Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv05858 Davidia involucrata HOM05D001026 ORTHO05D005232 6.6e-207 723.8 361 100.0
TAR381G1087 Trochodendron aralioides HOM05D001026 ORTHO05D005232 5.3e-188 661.0 360 88.9
Nn7g37838 Nelumbo nucifera HOM05D001026 ORTHO05D005232 2.0e-187 659.1 360 88.9
Actinidia30796 Actinidia chinensis HOM05D001026 ORTHO05D005232 3.4e-187 658.3 360 90.0
CAN.G1173.1 Capsicum annuum HOM05D001026 ORTHO05D005232 9.3e-185 650.2 360 88.3
vmacro21290 Vaccinium macrocarpon HOM05D001026 ORTHO05D005232 7.9e-184 647.1 360 88.3
GSVIVG01009085001 Vitis vinifera HOM05D001026 ORTHO05D005232 2.3e-183 645.6 360 86.7
Aqoxy6G00082 Aquilegia oxysepala HOM05D001026 ORTHO05D005232 5.1e-183 644.4 360 86.4
Hma1.2p1_0593F.1_g185750 Hydrangea macrophylla HOM05D001026 ORTHO05D005232 8.7e-183 643.7 360 89.2
Duzib041G0801 Durio zibethinus HOM05D001026 ORTHO05D005232 1.9e-182 642.5 360 86.9
CiPaw.15G045700 Carya illinoinensis HOM05D001026 ORTHO05D005232 4.3e-182 641.3 360 86.9
Solyc04g074720.3 Solanum lycopersicum HOM05D001026 ORTHO05D005232 5.6e-182 641.0 360 86.7
Rhsim06G0077700 Rhododendron simsii HOM05D001026 ORTHO05D005232 1.3e-181 639.8 367 86.6
Sopen04g029690 Solanum pennellii HOM05D001026 ORTHO05D005232 1.3e-181 639.8 360 86.7
Oeu029742.2 Olea europaea HOM05D001026 ORTHO05D005232 3.7e-181 638.3 360 85.8
Ciclev10000130m.g Citrus clementina HOM05D001026 ORTHO05D005232 4.8e-181 637.9 360 86.4
Gohir.A03G045800 Gossypium hirsutum HOM05D001026 ORTHO05D005232 4.8e-181 637.9 360 86.4
Gohir.D03G121400 Gossypium hirsutum HOM05D001026 ORTHO05D005232 4.8e-181 637.9 360 86.4
Gorai.003G128400 Gossypium raimondii HOM05D001026 ORTHO05D005232 4.8e-181 637.9 360 86.4
TWI56G0493 Tripterygium wilfordii HOM05D001026 ORTHO05D005232 6.9e-180 634.0 360 85.6
PSO447G0261 Papaver somniferum HOM05D001026 ORTHO05D005232 9.0e-180 633.6 357 85.4
QL02p002343 Quercus lobata HOM05D001026 ORTHO05D005232 2.0e-179 632.5 357 87.1
Thecc.08G101700 Theobroma cacao HOM05D001026 ORTHO05D005232 2.0e-179 632.5 356 86.5
Manes.18G063378 Manihot esculenta HOM05D001026 ORTHO05D005232 3.4e-179 631.7 360 85.8
Sabra02G0079000 Salix brachista HOM05D001026 ORTHO05D005232 3.4e-179 631.7 360 84.7
SalBow7G3028 Salvia bowleyana HOM05D001026 ORTHO05D005232 3.4e-179 631.7 360 85.6
Eucgr.B00041 Eucalyptus grandis HOM05D001026 ORTHO05D005232 4.5e-179 631.3 360 85.0
Prupe.1G523400 Prunus persica HOM05D001026 ORTHO05D005232 5.8e-179 630.9 360 85.6
Cfa017894 Carpinus fangiana HOM05D001026 ORTHO05D005232 7.6e-179 630.6 360 85.8
RcHm_v2.0_Chr7g0238491 Rosa chinensis HOM05D001026 ORTHO05D005232 7.6e-179 630.6 360 85.6
MSTRG.24986 Avicennia marina HOM05D001026 ORTHO05D005232 2.2e-178 629.0 360 85.3
MD08G1188800 Malus domestica HOM05D001026 ORTHO05D005232 3.8e-178 628.2 360 85.8
Peaxi162Scf00030g02517 Petunia axillaris HOM05D001026 ORTHO05D005232 6.5e-178 627.5 360 86.1
ClCG11G014330 Citrullus lanatus HOM05D001026 ORTHO05D005232 8.4e-178 627.1 364 86.3
PSO700G0312 Papaver somniferum HOM05D001026 ORTHO05D005232 8.4e-178 627.1 357 84.9
Potri.002G100800 Populus trichocarpa HOM05D001026 ORTHO05D005232 8.4e-178 627.1 360 84.2
Migut.C00225 Erythranthe guttata HOM05D001026 ORTHO05D005232 3.2e-177 625.2 360 84.4
Nitab4.5_0005108g0010 Nicotiana tabacum HOM05D001026 ORTHO05D005232 7.1e-177 624.0 360 85.8
Manes.02G148900 Manihot esculenta HOM05D001026 ORTHO05D005232 9.3e-177 623.6 360 83.9
Atru.chr13.1116 Acer truncatum HOM05D001026 ORTHO05D005232 1.2e-176 623.2 360 83.6
Cc10_g06660 Coffea canephora HOM05D001026 ORTHO05D005232 3.5e-176 621.7 360 84.2
FvH4_5g36450 Fragaria vesca HOM05D001026 ORTHO05D005232 3.5e-176 621.7 360 84.4
SGA_v2.0_scaffold74G24568 Striga asiatica HOM05D001026 ORTHO05D005232 6.0e-176 620.9 360 83.1
COL.COLO4_12005 Corchorus olitorius HOM05D001026 ORTHO05D005232 1.3e-175 619.8 368 82.3
CsaV3_3G047720 Cucumis sativus L. HOM05D001026 ORTHO05D005232 3.9e-175 618.2 344 88.7
THA.LOC104816596 Tarenaya hassleriana HOM05D001026 ORTHO05D005232 5.1e-175 617.8 360 82.8
MBI06_g22313_MAGBIO Magnolia biondii HOM05D001026 ORTHO05D005232 1.5e-174 616.3 404 77.0
Sp1g25380 Schrenkiella parvula HOM05D001026 ORTHO05D005232 9.6e-174 613.6 360 80.6
Thhalv10006673m.g Eutrema salsugineum HOM05D001026 ORTHO05D005232 8.2e-173 610.5 360 80.6
BcaB03g13886 Brassica carinata HOM05D001026 ORTHO05D005232 3.1e-172 608.6 360 80.6
FAN18G1967 Fragaria x ananassa HOM05D001026 ORTHO05D005232 4.1e-172 608.2 385 78.4
Lsat_1_v5_gn_9_73921 Lactuca sativa HOM05D001026 ORTHO05D005232 5.3e-172 607.8 360 82.8
Sed0011558 Sechium edule HOM05D001026 ORTHO05D005232 9.0e-172 607.1 364 83.8
FAN08G3634 Fragaria x ananassa HOM05D001026 ORTHO05D005232 5.8e-171 604.4 385 78.2
VMungo0540G1065 Vigna mungo HOM05D001026 ORTHO05D005232 5.8e-171 604.4 358 83.8
Medtr3g080120 Medicago truncatula HOM05D001026 ORTHO05D005232 7.6e-171 604.0 359 82.5
Lj6g0009212 Lotus japonicus HOM05D001026 ORTHO05D005232 2.2e-170 602.4 350 84.0
Aa31LG6G8880 Aethionema arabicum HOM05D001026 ORTHO05D005232 3.8e-170 601.7 360 80.6
Carub.0001s3287 Capsella rubella HOM05D001026 ORTHO05D005232 3.8e-170 601.7 360 79.7
Sed0018981 Sechium edule HOM05D001026 ORTHO05D005232 3.8e-170 601.7 364 83.2
BraA07t28862Z Brassica rapa HOM05D001026 ORTHO05D005232 5.0e-170 601.3 360 80.6
FAN04G2218 Fragaria x ananassa HOM05D001026 ORTHO05D005232 5.0e-170 601.3 396 76.5
Solyc12g057130.3 Solanum lycopersicum HOM05D001026 ORTHO05D005232 5.0e-170 601.3 356 80.9
FAN13G1430 Fragaria x ananassa HOM05D001026 ORTHO05D005232 6.5e-170 600.9 378 79.4
CARHR286320 Cardamine hirsuta HOM05D001026 ORTHO05D005232 8.4e-170 600.5 360 79.7
Glyma.20G056600 Glycine max HOM05D001026 ORTHO05D005232 1.1e-169 600.1 358 83.8
BcaC06g35430 Brassica carinata HOM05D001026 ORTHO05D005232 1.4e-169 599.7 360 80.3
A07p10680 Brassica napus HOM05D001026 ORTHO05D005232 1.4e-169 599.7 360 80.3
C07p16280 Brassica napus HOM05D001026 ORTHO05D005232 1.4e-169 599.7 360 80.3
BolC7t42122H Brassica oleracea HOM05D001026 ORTHO05D005232 1.4e-169 599.7 360 80.3
Sc01g0000810 Simmondsia chinensis HOM05D001026 ORTHO05D005232 1.4e-169 599.7 339 86.1
TPR.G34506 Trifolium pratense HOM05D001026 ORTHO05D005232 1.9e-169 599.4 332 87.0
AT1G35220 Arabidopsis thaliana HOM05D001026 ORTHO05D005232 3.2e-169 598.6 360 79.4
Phvul.L003337 Phaseolus vulgaris HOM05D001026 ORTHO05D005232 5.5e-169 597.8 355 83.7
CANSAT64G2709 Cannabis sativa HOM05D001026 ORTHO05D005232 9.3e-169 597.0 356 81.7
AL1G49940 Arabidopsis lyrata HOM05D001026 ORTHO05D005232 2.1e-168 595.9 360 78.9
Ah.05g169670 Amaranthus hybridus HOM05D001026 ORTHO05D005232 2.7e-168 595.5 353 81.6
Ca_16276_v3 Cicer arietinum L. HOM05D001026 ORTHO05D005232 2.7e-168 595.5 359 82.2
Lalb_Chr18g0048141 Lupinus albus HOM05D001026 ORTHO05D005232 2.7e-168 595.5 359 81.1
DCAR_009580 Daucus carota HOM05D001026 ORTHO05D005232 3.5e-168 595.1 360 80.6
Psat5g110840 Pisum sativum HOM05D001026 ORTHO05D005232 4.6e-168 594.7 359 81.1
arahy.Tifrunner.gnm1.ann1.SJ0MJA Arachis hypogaea HOM05D001026 ORTHO05D005232 2.3e-167 592.4 331 85.5
arahy.Tifrunner.gnm1.ann1.H5V4Y1 Arachis hypogaea HOM05D001026 ORTHO05D005232 3.0e-167 592.0 331 85.2
ECA232G4443 Erigeron canadensis HOM05D001026 ORTHO05D005232 3.3e-166 588.6 360 81.4
HanXRQChr09g0248911 Helianthus annuus HOM05D001026 ORTHO05D005232 7.4e-166 587.4 358 82.1
ECA247G3686 Erigeron canadensis HOM05D001026 ORTHO05D005232 1.8e-164 582.8 353 80.5
Lsat_1_v5_gn_1_3061 Lactuca sativa HOM05D001026 ORTHO05D005232 1.2e-163 580.1 352 80.7
Medtr5g085880 Medicago truncatula HOM05D001026 ORTHO05D005232 7.7e-163 577.4 356 80.3
Lalb_Chr17g0347341 Lupinus albus HOM05D001026 ORTHO05D005232 1.0e-162 577.0 353 80.2
Os01g0303200 Oryza sativa ssp. japonica HOM05D001026 ORTHO05D005232 2.5e-161 572.4 336 79.8
LjContig00564g0017936 Lotus japonicus HOM05D001026 ORTHO05D005232 1.2e-160 570.1 355 77.5
HanXRQChr12g0379801 Helianthus annuus HOM05D001026 ORTHO05D005232 7.9e-160 567.4 353 78.5
Psat2g022120 Pisum sativum HOM05D001026 ORTHO05D005232 6.7e-159 564.3 356 76.4
Glyma.02G270100 Glycine max HOM05D001026 ORTHO05D005232 8.2e-157 557.4 355 75.8
Nitab4.5_0000786g0020 Nicotiana tabacum HOM05D001026 ORTHO05D005232 8.2e-157 557.4 360 79.2
HPP92_016948 Vanilla planifolia HOM05D001026 ORTHO05D005232 8.2e-157 557.4 350 79.1
EL10Ac1g01144 Beta vulgaris HOM05D001026 ORTHO05D005232 5.3e-156 554.7 354 77.4
TPR.G14449 Trifolium pratense HOM05D001026 ORTHO05D005232 9.1e-156 553.9 366 75.1
Zm00001eb288650 Zea mays HOM05D001026 ORTHO05D005232 2.2e-154 549.3 340 75.3
Dinv07074 Davidia involucrata HOM05D001026 ORTHO05D005232 2.9e-154 548.9 278 98.9
ATR0684G075 Amborella trichopoda HOM05D001026 ORTHO05D005232 3.8e-154 548.5 307 85.7
Manes.18G025208 Manihot esculenta HOM05D001026 ORTHO05D005232 3.6e-152 542.0 360 76.1
VMungo0647G2280 Vigna mungo HOM05D001026 ORTHO05D005232 7.9e-152 540.8 355 73.8
Sopen12g029790 Solanum pennellii HOM05D001026 ORTHO05D005232 1.8e-151 539.7 313 83.1
arahy.Tifrunner.gnm1.ann1.1274C3 Arachis hypogaea HOM05D001026 ORTHO05D005232 5.1e-151 538.1 355 73.0
Glyma.13G027300 Glycine max HOM05D001026 ORTHO05D005232 9.7e-150 533.9 316 84.2
Lj4C96G17 Lonicera japonica HOM05D001026 ORTHO05D005232 2.2e-149 532.7 359 76.0
arahy.Tifrunner.gnm1.ann1.Z84UIM Arachis hypogaea HOM05D001026 ORTHO05D005232 2.0e-147 526.2 374 69.0
Os05g0355133 Oryza sativa ssp. japonica HOM05D001026 ORTHO05D005232 5.9e-147 524.6 340 72.4
Phvul.008G211900 Phaseolus vulgaris HOM05D001026 ORTHO05D005232 1.9e-145 519.6 355 72.1
MELO3C003550.2 Cucumis melo HOM05D001026 ORTHO05D005232 4.2e-145 518.5 430 65.6
Gorai.010G037700 Gossypium raimondii HOM05D001026 ORTHO05D005232 2.4e-140 502.7 360 69.7
AUR62018974 Chenopodium quinoa HOM05D001026 ORTHO05D005232 4.5e-139 498.4 376 69.7
PGSC0003DMG400017755 Solanum tuberosum HOM05D001026 ORTHO05D005232 1.3e-138 496.9 356 70.5
Ca_06108_v3 Cicer arietinum L. HOM05D001026 ORTHO05D005232 6.5e-138 494.6 382 68.1
SMO356G0157 Selaginella moellendorffii HOM05D001026 ORTHO05D005232 1.3e-133 480.3 323 68.1
Mapoly0104s0038 Marchantia polymorpha HOM05D001026 ORTHO05D005232 1.7e-133 479.9 334 67.4
AagrBONN_evm.TU.Sc2ySwM_228.1520 Anthoceros agrestis HOM05D001026 ORTHO05D005232 5.4e-132 474.9 325 68.9
Hund16887 Selenicereus undatus HOM05D001026 ORTHO05D005232 7.0e-132 474.6 353 68.6
Zm00001eb130190 Zea mays HOM05D001026 ORTHO05D005232 2.0e-123 446.4 269 78.1
Pp3c1_27170 Physcomitrium patens HOM05D001026 ORTHO05D005232 2.3e-122 443.0 331 65.3
Pp3c2_15510 Physcomitrium patens HOM05D001026 ORTHO05D005232 1.5e-121 440.3 326 65.6
SMO134G0184 Selaginella moellendorffii HOM05D001026 ORTHO05D005232 6.1e-120 434.9 332 59.6
AUR62027815 Chenopodium quinoa HOM05D001026 ORTHO05D005232 1.5e-118 430.3 360 64.4
Gohir.D06G034200 Gossypium hirsutum HOM05D001026 ORTHO05D005232 5.7e-118 428.3 265 79.2
CBR_g5699 Chara braunii HOM05D001026 ORTHO05D005232 9.8e-118 427.6 341 62.2
unitig_46.g17923 Utricularia gibba HOM05D001026 ORTHO05D005232 2.5e-105 386.3 220 85.9
CDE10G1069 Ceratophyllum demersum HOM05D001026 ORTHO05D005232 2.8e-104 382.9 359 59.1
MD15G1376600 Malus domestica HOM05D001026 ORTHO05D005232 3.6e-104 382.5 205 86.3
Psat0s5307g0040 Pisum sativum HOM05D001026 ORTHO05D005232 7.5e-102 374.8 297 68.7
Psat4g114320 Pisum sativum HOM05D001026 ORTHO05D005232 1.1e-100 370.9 286 69.6
Psat3g111360 Pisum sativum HOM05D001026 ORTHO05D005232 1.2e-96 357.5 270 70.0
CSS0035277 Camellia sinensis var. sinensis HOM05D001026 ORTHO05D005232 2.1e-96 356.7 208 86.1
Haze_18259 Corylus avellana HOM05D001026 ORTHO05D005232 1.2e-91 340.9 208 82.7
Gohir.A06G033300 Gossypium hirsutum HOM05D001026 ORTHO05D005232 1.9e-84 317.0 208 76.0
Zm00001eb286080 Zea mays HOM05D001026 ORTHO05D005232 1.0e-82 311.2 198 76.8
Haze_18261 Corylus avellana HOM05D001026 ORTHO05D005232 5.3e-79 298.9 162 85.2
SHI20581 Sapria himalayana HOM05D001026 ORTHO05D005232 2.4e-76 290.0 191 75.9
Hund26990 Selenicereus undatus HOM05D001026 ORTHO05D005232 5.6e-73 278.9 150 86.0
Cre10.g457150 Chlamydomonas reinhardtii HOM05D001026 ORTHO05D005232 2.5e-65 253.4 330 42.1
MD15G1376700 Malus domestica HOM05D001026 ORTHO05D005232 1.8e-58 230.7 162 74.7
arahy.Tifrunner.gnm1.ann1.WH8Y2A Arachis hypogaea HOM05D001026 ORTHO05D005232 2.4e-55 220.3 134 79.9
SHI20572 Sapria himalayana HOM05D001026 ORTHO05D005232 4.3e-49 199.5 114 78.1
SEGI_27036 Sequoiadendron giganteum HOM05D001026 ORTHO05D005232 5.7e-41 172.6 90 82.2
Psat3g007920 Pisum sativum HOM05D001026 ORTHO05D005232 3.7e-40 169.9 150 58.0
QL02p059881 Quercus lobata HOM05D001026 ORTHO05D005232 1.7e-37 161.0 115 77.4
PRCOL_00002948 Prasinoderma coloniale HOM05D001026 ORTHO05D005232 8.5e-37 158.7 376 31.9
Psat1g107360 Pisum sativum HOM05D001026 ORTHO05D005232 4.2e-36 156.4 124 69.4
Hund26991 Selenicereus undatus HOM05D001026 ORTHO05D005232 5.7e-33 146.0 106 80.2
HPP92_016951 Vanilla planifolia HOM05D001026 ORTHO05D005232 1.1e-31 141.7 77 83.1
SEGI_36321 Sequoiadendron giganteum HOM05D001026 ORTHO05D005232 1.2e-30 138.3 84 72.6
Psat0s2339g0080 Pisum sativum HOM05D001026 ORTHO05D005232 4.7e-27 126.3 108 66.7
Psat0s1135g0080 Pisum sativum HOM05D001026 ORTHO05D005232 4.8e-24 116.3 96 60.4
Psat3g111480 Pisum sativum HOM05D001026 ORTHO05D008599 7.7e-22 109.0 101 62.4
Psat4g129920 Pisum sativum HOM05D003435 ORTHO05D004032 3.8e-13 80.1 75 60.0
SHI20575 Sapria himalayana HOM05D001026 ORTHO05D005232 5.5e-12 76.3 75 54.7
Psat3g007840 Pisum sativum HOM05D001026 ORTHO05D005232 2.3e-10 70.9 65 55.4
Psat0s3076g0120 Pisum sativum HOM05D003435 ORTHO05D004032 1.2e-06 58.5 85 45.9


User provided reference genes

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