trifolium pratense HOM05D005525 ORTHO05D006341 9.0e-09 64.3 45 75.6
Oeu041060.1 Olea europaea HOM05D005525 ORTHO05D006341 1.2e-08 63.9 49 69.4
Medtr3g091650 Medicago truncatula HOM05D005525 ORTHO05D006341 1.5e-08 63.5 46 71.7
Hund21011 Selenicereus undatus HOM05D005525 ORTHO05D006341 1.5e-08 63.5 55 63.6
FAN06G1464 Fragaria x ananassa HOM05D005525 ORTHO05D006341 2.0e-08 63.2 58 62.1
FAN06G2949 Fragaria x ananassa HOM05D005525 ORTHO05D006341 2.0e-08 63.2 58 62.1
QL04p080554 Quercus lobata HOM05D005525 ORTHO05D006341 2.0e-08 63.2 68 58.8
BcaB08g35660 Brassica carinata HOM05D005525 ORTHO05D006341 2.6e-08 62.8 78 48.7
BcaC04g20517 Brassica carinata HOM05D005525 ORTHO05D006341 3.4e-08 62.4 78 47.4
A10p10490 Brassica napus HOM05D005525 ORTHO05D006341 3.4e-08 62.4 78 47.4
C09p42720 Brassica napus HOM05D005525 ORTHO05D006341 3.4e-08 62.4 78 47.4
BolC9t57148H Brassica oleracea HOM05D005525 ORTHO05D006341 3.4e-08 62.4 78 47.4
BraA10t43132Z Brassica rapa HOM05D005525 ORTHO05D006341 3.4e-08 62.4 78 47.4
CARHR266030 Cardamine hirsuta HOM05D005525 ORTHO05D006341 3.4e-08 62.4 78 50.0
CDE10G1205 Ceratophyllum demersum HOM05D005525 ORTHO05D006341 3.4e-08 62.4 65 52.3
AUR62006078 Chenopodium quinoa HOM05D005525 ORTHO05D006341 3.4e-08 62.4 45 71.1
Ca_16715_v3 Cicer arietinum L. HOM05D005525 ORTHO05D006341 3.4e-08 62.4 45 73.3
Thhalv10012800m.g Eutrema salsugineum HOM05D005525 ORTHO05D006341 3.4e-08 62.4 78 51.3
TAR425G0002 Trochodendron aralioides HOM05D005525 ORTHO05D006341 3.4e-08 62.4 49 71.4
ATR0602G130 Amborella trichopoda HOM05D005525 ORTHO05D006341 4.5e-08 62.0 44 70.5
FAN01G0744 Fragaria x ananassa HOM05D005525 ORTHO05D006341 4.5e-08 62.0 43 69.8
Sabra15G0009700 Salix brachista HOM05D005525 ORTHO05D006341 4.5e-08 62.0 49 65.3
AL8G27640 Arabidopsis lyrata HOM05D005525 ORTHO05D006341 5.8e-08 61.6 78 48.7
AUR62019416 Chenopodium quinoa HOM05D005525 ORTHO05D006341 7.6e-08 61.2 45 68.9
Psat5g076600 Pisum sativum HOM05D005525 ORTHO05D006341 7.6e-08 61.2 45 71.1
SGA_v2.0_scaffold192G40531 Striga asiatica HOM05D005525 ORTHO05D006341 9.9e-08 60.8 59 55.9
TWI39G0464 Tripterygium wilfordii HOM05D005525 ORTHO05D006341 9.9e-08 60.8 46 69.6
CSS0028512 Camellia sinensis var. sinensis HOM05D005525 ORTHO05D006341 1.7e-07 60.1 92 42.4
FvH4_7g31370 Fragaria vesca HOM05D005525 ORTHO05D006341 1.7e-07 60.1 43 67.4
AT5G53020 Arabidopsis thaliana HOM05D005525 ORTHO05D006341 2.2e-07 59.7 78 48.7
CANSAT21G1899 Cannabis sativa HOM05D005525 ORTHO05D006341 2.2e-07 59.7 46 65.2
Migut.F00203 Erythranthe guttata HOM05D005525 ORTHO05D006341 2.2e-07 59.7 46 65.2
Cc02_g01440 Coffea canephora HOM05D005525 ORTHO05D006341 2.9e-07 59.3 49 65.3
unitig_52.g17717 Utricularia gibba HOM05D005525 ORTHO05D006341 2.9e-07 59.3 75 50.7
VMungo1309G0981 Vigna mungo HOM05D005525 ORTHO05D005321 2.9e-07 59.3 39 76.9
Sc13g0009970 Simmondsia chinensis HOM05D005525 ORTHO05D006341 1.4e-06 57.0 46 65.2
unitig_92.g28252 Utricularia gibba HOM05D005525 ORTHO05D006341 1.4e-06 57.0 78 46.2
Manes.02G143500 Manihot esculenta HOM05D005525 ORTHO05D006341 1.9e-06 56.6 70 51.4
PGR042G3532 Punica granatum HOM05D005525 ORTHO05D006341 2.4e-06 56.2 36 75.0


User provided reference genes

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