Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv05777 Davidia involucrata HOM05D000406 ORTHO05D006918 6.7e-52 207.2 117 100.0
Dinv16899 Davidia involucrata HOM05D000406 ORTHO05D006918 9.2e-33 143.7 70 97.1
PGSC0003DMG400011025 Solanum tuberosum HOM05D000406 ORTHO05D006918 1.9e-30 136.0 72 87.5
Sopen10g034700 Solanum pennellii HOM05D000406 ORTHO05D006918 5.6e-30 134.4 70 88.6
Solyc10g085220.3 Solanum lycopersicum HOM05D000954 ORTHO05D006918 7.3e-30 134.0 70 88.6
Actinidia11571 Actinidia chinensis HOM05D000406 ORTHO05D006918 9.5e-30 133.7 70 88.6
TAR623G0521 Trochodendron aralioides HOM05D001399 ORTHO05D001670 9.5e-30 133.7 70 88.6
ATR0681G138 Amborella trichopoda HOM05D000406 ORTHO05D006918 1.2e-29 133.3 70 87.1
QL07p035036 Quercus lobata HOM05D000406 ORTHO05D006918 1.6e-29 132.9 70 88.6
Rhsim05G0217500 Rhododendron simsii HOM05D003030 ORTHO05D003610 1.6e-29 132.9 70 87.1
CAN.G243.19 Capsicum annuum HOM05D000406 ORTHO05D006918 2.8e-29 132.1 70 85.7
Ciclev10012248m.g Citrus clementina HOM05D000406 ORTHO05D006918 3.6e-29 131.7 70 87.1
Nn2g10896 Nelumbo nucifera HOM05D000406 ORTHO05D006918 3.6e-29 131.7 70 87.1
Aqoxy4G02493 Aquilegia oxysepala HOM05D000406 ORTHO05D006918 4.7e-29 131.3 70 85.7
Cfa000488 Carpinus fangiana HOM05D000406 ORTHO05D006918 4.7e-29 131.3 70 88.6
Haze_21027 Corylus avellana HOM05D000406 ORTHO05D006918 4.7e-29 131.3 70 88.6
arahy.Tifrunner.gnm1.ann1.F052KA Arachis hypogaea HOM05D000406 ORTHO05D006918 6.1e-29 131.0 69 87.0
ClCG10G022310 Citrullus lanatus HOM05D000406 ORTHO05D006918 6.1e-29 131.0 69 88.4
MELO3C009147.2 Cucumis melo HOM05D000406 ORTHO05D006918 6.1e-29 131.0 69 88.4
Sed0006450 Sechium edule HOM05D000406 ORTHO05D006918 6.1e-29 131.0 69 88.4
CiPaw.09G211400 Carya illinoinensis HOM05D000406 ORTHO05D006918 8.0e-29 130.6 70 87.1
Manes.08G094100 Manihot esculenta HOM05D000406 ORTHO05D006918 1.0e-28 130.2 70 84.3
Thecc.03G046600 Theobroma cacao HOM05D000406 ORTHO05D006918 1.0e-28 130.2 70 87.1
GSVIVG01003933001 Vitis vinifera HOM05D000406 ORTHO05D006918 1.0e-28 130.2 70 87.1
CsaV3_3G033570 Cucumis sativus L. HOM05D000406 ORTHO05D006918 1.4e-28 129.8 69 87.0
Nitab4.5_0000770g0070 Nicotiana tabacum HOM05D000954 ORTHO05D006918 1.4e-28 129.8 70 84.3
arahy.Tifrunner.gnm1.ann1.1L30AV Arachis hypogaea HOM05D000406 ORTHO05D006918 1.8e-28 129.4 69 85.5
TWI74G0181 Tripterygium wilfordii HOM05D000406 ORTHO05D006918 1.8e-28 129.4 70 85.7
Ah.12g058850 Amaranthus hybridus HOM05D000406 ORTHO05D006918 2.3e-28 129.0 70 85.7
Nitab4.5_0004107g0020 Nicotiana tabacum HOM05D000406 ORTHO05D006918 2.3e-28 129.0 69 85.5
Phvul.011G011300 Phaseolus vulgaris HOM05D000406 ORTHO05D006918 2.3e-28 129.0 70 84.3
SEGI_05711 Sequoiadendron giganteum HOM05D000406 ORTHO05D006918 2.3e-28 129.0 70 84.3
unitig_699.g19378 Utricularia gibba HOM05D000406 ORTHO05D006918 2.3e-28 129.0 69 85.5
Sabra16G0115400 Salix brachista HOM05D000406 ORTHO05D006918 3.0e-28 128.6 70 84.3
PSO339G5837 Papaver somniferum HOM05D000406 ORTHO05D006918 4.0e-28 128.3 70 84.3
PSO384G4971 Papaver somniferum HOM05D000406 ORTHO05D006918 4.0e-28 128.3 70 84.3
MSTRG.18994 Avicennia marina HOM05D000406 ORTHO05D006918 5.2e-28 127.9 69 87.0
ECA238G1930 Erigeron canadensis HOM05D000406 ORTHO05D006918 5.2e-28 127.9 70 82.9
SalBow5G0195 Salvia bowleyana HOM05D000406 ORTHO05D006918 5.2e-28 127.9 70 82.9
SalBow5G2160 Salvia bowleyana HOM05D000406 ORTHO05D006918 5.2e-28 127.9 70 82.9
TWI77G0395 Tripterygium wilfordii HOM05D000406 ORTHO05D006918 5.2e-28 127.9 70 84.3
DCAR_028863 Daucus carota HOM05D000406 ORTHO05D006918 6.8e-28 127.5 69 85.5
Glyma.14G179300 Glycine max HOM05D000406 ORTHO05D006918 6.8e-28 127.5 70 84.3
Peaxi162Scf00009g01535 Petunia axillaris HOM05D000406 ORTHO05D006918 6.8e-28 127.5 69 84.1
CSS0022761 Camellia sinensis var. sinensis HOM05D000406 ORTHO05D006918 8.9e-28 127.1 70 84.3
Glyma.02G211700 Glycine max HOM05D000406 ORTHO05D006918 8.9e-28 127.1 70 84.3
Hund14880 Selenicereus undatus HOM05D000406 ORTHO05D006918 8.9e-28 127.1 70 82.9
Cc11_g00480 Coffea canephora HOM05D000406 ORTHO05D006918 1.2e-27 126.7 70 82.9
Migut.J00136 Erythranthe guttata HOM05D000406 ORTHO05D006918 1.2e-27 126.7 69 85.5
Eucgr.A00536 Eucalyptus grandis HOM05D000406 ORTHO05D006918 1.2e-27 126.7 70 84.3
MBI15_g07345_MAGBIO Magnolia biondii HOM05D000406 ORTHO05D006918 1.2e-27 126.7 70 82.9
PGR031G2785 Punica granatum HOM05D000406 ORTHO05D006918 1.2e-27 126.7 70 82.9
Gohir.A10G196500 Gossypium hirsutum HOM05D000406 ORTHO05D006918 1.5e-27 126.3 70 84.3
Gorai.011G228400 Gossypium raimondii HOM05D000406 ORTHO05D006918 1.5e-27 126.3 70 84.3
HanXRQChr16g0521221 Helianthus annuus HOM05D000406 ORTHO05D006918 1.5e-27 126.3 70 80.0
Prupe.6G280400 Prunus persica HOM05D000406 ORTHO05D006918 2.6e-27 125.6 70 81.4
vmacro20297 Vaccinium macrocarpon HOM05D000406 ORTHO05D006918 2.6e-27 125.6 70 84.3
VMungo0647G1306 Vigna mungo HOM05D000406 ORTHO05D006918 2.6e-27 125.6 70 81.4
EL10Ac5g12535 Beta vulgaris HOM05D000406 ORTHO05D006918 3.4e-27 125.2 95 66.3
Gohir.D10G203600 Gossypium hirsutum HOM05D000406 ORTHO05D006918 3.4e-27 125.2 70 82.9
Lj2A71T59 Lonicera japonica HOM05D000406 ORTHO05D006918 3.4e-27 125.2 70 82.9
Lalb_Chr04g0251411 Lupinus albus HOM05D000406 ORTHO05D006918 3.4e-27 125.2 70 82.9
Gohir.A09G174600 Gossypium hirsutum HOM05D000406 ORTHO05D006918 4.4e-27 124.8 70 81.4
Medtr4g057850 Medicago truncatula HOM05D000406 ORTHO05D006918 4.4e-27 124.8 70 80.0
Potri.016G119500 Populus trichocarpa HOM05D000406 ORTHO05D006918 4.4e-27 124.8 70 82.9
MSTRG.5564 Avicennia marina HOM05D000406 ORTHO05D006918 5.8e-27 124.4 69 84.1
Os03g0292200 Oryza sativa ssp. japonica HOM05D000406 ORTHO05D006918 5.8e-27 124.4 70 80.0
Phvul.008G178900 Phaseolus vulgaris HOM05D000406 ORTHO05D006918 5.8e-27 124.4 70 81.4
SMO356G0213 Selaginella moellendorffii HOM05D000406 ORTHO05D006918 5.8e-27 124.4 70 81.4
RcHm_v2.0_Chr3g0462571 Rosa chinensis HOM05D000406 ORTHO05D006918 7.5e-27 124.0 70 84.3
Sed0017323 Sechium edule HOM05D000406 ORTHO05D006918 7.5e-27 124.0 69 84.1
TPR.G11802 Trifolium pratense HOM05D000406 ORTHO05D006918 7.5e-27 124.0 70 80.0
Zm00001eb013460 Zea mays HOM05D000406 ORTHO05D006918 7.5e-27 124.0 70 78.6
Duzib084G1089 Durio zibethinus HOM05D000406 ORTHO05D006918 9.8e-27 123.6 70 80.0
MD00G1062100 Malus domestica HOM05D000406 ORTHO05D006918 9.8e-27 123.6 70 81.4
FAN05G0431 Fragaria x ananassa HOM05D000406 ORTHO05D006918 1.3e-26 123.2 70 82.9
FAN14G2346 Fragaria x ananassa HOM05D000406 ORTHO05D006918 1.7e-26 122.9 70 82.9
Psat0s2362g0040 Pisum sativum HOM05D000406 ORTHO05D006918 1.7e-26 122.9 70 78.6
THA.LOC104827047 Tarenaya hassleriana HOM05D000406 ORTHO05D006918 1.7e-26 122.9 69 81.2
Aa31LG1G23000 Aethionema arabicum HOM05D000406 ORTHO05D006918 2.2e-26 122.5 69 78.3
CANSAT35G1945 Cannabis sativa HOM05D000406 ORTHO05D006918 2.2e-26 122.5 70 80.0
FAN09G3983 Fragaria x ananassa HOM05D000406 ORTHO05D006918 2.2e-26 122.5 69 84.1
FAN14G5957 Fragaria x ananassa HOM05D000406 ORTHO05D006918 2.2e-26 122.5 70 82.9
FvH4_6g11130 Fragaria vesca HOM05D000406 ORTHO05D006918 2.9e-26 122.1 70 81.4
Sp6g40650 Schrenkiella parvula HOM05D000406 ORTHO05D006918 2.9e-26 122.1 69 78.3
CDE12G0752 Ceratophyllum demersum HOM05D000406 ORTHO05D006918 4.9e-26 121.3 70 78.6
Gohir.D09G171650 Gossypium hirsutum HOM05D000406 ORTHO05D006918 6.4e-26 120.9 70 80.0
A03p00350 Brassica napus HOM05D000406 ORTHO05D006918 8.3e-26 120.6 69 76.8
BraA03t09426Z Brassica rapa HOM05D000406 ORTHO05D006918 8.3e-26 120.6 69 76.8
CDE06G0909 Ceratophyllum demersum HOM05D000406 ORTHO05D006918 8.3e-26 120.6 70 78.6
AL6G10800 Arabidopsis lyrata HOM05D000406 ORTHO05D006918 1.1e-25 120.2 69 76.8
AT5G01340 Arabidopsis thaliana HOM05D000406 ORTHO05D006918 1.1e-25 120.2 69 76.8
CARHR211700 Cardamine hirsuta HOM05D000406 ORTHO05D006918 1.1e-25 120.2 69 76.8
Thhalv10014166m.g Eutrema salsugineum HOM05D000406 ORTHO05D006918 1.1e-25 120.2 69 76.8
HanXRQChr09g0253721 Helianthus annuus HOM05D000406 ORTHO05D006918 1.1e-25 120.2 70 74.3
C03p00510 Brassica napus HOM05D000406 ORTHO05D006918 1.4e-25 119.8 69 76.8
BolC3t12617H Brassica oleracea HOM05D000406 ORTHO05D006918 1.4e-25 119.8 69 76.8
Ca_05376_v3 Cicer arietinum L. HOM05D000406 ORTHO05D006918 1.4e-25 119.8 70 77.1
Mapoly0001s0082 Marchantia polymorpha HOM05D000406 ORTHO05D006918 1.4e-25 119.8 70 78.6
THA.LOC104823292 Tarenaya hassleriana HOM05D000406 ORTHO05D006918 1.4e-25 119.8 69 79.7
Lj1g0007203 Lotus japonicus HOM05D000406 ORTHO05D006918 1.9e-25 119.4 70 75.7
MD12G1172100 Malus domestica HOM05D000406 ORTHO05D006918 2.4e-25 119.0 70 78.6
Carub.0006s0048 Capsella rubella HOM05D000406 ORTHO05D006918 4.1e-25 118.2 69 75.4
AUR62030821 Chenopodium quinoa HOM05D000406 ORTHO05D006918 4.1e-25 118.2 69 78.3
SHI12849 Sapria himalayana HOM05D000406 ORTHO05D006918 4.1e-25 118.2 69 79.7
HanXRQChr08g0214861 Helianthus annuus HOM05D000406 ORTHO05D006918 5.4e-25 117.9 69 76.8
HPP92_012032 Vanilla planifolia HOM05D000406 ORTHO05D006918 5.4e-25 117.9 64 81.2
Atru.chr1.3799 Acer truncatum HOM05D001027 ORTHO05D006918 7.0e-25 117.5 73 79.5
AUR62030475 Chenopodium quinoa HOM05D000406 ORTHO05D006918 9.2e-25 117.1 69 76.8
Eucgr.A00542 Eucalyptus grandis HOM05D000406 ORTHO05D006918 4.6e-24 114.8 70 77.1
Pp3c11_24700 Physcomitrium patens HOM05D000406 ORTHO05D006918 3.0e-23 112.1 70 71.4
Atru.BG.221.p Acer truncatum HOM05D000406 ORTHO05D006918 2.5e-22 109.0 70 72.9
BcaB01g06224 Brassica carinata HOM05D000406 ORTHO05D006918 5.6e-22 107.8 66 74.2
Pp3c3_25290 Physcomitrium patens HOM05D000406 ORTHO05D006918 1.2e-21 106.7 70 68.6
Cre06.g260200 Chlamydomonas reinhardtii HOM05D000406 ORTHO05D006918 4.4e-19 98.2 69 59.4
PRCOL_00000280 Prasinoderma coloniale HOM05D000406 ORTHO05D006918 2.9e-18 95.5 81 59.3
Rhsim04G0104200 Rhododendron simsii HOM05D000406 ORTHO05D006918 3.2e-17 92.0 57 70.2
CBR_g49636 Chara braunii HOM05D000406 ORTHO05D006918 1.7e-15 86.3 81 51.9
Aqoxy4G02494 Aquilegia oxysepala HOM05D000406 ORTHO05D006918 4.7e-13 78.2 42 83.3
Prupe.2G034900 Prunus persica HOM05D000406 ORTHO05D006918 4.7e-13 78.2 42 81.0
Sc22g0002560 Simmondsia chinensis HOM05D000406 ORTHO05D006918 1.1e-12 77.0 42 85.7
SMO002G0006 Selaginella moellendorffii HOM05D000406 ORTHO05D006918 3.1e-12 75.5 38 86.8
Gorai.006G193400 Gossypium raimondii HOM05D000406 ORTHO05D006918 6.8e-12 74.3 40 82.5
CBR_g12201 Chara braunii HOM05D000406 ORTHO05D002714 9.5e-06 53.9 75 37.3


User provided reference genes

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