Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv05830 Davidia involucrata HOM05D004304 ORTHO05D005229 8.4e-63 243.4 115 100.0
Dinv21270 Davidia involucrata HOM05D004304 ORTHO05D005229 2.2e-47 192.2 94 94.7
CSS0022075 Camellia sinensis var. sinensis HOM05D004304 ORTHO05D005229 3.5e-45 184.9 111 79.3
CSS0042456 Camellia sinensis var. sinensis HOM05D004304 ORTHO05D005229 3.5e-45 184.9 94 89.4
Manes.12G061000 Manihot esculenta HOM05D004304 ORTHO05D005229 1.3e-44 183.0 111 79.3
Actinidia07885 Actinidia chinensis HOM05D004304 ORTHO05D005229 2.3e-44 182.2 94 88.3
Actinidia21445 Actinidia chinensis HOM05D004304 ORTHO05D005229 2.3e-44 182.2 94 88.3
AUR62017517 Chenopodium quinoa HOM05D004304 ORTHO05D005229 2.3e-44 182.2 111 77.5
Nitab4.5_0000441g0110 Nicotiana tabacum HOM05D004304 ORTHO05D005229 3.0e-44 181.8 94 87.2
Nitab4.5_0004642g0020 Nicotiana tabacum HOM05D004304 ORTHO05D005229 3.0e-44 181.8 94 87.2
Potri.014G165300 Populus trichocarpa HOM05D004304 ORTHO05D005229 3.0e-44 181.8 94 87.2
CAN.G854.8 Capsicum annuum HOM05D004304 ORTHO05D005229 3.9e-44 181.4 111 77.5
Rhsim04G0038800 Rhododendron simsii HOM05D004304 ORTHO05D005229 3.9e-44 181.4 84 97.6
THA.LOC104826653 Tarenaya hassleriana HOM05D004304 ORTHO05D005229 3.9e-44 181.4 94 87.2
vmacro09397 Vaccinium macrocarpon HOM05D004304 ORTHO05D005229 3.9e-44 181.4 94 86.2
Sopen07g024320 Solanum pennellii HOM05D004304 ORTHO05D005229 5.1e-44 181.0 94 87.2
PGSC0003DMG400006152 Solanum tuberosum HOM05D004304 ORTHO05D005229 5.1e-44 181.0 94 87.2
Actinidia09779 Actinidia chinensis HOM05D004304 ORTHO05D005229 8.7e-44 180.3 111 79.3
Ciclev10017178m.g Citrus clementina HOM05D004304 ORTHO05D005229 8.7e-44 180.3 94 86.2
Cc00_g07360 Coffea canephora HOM05D004304 ORTHO05D005229 8.7e-44 180.3 94 87.2
Dinv07865 Davidia involucrata HOM05D004304 ORTHO05D005229 8.7e-44 180.3 94 86.2
Duzib138G0739 Durio zibethinus HOM05D004304 ORTHO05D005229 8.7e-44 180.3 94 86.2
Duzib138G1664 Durio zibethinus HOM05D004304 ORTHO05D005229 8.7e-44 180.3 94 86.2
PGR042G2803 Punica granatum HOM05D004304 ORTHO05D005229 8.7e-44 180.3 94 85.1
Thecc.01G191600 Theobroma cacao HOM05D004304 ORTHO05D005229 8.7e-44 180.3 94 86.2
GSVIVG01030050001 Vitis vinifera HOM05D004304 ORTHO05D005229 8.7e-44 180.3 111 78.4
CANSAT64G1042 Cannabis sativa HOM05D004304 ORTHO05D005229 1.1e-43 179.9 94 86.2
ClCG02G009350 Citrullus lanatus HOM05D004304 ORTHO05D005229 1.1e-43 179.9 111 78.4
Gohir.A11G149700 Gossypium hirsutum HOM05D004304 ORTHO05D005229 1.1e-43 179.9 94 86.2
Gohir.D11G156380 Gossypium hirsutum HOM05D004304 ORTHO05D005229 1.1e-43 179.9 94 86.2
Gorai.007G166800 Gossypium raimondii HOM05D004304 ORTHO05D005229 1.1e-43 179.9 94 86.2
Sed0000663 Sechium edule HOM05D004304 ORTHO05D005229 1.1e-43 179.9 111 78.4
ECA240G0131 Erigeron canadensis HOM05D001343 ORTHO05D002008 1.5e-43 179.5 94 86.2
HanXRQChr03g0075261 Helianthus annuus HOM05D004304 ORTHO05D005229 1.5e-43 179.5 94 86.2
Manes.13G062800 Manihot esculenta HOM05D004304 ORTHO05D005229 1.5e-43 179.5 83 97.6
Prupe.3G200700 Prunus persica HOM05D004304 ORTHO05D005229 1.9e-43 179.1 94 86.2
Sed0023039 Sechium edule HOM05D004304 ORTHO05D005229 2.5e-43 178.7 85 95.3
THA.LOC104819042 Tarenaya hassleriana HOM05D004304 ORTHO05D005229 2.5e-43 178.7 94 86.2
CsaV3_6G009500 Cucumis sativus L. HOM05D004304 ORTHO05D005229 3.3e-43 178.3 111 77.5
FvH4_6g40920 Fragaria vesca HOM05D004304 ORTHO05D005229 3.3e-43 178.3 111 76.6
FAN05G0096 Fragaria x ananassa HOM05D004304 ORTHO05D005229 3.3e-43 178.3 111 76.6
Hma1.2p1_0133F.1_g061310 Hydrangea macrophylla HOM05D004304 ORTHO05D005229 3.3e-43 178.3 94 86.2
RcHm_v2.0_Chr2g0156501 Rosa chinensis HOM05D004304 ORTHO05D005229 3.3e-43 178.3 111 76.6
Solyc12g006160.2 Solanum lycopersicum HOM05D004304 ORTHO05D005229 3.3e-43 178.3 94 85.1
Sopen12g002110 Solanum pennellii HOM05D004304 ORTHO05D005229 3.3e-43 178.3 94 85.1
PGSC0003DMG400028823 Solanum tuberosum HOM05D004304 ORTHO05D005229 3.3e-43 178.3 94 85.1
CiPaw.03G279300 Carya illinoinensis HOM05D004304 ORTHO05D005229 4.3e-43 177.9 94 86.2
Duzib133G1241 Durio zibethinus HOM05D004304 ORTHO05D005229 4.3e-43 177.9 94 85.1
TWI75G1244 Tripterygium wilfordii HOM05D004304 ORTHO05D005229 4.3e-43 177.9 94 86.2
FAN14G5814 Fragaria x ananassa HOM05D004304 ORTHO05D005229 5.6e-43 177.6 93 86.0
Atru.chr6.3369 Acer truncatum HOM05D004304 ORTHO05D005229 7.3e-43 177.2 94 85.1
CAN.G294.16 Capsicum annuum HOM05D004304 ORTHO05D005229 7.3e-43 177.2 111 74.8
DCAR_019709 Daucus carota HOM05D004304 ORTHO05D005229 7.3e-43 177.2 111 75.7
MD17G1113700 Malus domestica HOM05D004304 ORTHO05D005229 7.3e-43 177.2 94 85.1
Nitab4.5_0001229g0110 Nicotiana tabacum HOM05D004304 ORTHO05D005229 7.3e-43 177.2 94 85.1
Nitab4.5_0005511g0040 Nicotiana tabacum HOM05D004304 ORTHO05D005229 7.3e-43 177.2 94 85.1
vmacro12102 Vaccinium macrocarpon HOM05D004304 ORTHO05D005229 7.3e-43 177.2 94 84.0
Aqoxy1G04225 Aquilegia oxysepala HOM05D004304 ORTHO05D005229 9.6e-43 176.8 94 84.0
FAN02G3860 Fragaria x ananassa HOM05D004304 ORTHO05D005229 9.6e-43 176.8 111 75.7
FAN09G2975 Fragaria x ananassa HOM05D004304 ORTHO05D005229 9.6e-43 176.8 111 75.7
MD09G1123200 Malus domestica HOM05D004304 ORTHO05D005229 9.6e-43 176.8 94 85.1
MSTRG.14924 Avicennia marina HOM05D004304 ORTHO05D005229 1.3e-42 176.4 92 85.9
MELO3C025975.2 Cucumis melo HOM05D004304 ORTHO05D005229 1.3e-42 176.4 111 76.6
Gohir.A07G087600 Gossypium hirsutum HOM05D004304 ORTHO05D005229 1.3e-42 176.4 111 75.7
TWI18G0278 Tripterygium wilfordii HOM05D004304 ORTHO05D005229 1.6e-42 176.0 87 92.0
Nn1g07447 Nelumbo nucifera HOM05D004304 ORTHO05D005229 2.1e-42 175.6 94 83.0
Sc20g0003970 Simmondsia chinensis HOM05D004304 ORTHO05D005229 2.1e-42 175.6 109 76.1
Eucgr.A01049 Eucalyptus grandis HOM05D004304 ORTHO05D005229 2.8e-42 175.3 94 84.0
Glyma.02G305100 Glycine max HOM05D004304 ORTHO05D005229 2.8e-42 175.3 94 85.1
Gohir.D07G092500 Gossypium hirsutum HOM05D004304 ORTHO05D005229 2.8e-42 175.3 111 75.7
Gorai.001G099100 Gossypium raimondii HOM05D004304 ORTHO05D005229 2.8e-42 175.3 111 75.7
Medtr5g097240 Medicago truncatula HOM05D004304 ORTHO05D005229 2.8e-42 175.3 94 85.1
Phvul.008G284800 Phaseolus vulgaris HOM05D004304 ORTHO05D005229 2.8e-42 175.3 94 85.1
MSTRG.6645 Avicennia marina HOM05D004304 ORTHO05D005229 3.6e-42 174.9 92 85.9
CiPaw.04G196300 Carya illinoinensis HOM05D004304 ORTHO05D005229 3.6e-42 174.9 94 85.1
TAR624G1210 Trochodendron aralioides HOM05D004304 ORTHO05D005229 3.6e-42 174.9 94 84.0
SGA_v2.0_scaffold181G39677 Striga asiatica HOM05D004304 ORTHO05D005229 4.8e-42 174.5 92 85.9
TPR.G1269 Trifolium pratense HOM05D004304 ORTHO05D005229 4.8e-42 174.5 94 84.0
FvH4_5g30980 Fragaria vesca HOM05D004304 ORTHO05D005229 6.2e-42 174.1 92 84.8
FAN13G0518 Fragaria x ananassa HOM05D004304 ORTHO05D005229 6.2e-42 174.1 92 84.8
FAN18G2534 Fragaria x ananassa HOM05D004304 ORTHO05D005229 6.2e-42 174.1 92 84.8
Haze_12682 Corylus avellana HOM05D004304 ORTHO05D005229 1.1e-41 173.3 84 94.0
LjContig00081g0006376 Lotus japonicus HOM05D004304 ORTHO05D005229 1.1e-41 173.3 94 81.9
Glyma.14G008300 Glycine max HOM05D004304 ORTHO05D005229 1.4e-41 172.9 94 84.0
PGR142G2829 Punica granatum HOM05D004304 ORTHO05D005229 1.4e-41 172.9 94 83.0
QL08p028475 Quercus lobata HOM05D004304 ORTHO05D005229 1.4e-41 172.9 82 96.3
TAR627G0777 Trochodendron aralioides HOM05D004304 ORTHO05D005229 1.4e-41 172.9 111 74.8
VMungo0647G2439 Vigna mungo HOM05D004304 ORTHO05D005229 1.4e-41 172.9 83 95.2
FAN08G1359 Fragaria x ananassa HOM05D004304 ORTHO05D005229 1.8e-41 172.6 92 83.7
Gohir.D07G171200 Gossypium hirsutum HOM05D004304 ORTHO05D005229 3.1e-41 171.8 94 81.9
Gorai.001G191600 Gossypium raimondii HOM05D004304 ORTHO05D005229 3.1e-41 171.8 94 81.9
Gohir.A07G170000 Gossypium hirsutum HOM05D004304 ORTHO05D005229 4.0e-41 171.4 94 81.9
Migut.M00031 Erythranthe guttata HOM05D004304 ORTHO05D005229 5.3e-41 171.0 109 76.1
Lalb_Chr10g0107601 Lupinus albus HOM05D004304 ORTHO05D005229 5.3e-41 171.0 94 81.9
Os12g0514600 Oryza sativa ssp. japonica HOM05D004304 ORTHO05D005229 5.3e-41 171.0 94 80.9
HanXRQChr10g0306431 Helianthus annuus HOM05D004304 ORTHO05D005229 6.9e-41 170.6 94 80.9
arahy.Tifrunner.gnm1.ann1.40Z2MJ Arachis hypogaea HOM05D004304 ORTHO05D005229 9.0e-41 170.2 94 81.9
arahy.Tifrunner.gnm1.ann1.F2KZWM Arachis hypogaea HOM05D004304 ORTHO05D005229 9.0e-41 170.2 94 81.9
Lalb_Chr04g0247321 Lupinus albus HOM05D004304 ORTHO05D005229 9.0e-41 170.2 94 80.9
Lalb_Chr04g0247511 Lupinus albus HOM05D004304 ORTHO05D005229 9.0e-41 170.2 94 80.9
SGA_v2.0_scaffold73G24513 Striga asiatica HOM05D004304 ORTHO05D005229 2.0e-40 169.1 99 78.8
Zm00001eb137890 Zea mays HOM05D004304 ORTHO05D005229 2.0e-40 169.1 94 79.8
ATR1149G091 Amborella trichopoda HOM05D004304 ORTHO05D005229 2.6e-40 168.7 94 79.8
PSO210G6619 Papaver somniferum HOM05D004304 ORTHO05D005229 2.6e-40 168.7 111 71.2
RcHm_v2.0_Chr7g0226381 Rosa chinensis HOM05D004304 ORTHO05D005229 2.6e-40 168.7 94 80.9
PSO302G0206 Papaver somniferum HOM05D004304 ORTHO05D005229 3.4e-40 168.3 111 71.2
DCAR_012907 Daucus carota HOM05D004304 ORTHO05D005229 4.5e-40 167.9 79 96.2
Oeu012343.5 Olea europaea HOM05D005707 ORTHO05D007276 4.5e-40 167.9 93 79.6
CARHR082470 Cardamine hirsuta HOM05D004304 ORTHO05D005229 5.8e-40 167.5 111 72.1
Thhalv10021767m.g Eutrema salsugineum HOM05D004304 ORTHO05D005229 5.8e-40 167.5 111 72.1
Psat2g004600 Pisum sativum HOM05D004304 ORTHO05D005229 5.8e-40 167.5 83 90.4
Sp3g06690 Schrenkiella parvula HOM05D004304 ORTHO05D005229 5.8e-40 167.5 111 72.1
MSTRG.12237 Avicennia marina HOM05D004304 ORTHO05D005229 7.6e-40 167.2 106 72.6
Zm00001eb166190 Zea mays HOM05D004304 ORTHO05D005229 9.9e-40 166.8 94 78.7
CDE07G1815 Ceratophyllum demersum HOM05D004304 ORTHO05D005229 1.3e-39 166.4 94 77.7
Zm00001eb264410 Zea mays HOM05D004304 ORTHO05D005229 1.7e-39 166.0 94 77.7
AL3G19120 Arabidopsis lyrata HOM05D004304 ORTHO05D005229 2.2e-39 165.6 111 71.2
AT3G07760 Arabidopsis thaliana HOM05D004304 ORTHO05D005229 2.2e-39 165.6 111 71.2
SalBow7G0104 Salvia bowleyana HOM05D004304 ORTHO05D005229 2.2e-39 165.6 83 91.6
CDE04G0517 Ceratophyllum demersum HOM05D004304 ORTHO05D005229 4.9e-39 164.5 94 75.5
Carub.0003s0734 Capsella rubella HOM05D004304 ORTHO05D005229 6.4e-39 164.1 111 70.3
BcaC05g29569 Brassica carinata HOM05D004304 ORTHO05D005229 8.4e-39 163.7 111 70.3
A05p40460 Brassica napus HOM05D004304 ORTHO05D005229 8.4e-39 163.7 111 70.3
C05p59560 Brassica napus HOM05D004304 ORTHO05D005229 8.4e-39 163.7 111 70.3
BolC5t34611H Brassica oleracea HOM05D004304 ORTHO05D005229 8.4e-39 163.7 111 70.3
BraA05t22779Z Brassica rapa HOM05D004304 ORTHO05D005229 8.4e-39 163.7 111 70.3
HPP92_009568 Vanilla planifolia HOM05D004304 ORTHO05D005229 8.4e-39 163.7 93 77.4
Sabra14G0125900 Salix brachista HOM05D004304 ORTHO05D005229 1.4e-38 162.9 111 72.1
TWI36G1037 Tripterygium wilfordii HOM05D004304 ORTHO05D005229 4.2e-38 161.4 142 59.9
BraA03t12719Z Brassica rapa HOM05D004304 ORTHO05D005229 7.1e-38 160.6 111 69.4
Aa31LG5G18330 Aethionema arabicum HOM05D004304 ORTHO05D005229 9.3e-38 160.2 136 60.3
BcaC09g47944 Brassica carinata HOM05D004304 ORTHO05D005229 9.3e-38 160.2 108 71.3
A03p35420 Brassica napus HOM05D004304 ORTHO05D005229 9.3e-38 160.2 111 69.4
BcaB03g14683 Brassica carinata HOM05D004304 ORTHO05D005229 1.2e-37 159.8 110 69.1
BcaB04g21271 Brassica carinata HOM05D004304 ORTHO05D005229 2.1e-37 159.1 106 72.6
BolC1t05535H Brassica oleracea HOM05D004304 ORTHO05D005229 2.1e-37 159.1 106 72.6
BraA01t04365Z Brassica rapa HOM05D004304 ORTHO05D005229 2.7e-37 158.7 106 71.7
unitig_37.g12596 Utricularia gibba HOM05D004304 ORTHO05D005229 1.3e-36 156.4 96 76.0
SMO147G0193 Selaginella moellendorffii HOM05D004304 ORTHO05D005229 5.1e-36 154.5 93 74.2
SEGI_33416 Sequoiadendron giganteum HOM05D004304 ORTHO05D005229 1.9e-35 152.5 88 77.3
SEGI_10863 Sequoiadendron giganteum HOM05D004304 ORTHO05D005229 6.2e-34 147.5 94 67.0
Peaxi162Scf00047g02135 Petunia axillaris HOM05D004304 ORTHO05D005229 1.8e-33 146.0 78 85.9
Cpa.g.c46948 Carica papaya HOM05D004304 ORTHO05D005229 4.5e-32 141.4 65 100.0
MBI16_g26392_MAGBIO Magnolia biondii HOM05D004304 ORTHO05D005229 7.6e-32 140.6 82 76.8
FAN04G0826 Fragaria x ananassa HOM05D004304 ORTHO05D005229 1.0e-31 140.2 75 86.7
TAR624G0596 Trochodendron aralioides HOM05D004304 ORTHO05D005229 1.7e-31 139.4 77 80.5
Eucgr.K00654 Eucalyptus grandis HOM05D004304 ORTHO05D005229 2.2e-31 139.0 82 75.6
THA.LOC109116190 Tarenaya hassleriana HOM05D004304 ORTHO05D005229 6.0e-29 131.0 76 78.9
SHI10146 Sapria himalayana HOM05D004304 ORTHO05D005229 1.8e-28 129.4 64 92.2
Hund21536 Selenicereus undatus HOM05D004304 ORTHO05D005229 8.7e-28 127.1 58 98.3
FAN04G0834 Fragaria x ananassa HOM05D004304 ORTHO05D005229 4.3e-27 124.8 106 60.4
Lsat_1_v5_gn_9_104560 Lactuca sativa HOM05D004304 ORTHO05D005229 5.7e-27 124.4 60 93.3
BcaC01g04291 Brassica carinata HOM05D000074 ORTHO05D001293 2.8e-26 122.1 105 59.0
Ah.01g002230 Amaranthus hybridus HOM05D004304 ORTHO05D005229 5.3e-25 117.9 58 94.8
AUR62015060 Chenopodium quinoa HOM05D004304 ORTHO05D005229 2.7e-21 105.5 59 83.1
CSS0024587 Camellia sinensis var. sinensis HOM05D004304 ORTHO05D005229 7.9e-21 104.0 85 63.5
DCAR_021105 Daucus carota HOM05D004304 ORTHO05D005229 2.4e-17 92.4 47 87.2
BcaB03g16127 Brassica carinata HOM05D004304 ORTHO05D005229 2.0e-16 89.4 57 73.7
unitig_46.g18340 Utricularia gibba HOM05D004304 ORTHO05D005229 1.3e-15 86.7 41 90.2
Oeu040468.1 Olea europaea HOM05D004304 ORTHO05D005229 2.1e-13 79.3 46 76.1
Oeu063643.1 Olea europaea HOM05D004304 ORTHO05D005229 2.7e-13 79.0 63 61.9
BcaB04g17145 Brassica carinata HOM05D004304 ORTHO05D000003 1.5e-11 73.2 66 56.1
C03p43050 Brassica napus HOM05D004304 ORTHO05D005229 2.0e-11 72.8 94 42.6
BolC3t16573H Brassica oleracea HOM05D004304 ORTHO05D005229 2.0e-11 72.8 94 42.6
BcaB01g01337 Brassica carinata HOM05D004304 ORTHO05D005229 2.2e-10 69.3 63 55.6
Solyc07g047890.4 Solanum lycopersicum HOM05D004304 ORTHO05D393077 8.5e-07 57.4 69 42.0


User provided reference genes

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