Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv05859 Davidia involucrata HOM05D001026 ORTHO05D005232 0.0e+00 1242.6 629 100.0
Dinv07074 Davidia involucrata HOM05D001026 ORTHO05D005232 0.0e+00 1214.1 629 97.9
CSS0035277 Camellia sinensis var. sinensis HOM05D001026 ORTHO05D005232 5.0e-295 1017.3 631 82.9
TAR381G1087 Trochodendron aralioides HOM05D001026 ORTHO05D005232 9.8e-291 1003.0 624 80.4
QL02p002343 Quercus lobata HOM05D001026 ORTHO05D005232 4.6e-288 994.2 628 80.4
CiPaw.15G045700 Carya illinoinensis HOM05D001026 ORTHO05D005232 7.8e-288 993.4 629 79.8
Hma1.2p1_0593F.1_g185750 Hydrangea macrophylla HOM05D001026 ORTHO05D005232 5.2e-284 980.7 627 79.7
Haze_18258 Corylus avellana HOM05D001026 ORTHO05D005232 3.4e-283 978.0 625 79.5
vmacro21290 Vaccinium macrocarpon HOM05D001026 ORTHO05D005232 2.4e-281 971.8 625 80.0
Rhsim06G0077700 Rhododendron simsii HOM05D001026 ORTHO05D005232 1.2e-277 959.5 629 79.3
Atru.chr13.1116 Acer truncatum HOM05D001026 ORTHO05D005232 2.8e-277 958.4 624 77.7
Prupe.1G523400 Prunus persica HOM05D001026 ORTHO05D005232 1.1e-276 956.4 623 77.2
TWI56G0493 Tripterygium wilfordii HOM05D001026 ORTHO05D005232 2.7e-272 941.8 623 76.6
Potri.002G100800 Populus trichocarpa HOM05D001026 ORTHO05D005232 3.0e-271 938.3 629 75.7
MD08G1188800 Malus domestica HOM05D001026 ORTHO05D005232 1.5e-270 936.0 626 75.9
Ciclev10000130m.g Citrus clementina HOM05D001026 ORTHO05D005232 1.3e-269 932.9 639 74.0
Thecc.08G101700 Theobroma cacao HOM05D001026 ORTHO05D005232 4.9e-266 921.0 633 73.9
Sabra02G0079000 Salix brachista HOM05D001026 ORTHO05D005232 1.9e-265 919.1 629 74.7
Lj6g0009212 Lotus japonicus HOM05D001026 ORTHO05D005232 2.4e-265 918.7 630 73.8
Nn7g37838 Nelumbo nucifera HOM05D001026 ORTHO05D005232 4.2e-265 917.9 630 74.9
Lj4C96G17 Lonicera japonica HOM05D001026 ORTHO05D005232 5.4e-265 917.5 631 75.9
FAN18G1967 Fragaria x ananassa HOM05D001026 ORTHO05D005232 2.1e-264 915.6 624 73.9
FvH4_5g36450 Fragaria vesca HOM05D001026 ORTHO05D005232 1.0e-263 913.3 624 73.9
Glyma.13G027300 Glycine max HOM05D001026 ORTHO05D005232 1.7e-263 912.5 632 74.1
RcHm_v2.0_Chr7g0238491 Rosa chinensis HOM05D001026 ORTHO05D005232 3.9e-263 911.4 624 73.2
FAN08G3634 Fragaria x ananassa HOM05D001026 ORTHO05D005232 5.1e-263 911.0 624 73.9
Cc10_g06660 Coffea canephora HOM05D001026 ORTHO05D005232 4.3e-262 907.9 629 75.0
FAN04G2218 Fragaria x ananassa HOM05D001026 ORTHO05D005232 5.6e-262 907.5 624 73.4
FAN13G1430 Fragaria x ananassa HOM05D001026 ORTHO05D005232 9.6e-262 906.7 624 73.7
MD15G1376700 Malus domestica HOM05D001026 ORTHO05D005232 2.1e-261 905.6 624 73.2
Cfa017894 Carpinus fangiana HOM05D001026 ORTHO05D005232 3.6e-261 904.8 582 78.7
Medtr3g080120 Medicago truncatula HOM05D001026 ORTHO05D005232 8.1e-261 903.7 629 73.3
Ca_16276_v3 Cicer arietinum L. HOM05D001026 ORTHO05D005232 2.4e-260 902.1 631 71.9
Oeu029742.2 Olea europaea HOM05D001026 ORTHO05D005232 2.4e-260 902.1 629 74.1
Manes.02G148900 Manihot esculenta HOM05D001026 ORTHO05D005232 3.1e-260 901.7 629 73.8
COL.COLO4_12005 Corchorus olitorius HOM05D001026 ORTHO05D005232 4.0e-260 901.4 630 73.0
Gohir.A03G045800 Gossypium hirsutum HOM05D001026 ORTHO05D005232 3.4e-259 898.3 635 70.1
Duzib041G0801 Durio zibethinus HOM05D001026 ORTHO05D005232 9.9e-259 896.7 635 72.9
Psat5g110840 Pisum sativum HOM05D001026 ORTHO05D005232 1.1e-257 893.3 633 72.7
Gohir.D03G121400 Gossypium hirsutum HOM05D001026 ORTHO05D005232 3.2e-257 891.7 635 69.6
Eucgr.B00041 Eucalyptus grandis HOM05D001026 ORTHO05D005232 7.1e-257 890.6 629 73.3
Gorai.003G128400 Gossypium raimondii HOM05D001026 ORTHO05D005232 7.1e-257 890.6 635 69.4
Glyma.20G056500 Glycine max HOM05D001026 ORTHO05D005232 1.6e-256 889.4 623 72.9
THA.LOC104816596 Tarenaya hassleriana HOM05D001026 ORTHO05D005232 2.7e-256 888.6 635 72.0
Manes.18G063378 Manihot esculenta HOM05D001026 ORTHO05D005232 3.5e-256 888.3 624 74.0
Lalb_Chr18g0048141 Lupinus albus HOM05D001026 ORTHO05D005232 7.9e-256 887.1 631 71.3
TPR.G34506 Trifolium pratense HOM05D001026 ORTHO05D005232 2.1e-253 879.0 631 71.6
MSTRG.24986 Avicennia marina HOM05D001026 ORTHO05D005232 4.0e-252 874.8 633 72.0
CsaV3_3G047720 Cucumis sativus L. HOM05D001026 ORTHO05D005232 5.3e-252 874.4 630 71.3
MBI06_g22313_MAGBIO Magnolia biondii HOM05D001026 ORTHO05D005232 5.3e-252 874.4 626 71.7
Phvul.L003337 Phaseolus vulgaris HOM05D001026 ORTHO05D005232 1.1e-249 866.7 630 71.1
GSVIVG01009085001 Vitis vinifera HOM05D001026 ORTHO05D005232 7.1e-249 864.0 629 71.1
CANSAT64G2709 Cannabis sativa HOM05D001026 ORTHO05D005232 9.3e-249 863.6 630 70.8
Lalb_Chr17g0347341 Lupinus albus HOM05D001026 ORTHO05D005232 4.6e-248 861.3 631 68.9
MELO3C003550.2 Cucumis melo HOM05D001026 ORTHO05D005232 7.9e-248 860.5 643 69.5
Nitab4.5_0000786g0020 Nicotiana tabacum HOM05D001026 ORTHO05D005232 1.5e-246 856.3 602 72.8
Peaxi162Scf00571g00528 Petunia axillaris HOM05D001026 ORTHO05D005232 1.9e-246 855.9 625 70.2
Sopen04g029690 Solanum pennellii HOM05D001026 ORTHO05D005232 1.3e-245 853.2 629 70.4
Aqoxy6G00082 Aquilegia oxysepala HOM05D001026 ORTHO05D005232 2.1e-245 852.4 624 70.8
SGA_v2.0_scaffold74G24568 Striga asiatica HOM05D001026 ORTHO05D005232 2.1e-245 852.4 626 71.7
PSO700G0312 Papaver somniferum HOM05D001026 ORTHO05D005232 4.8e-245 851.3 646 69.0
PSO447G0261 Papaver somniferum HOM05D001026 ORTHO05D005232 6.3e-245 850.9 653 68.3
Nitab4.5_0005108g0010 Nicotiana tabacum HOM05D001026 ORTHO05D005232 1.8e-244 849.4 602 72.4
Solyc04g074720.3 Solanum lycopersicum HOM05D001026 ORTHO05D005232 3.1e-244 848.6 629 70.1
Peaxi162Scf00030g02517 Petunia axillaris HOM05D001026 ORTHO05D005232 9.0e-244 847.0 661 67.0
SalBow7G3028 Salvia bowleyana HOM05D001026 ORTHO05D005232 2.6e-243 845.5 630 70.8
Sed0011558 Sechium edule HOM05D001026 ORTHO05D005232 2.2e-242 842.4 631 69.3
Carub.0001s3287 Capsella rubella HOM05D001026 ORTHO05D005232 2.9e-242 842.0 630 69.5
Migut.C00225 Erythranthe guttata HOM05D001026 ORTHO05D005232 2.5e-241 839.0 630 69.8
Gorai.010G037700 Gossypium raimondii HOM05D001026 ORTHO05D005232 1.2e-240 836.6 633 68.2
Gohir.D06G034200 Gossypium hirsutum HOM05D001026 ORTHO05D005232 1.6e-240 836.3 633 68.1
Gohir.A06G033300 Gossypium hirsutum HOM05D001026 ORTHO05D005232 4.6e-240 834.7 633 67.8
Thhalv10006673m.g Eutrema salsugineum HOM05D001026 ORTHO05D005232 6.1e-240 834.3 626 68.8
AT1G35220 Arabidopsis thaliana HOM05D001026 ORTHO05D005232 1.3e-239 833.2 633 69.2
Sp1g25380 Schrenkiella parvula HOM05D001026 ORTHO05D005232 3.0e-239 832.0 626 68.7
VMungo0540G1065 Vigna mungo HOM05D001026 ORTHO05D005232 3.9e-239 831.6 706 63.5
CAN.G1173.1 Capsicum annuum HOM05D001026 ORTHO05D005232 6.7e-239 830.9 629 68.5
DCAR_009580 Daucus carota HOM05D001026 ORTHO05D005232 1.1e-238 830.1 628 68.5
CARHR286320 Cardamine hirsuta HOM05D001026 ORTHO05D005232 1.5e-238 829.7 630 68.3
Sc01g0000810 Simmondsia chinensis HOM05D001026 ORTHO05D005232 1.5e-238 829.7 649 65.3
AL1G49940 Arabidopsis lyrata HOM05D001026 ORTHO05D005232 3.7e-237 825.1 637 67.7
Sed0018981 Sechium edule HOM05D001026 ORTHO05D005232 3.7e-237 825.1 629 67.9
BolC7t42122H Brassica oleracea HOM05D001026 ORTHO05D005232 6.3e-237 824.3 626 68.4
A07p10680 Brassica napus HOM05D001026 ORTHO05D005232 8.2e-237 823.9 626 68.2
C07p16280 Brassica napus HOM05D001026 ORTHO05D005232 8.2e-237 823.9 626 68.4
BraA07t28862Z Brassica rapa HOM05D001026 ORTHO05D005232 8.2e-237 823.9 626 68.2
BcaB03g13886 Brassica carinata HOM05D001026 ORTHO05D005232 1.1e-236 823.5 627 68.4
BcaC06g35430 Brassica carinata HOM05D001026 ORTHO05D005232 3.1e-236 822.0 626 68.2
Hund26991 Selenicereus undatus HOM05D001026 ORTHO05D005232 4.1e-236 821.6 644 65.7
EL10Ac1g01144 Beta vulgaris HOM05D001026 ORTHO05D005232 1.2e-235 820.1 633 65.9
Aa31LG6G8880 Aethionema arabicum HOM05D001026 ORTHO05D005232 5.9e-235 817.8 632 67.4
ClCG11G014330 Citrullus lanatus HOM05D001026 ORTHO05D005232 4.2e-233 811.6 589 70.8
AUR62018974 Chenopodium quinoa HOM05D001026 ORTHO05D005232 9.4e-233 810.4 632 65.8
Ca_06108_v3 Cicer arietinum L. HOM05D001026 ORTHO05D005232 9.4e-233 810.4 634 64.5
AUR62027815 Chenopodium quinoa HOM05D001026 ORTHO05D005232 7.9e-232 807.4 635 65.8
PGSC0003DMG400017755 Solanum tuberosum HOM05D001026 ORTHO05D005232 2.0e-227 792.7 631 66.6
Ah.05g169670 Amaranthus hybridus HOM05D001026 ORTHO05D005232 3.4e-227 792.0 639 63.1
Hund16887 Selenicereus undatus HOM05D001026 ORTHO05D005232 5.9e-227 791.2 661 62.8
Solyc12g057130.3 Solanum lycopersicum HOM05D001026 ORTHO05D005232 5.9e-227 791.2 631 66.4
Sopen12g029790 Solanum pennellii HOM05D001026 ORTHO05D005232 5.9e-227 791.2 631 66.1
LjContig00564g0017936 Lotus japonicus HOM05D001026 ORTHO05D005232 1.7e-226 789.6 633 64.0
Psat2g022120 Pisum sativum HOM05D001026 ORTHO05D005232 1.7e-226 789.6 636 63.2
HPP92_016948 Vanilla planifolia HOM05D001026 ORTHO05D005232 7.2e-225 784.3 624 62.8
Medtr5g085880 Medicago truncatula HOM05D001026 ORTHO05D005232 1.8e-223 779.6 634 63.1
unitig_46.g17923 Utricularia gibba HOM05D001026 ORTHO05D005232 2.6e-222 775.8 630 66.2
ATR0684G075 Amborella trichopoda HOM05D001026 ORTHO05D005232 2.4e-220 769.2 643 63.9
ECA247G3686 Erigeron canadensis HOM05D001026 ORTHO05D005232 9.1e-220 767.3 632 64.9
Lsat_1_v5_gn_1_3061 Lactuca sativa HOM05D001026 ORTHO05D005232 1.8e-215 753.1 632 65.2
arahy.Tifrunner.gnm1.ann1.SJ0MJA Arachis hypogaea HOM05D001026 ORTHO05D005232 1.7e-210 736.5 624 63.0
arahy.Tifrunner.gnm1.ann1.H5V4Y1 Arachis hypogaea HOM05D001026 ORTHO05D005232 1.9e-209 733.0 624 62.2
TPR.G14449 Trifolium pratense HOM05D001026 ORTHO05D005232 1.4e-207 726.9 637 59.8
VMungo0647G2280 Vigna mungo HOM05D001026 ORTHO05D005232 7.0e-204 714.5 650 59.7
HanXRQChr09g0248911 Helianthus annuus HOM05D001026 ORTHO05D005232 9.1e-204 714.1 632 61.2
Lsat_1_v5_gn_9_73921 Lactuca sativa HOM05D001026 ORTHO05D005232 1.2e-203 713.8 630 60.5
HanXRQChr12g0379801 Helianthus annuus HOM05D001026 ORTHO05D005232 1.5e-201 706.8 631 61.0
arahy.Tifrunner.gnm1.ann1.1274C3 Arachis hypogaea HOM05D001026 ORTHO05D005232 1.8e-199 699.9 766 51.7
arahy.Tifrunner.gnm1.ann1.Z84UIM Arachis hypogaea HOM05D001026 ORTHO05D005232 1.1e-196 690.6 780 50.8
ECA232G4443 Erigeron canadensis HOM05D001026 ORTHO05D005232 7.8e-195 684.5 572 62.9
Glyma.02G270100 Glycine max HOM05D001026 ORTHO05D005232 1.2e-190 670.6 625 58.9
Os01g0303200 Oryza sativa ssp. japonica HOM05D001026 ORTHO05D005232 1.2e-190 670.6 627 57.1
Phvul.008G211900 Phaseolus vulgaris HOM05D001026 ORTHO05D005232 4.9e-189 665.2 630 58.6
Zm00001eb130190 Zea mays HOM05D001026 ORTHO05D005232 1.4e-188 663.7 627 56.0
Os05g0355133 Oryza sativa ssp. japonica HOM05D001026 ORTHO05D005232 7.0e-188 661.4 629 56.6
CDE10G1069 Ceratophyllum demersum HOM05D001026 ORTHO05D005232 1.3e-186 657.1 560 61.2
Zm00001eb286080 Zea mays HOM05D001026 ORTHO05D005232 9.5e-185 651.0 630 56.3
Zm00001eb288650 Zea mays HOM05D001026 ORTHO05D005232 1.8e-183 646.7 630 56.0
Actinidia30796 Actinidia chinensis HOM05D001026 ORTHO05D005232 4.3e-161 572.4 608 55.4
SEGI_18178 Sequoiadendron giganteum HOM05D001026 ORTHO05D005232 6.9e-159 565.1 559 54.2
SHI20583 Sapria himalayana HOM05D001026 ORTHO05D005232 3.4e-150 536.2 531 54.8
AagrBONN_evm.TU.Sc2ySwM_228.1520 Anthoceros agrestis HOM05D001026 ORTHO05D005232 5.3e-127 459.1 651 42.2
Mapoly0104s0038 Marchantia polymorpha HOM05D001026 ORTHO05D005232 9.3e-124 448.4 653 43.5
SMO356G0157 Selaginella moellendorffii HOM05D001026 ORTHO05D005232 6.1e-107 392.5 610 39.8
Pp3c2_15510 Physcomitrium patens HOM05D001026 ORTHO05D005232 1.5e-100 371.3 636 38.2
Pp3c1_27170 Physcomitrium patens HOM05D001026 ORTHO05D005232 9.4e-100 368.6 639 36.5
CBR_g5699 Chara braunii HOM05D001026 ORTHO05D005232 3.5e-94 350.1 832 33.4
SMO134G0184 Selaginella moellendorffii HOM05D001026 ORTHO05D005232 8.0e-83 312.4 505 37.0
Psat7g123360 Pisum sativum HOM05D002169 ORTHO05D006577 2.6e-65 254.2 173 67.6
Psat0s5307g0040 Pisum sativum HOM05D001026 ORTHO05D005232 6.0e-38 163.3 142 63.4
Psat4g114320 Pisum sativum HOM05D001026 ORTHO05D005232 2.8e-35 154.5 163 55.8
Psat0s3076g0120 Pisum sativum HOM05D003435 ORTHO05D004032 1.8e-34 151.8 193 49.2
arahy.Tifrunner.gnm1.ann1.WH8Y2A Arachis hypogaea HOM05D001026 ORTHO05D005232 1.8e-29 135.2 72 87.5
Psat1g107360 Pisum sativum HOM05D001026 ORTHO05D005232 1.5e-28 132.1 90 73.3
Psat0s3521g0080 Pisum sativum HOM05D000555 ORTHO05D001906 1.4e-26 125.6 88 72.7
Psat4g129920 Pisum sativum HOM05D003435 ORTHO05D004032 2.0e-25 121.7 79 75.9
CDE10G0833 Ceratophyllum demersum HOM05D001026 ORTHO05D023993 5.8e-25 120.2 79 74.7
C05p28240 Brassica napus HOM05D001026 ORTHO05D023993 4.3e-20 104.0 109 48.6
BolC5t31548H Brassica oleracea HOM05D001026 ORTHO05D023993 4.3e-20 104.0 109 48.6
BcaC05g26968 Brassica carinata HOM05D001026 ORTHO05D023993 1.3e-19 102.4 111 49.5
Psat4g066520 Pisum sativum HOM05D001026 ORTHO05D007418 1.9e-15 88.6 64 67.2
Psat4g159480 Pisum sativum HOM05D002169 ORTHO05D006577 6.0e-14 83.6 69 52.2
Psat0s2339g0080 Pisum sativum HOM05D001026 ORTHO05D005232 7.9e-14 83.2 163 38.7
Cre10.g457150 Chlamydomonas reinhardtii HOM05D001026 ORTHO05D005232 6.7e-13 80.1 177 32.8
Psat0s3199g0080 Pisum sativum HOM05D000071 ORTHO05D022797 5.7e-12 77.0 45 82.2
BcaB07g32536 Brassica carinata HOM05D001026 ORTHO05D023993 2.8e-11 74.7 111 40.5
PRCOL_00002948 Prasinoderma coloniale HOM05D001026 ORTHO05D005232 1.6e-06 58.9 301 24.3


User provided reference genes

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