Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv05788 Davidia involucrata HOM05D004717 ORTHO05D005636 6.0e-129 464.2 231 100.0
Dinv29031 Davidia involucrata HOM05D003687 ORTHO05D034002 6.0e-36 155.2 110 79.1
Dinv02673 Davidia involucrata HOM05D004717 ORTHO05D005636 5.6e-26 122.1 61 96.7
QL04p036080 Quercus lobata HOM05D004717 ORTHO05D005636 3.7e-17 92.8 61 75.4
Rhsim02G0074800 Rhododendron simsii HOM05D004717 ORTHO05D005636 2.4e-16 90.1 85 56.5
GSVIVG01038782001 Vitis vinifera HOM05D004717 ORTHO05D005636 9.0e-16 88.2 61 70.5
CiPaw.06G062200 Carya illinoinensis HOM05D004717 ORTHO05D005636 2.0e-15 87.0 61 72.1
Gorai.008G146900 Gossypium raimondii HOM05D004717 ORTHO05D005636 4.9e-14 82.4 61 65.6
Thecc.02G155400 Theobroma cacao HOM05D004717 ORTHO05D005636 6.5e-14 82.0 61 70.5
Duzib132G0983 Durio zibethinus HOM05D004717 ORTHO05D005636 8.4e-14 81.6 62 67.7
vmacro15638 Vaccinium macrocarpon HOM05D004717 ORTHO05D005636 2.5e-13 80.1 61 68.9
Manes.08G039100 Manihot esculenta HOM05D004717 ORTHO05D005636 2.7e-12 76.6 61 60.7
THA.LOC104800704 Tarenaya hassleriana HOM05D004717 ORTHO05D005636 2.7e-12 76.6 63 68.3
CAN.G274.13 Capsicum annuum HOM05D004717 ORTHO05D005636 6.0e-12 75.5 74 55.4
Sed0025396 Sechium edule HOM05D004717 ORTHO05D005636 1.0e-11 74.7 61 68.9
Haze_11783 Corylus avellana HOM05D004717 ORTHO05D005636 2.3e-11 73.6 70 60.0
Atru.chr11.1095 Acer truncatum HOM05D004717 ORTHO05D005636 3.0e-11 73.2 62 59.7
Peaxi162Scf00681g00024 Petunia axillaris HOM05D004717 ORTHO05D005636 3.9e-11 72.8 63 58.7
Nitab4.5_0004808g0010 Nicotiana tabacum HOM05D004717 ORTHO05D005636 2.5e-10 70.1 61 59.0
Nitab4.5_0004979g0110 Nicotiana tabacum HOM05D004717 ORTHO05D005636 3.3e-10 69.7 61 57.4
Actinidia11311 Actinidia chinensis HOM05D004717 ORTHO05D005636 5.7e-10 68.9 49 71.4
arahy.Tifrunner.gnm1.ann1.TS1LPS Arachis hypogaea HOM05D004717 ORTHO05D005636 7.4e-10 68.6 50 70.0
TWI74G1267 Tripterygium wilfordii HOM05D004717 ORTHO05D005636 9.7e-10 68.2 72 51.4
Sabra07G0063200 Salix brachista HOM05D004717 ORTHO05D005636 2.8e-09 66.6 62 54.8
arahy.Tifrunner.gnm1.ann1.8YZR55 Arachis hypogaea HOM05D004717 ORTHO05D005636 3.7e-09 66.2 70 55.7
Lalb_Chr24g0398391 Lupinus albus HOM05D004717 ORTHO05D005636 8.2e-09 65.1 63 60.3
CsaV3_6G005870 Cucumis sativus L. HOM05D004717 ORTHO05D005636 1.4e-08 64.3 49 73.5
AL6G34580 Arabidopsis lyrata HOM05D004717 ORTHO05D005636 2.4e-08 63.5 61 62.3
Eucgr.G02601 Eucalyptus grandis HOM05D004717 ORTHO05D005636 4.1e-08 62.8 62 53.2
Gohir.A12G132100 Gossypium hirsutum HOM05D004717 ORTHO05D005636 6.9e-08 62.0 35 80.0
MD13G1003500 Malus domestica HOM05D004717 ORTHO05D005636 6.9e-08 62.0 38 73.7
FAN12G1282 Fragaria x ananassa HOM05D004717 ORTHO05D005636 9.0e-08 61.6 81 46.9
Sc08g0003750 Simmondsia chinensis HOM05D004717 ORTHO05D005636 1.5e-07 60.8 67 50.7
Lj3g0022258 Lotus japonicus HOM05D004717 ORTHO05D005636 2.0e-07 60.5 35 80.0
MD16G1003900 Malus domestica HOM05D004717 ORTHO05D005636 2.6e-07 60.1 35 77.1
AT5G23320 Arabidopsis thaliana HOM05D004717 ORTHO05D005636 4.5e-07 59.3 61 59.0
Hma1.2p1_0513F.1_g169470 Hydrangea macrophylla HOM05D004717 ORTHO05D005636 4.5e-07 59.3 39 74.4
RcHm_v2.0_Chr4g0446911 Rosa chinensis HOM05D004717 ORTHO05D005636 4.5e-07 59.3 81 43.2
TAR381G0283 Trochodendron aralioides HOM05D004717 ORTHO05D005636 4.5e-07 59.3 37 73.0
Carub.0006s2109 Capsella rubella HOM05D004717 ORTHO05D005636 5.9e-07 58.9 61 55.7
QL04p036464 Quercus lobata HOM05D004717 ORTHO05D005636 5.9e-07 58.9 35 80.0
Cpa.g.sc59.26 Carica papaya HOM05D004717 ORTHO05D005636 7.7e-07 58.5 52 57.7
Lj5g0015714 Lotus japonicus HOM05D004717 ORTHO05D005636 7.7e-07 58.5 35 77.1
Ciclev10016775m.g Citrus clementina HOM05D004717 ORTHO05D005636 1.0e-06 58.2 36 72.2
MELO3C022525.2 Cucumis melo HOM05D004717 ORTHO05D005636 1.0e-06 58.2 35 80.0
Lj2g0014996 Lotus japonicus HOM05D004717 ORTHO05D005636 1.3e-06 57.8 35 77.1
Prupe.1G348900 Prunus persica HOM05D004717 ORTHO05D005636 1.3e-06 57.8 33 81.8
GSVIVG01038778001 Vitis vinifera HOM05D004717 ORTHO05D005636 1.7e-06 57.4 35 68.6
HanXRQChr08g0237151 Helianthus annuus HOM05D004717 ORTHO05D005636 2.2e-06 57.0 37 70.3
Oeu003437.1 Olea europaea HOM05D004717 ORTHO05D005636 2.2e-06 57.0 35 80.0
Cc11_g03470 Coffea canephora HOM05D004717 ORTHO05D005636 2.9e-06 56.6 35 71.4
Potri.007G074500 Populus trichocarpa HOM05D004717 ORTHO05D005636 2.9e-06 56.6 35 71.4
Sp6g34610 Schrenkiella parvula HOM05D004717 ORTHO05D005636 2.9e-06 56.6 35 77.1
TPR.G28016 Trifolium pratense HOM05D004717 ORTHO05D005636 2.9e-06 56.6 35 77.1
Psat1g123480 Pisum sativum HOM05D004717 ORTHO05D005636 3.8e-06 56.2 35 74.3
PGR142G2311 Punica granatum HOM05D004717 ORTHO05D005636 3.8e-06 56.2 85 43.5
Potri.005G089500 Populus trichocarpa HOM05D004717 ORTHO05D005636 5.0e-06 55.8 35 71.4
Rhsim02G0075200 Rhododendron simsii HOM05D004717 ORTHO05D005636 5.0e-06 55.8 35 74.3
Sed0013821 Sechium edule HOM05D004717 ORTHO05D005636 5.0e-06 55.8 35 74.3
Solyc04g009010.2 Solanum lycopersicum HOM05D004717 ORTHO05D005636 5.0e-06 55.8 35 68.6
PGSC0003DMG400011510 Solanum tuberosum HOM05D004717 ORTHO05D005636 5.0e-06 55.8 35 68.6
SGA_v2.0_scaffold62G21625 Striga asiatica HOM05D004717 ORTHO05D005636 5.0e-06 55.8 35 71.4
CiPaw.05G171500 Carya illinoinensis HOM05D004717 ORTHO05D005636 6.5e-06 55.5 35 77.1
Glyma.16G218800 Glycine max HOM05D004717 ORTHO05D005636 6.5e-06 55.5 35 74.3
Oeu033041.1 Olea europaea HOM05D004717 ORTHO05D005636 8.5e-06 55.1 37 73.0
PGR142G4258 Punica granatum HOM05D004717 ORTHO05D005636 8.5e-06 55.1 34 70.6


User provided reference genes

Program Settings