Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv05728 Davidia involucrata HOM05D009218 ORTHO05D010069 1.5e-121 439.5 221 100.0
Rhsim05G0175900 Rhododendron simsii HOM05D009218 ORTHO05D010069 8.9e-21 104.8 126 52.4
Manes.08G137100 Manihot esculenta HOM05D011447 ORTHO05D010069 7.8e-17 91.7 117 47.9
TAR633G0725 Trochodendron aralioides HOM05D001496 ORTHO05D007453 3.0e-16 89.7 127 43.3
COL.COLO4_15410 Corchorus olitorius HOM05D009218 ORTHO05D010069 7.3e-15 85.1 131 44.3
Potri.013G043800 Populus trichocarpa HOM05D011447 ORTHO05D010069 1.8e-13 80.5 114 43.9
Cpa.g.sc162.8 Carica papaya HOM05D009218 ORTHO05D010069 2.3e-13 80.1 120 44.2
QL03p029061 Quercus lobata HOM05D009218 ORTHO05D010069 5.2e-13 79.0 119 43.7
QL03p028359 Quercus lobata HOM05D009218 ORTHO05D010069 1.2e-12 77.8 119 42.9
Potri.016G093900 Populus trichocarpa HOM05D011447 ORTHO05D010069 1.5e-12 77.4 113 45.1
Sabra13G0040600 Salix brachista HOM05D011447 ORTHO05D010069 4.4e-12 75.9 117 45.3
Manes.09G150100 Manihot esculenta HOM05D011447 ORTHO05D010069 1.3e-11 74.3 119 37.8
Manes.08G137000 Manihot esculenta HOM05D011447 ORTHO05D010069 1.7e-11 73.9 122 41.8
Nn3g19575 Nelumbo nucifera HOM05D011447 ORTHO05D010069 1.7e-11 73.9 110 46.4
QL03p028391 Quercus lobata HOM05D011447 ORTHO05D010069 1.7e-11 73.9 116 41.4
QL03p029028 Quercus lobata HOM05D011447 ORTHO05D010069 1.7e-11 73.9 116 41.4
Potri.019G013300 Populus trichocarpa HOM05D011447 ORTHO05D010069 2.9e-11 73.2 114 42.1
Potri.019G013750 Populus trichocarpa HOM05D011447 ORTHO05D010069 6.4e-11 72.0 114 40.4
FAN09G2898 Fragaria x ananassa HOM05D009218 ORTHO05D010069 3.2e-10 69.7 137 36.5
FAN14G1769 Fragaria x ananassa HOM05D009218 ORTHO05D010069 5.4e-10 68.9 134 37.3
FAN02G3090 Fragaria x ananassa HOM05D009218 ORTHO05D010069 9.2e-10 68.2 134 38.1
RcHm_v2.0_Chr3g0450331 Rosa chinensis HOM05D009218 ORTHO05D010069 9.2e-10 68.2 124 37.9
FvH4_6g02470 Fragaria vesca HOM05D009218 ORTHO05D010069 1.2e-09 67.8 134 37.3
FAN14G5335 Fragaria x ananassa HOM05D009218 ORTHO05D010069 1.2e-09 67.8 134 37.3
Gorai.013G186400 Gossypium raimondii HOM05D009218 ORTHO05D010069 1.6e-09 67.4 121 43.0
Nn7g36749 Nelumbo nucifera HOM05D002974 ORTHO05D002992 1.6e-09 67.4 163 36.2
Prupe.6G347000 Prunus persica HOM05D009218 ORTHO05D010069 2.1e-09 67.0 137 39.4
SHI31328 Sapria himalayana HOM05D011447 ORTHO05D010069 2.7e-09 66.6 110 40.9
Gohir.A13G168950 Gossypium hirsutum HOM05D009218 ORTHO05D010069 3.5e-09 66.2 121 42.1
Eucgr.H04261 Eucalyptus grandis HOM05D009218 ORTHO05D010069 4.6e-09 65.9 123 41.5
Ciclev10022688m.g Citrus clementina HOM05D009218 ORTHO05D010069 1.0e-08 64.7 134 38.1
FAN05G0115 Fragaria x ananassa HOM05D009218 ORTHO05D010069 1.0e-08 64.7 134 36.6
FAN05G4900 Fragaria x ananassa HOM05D009218 ORTHO05D010069 1.0e-08 64.7 134 36.6
PGR004G0279 Punica granatum HOM05D011447 ORTHO05D010069 3.9e-08 62.8 142 38.0
ClCG02G016900 Citrullus lanatus HOM05D009218 ORTHO05D010069 8.6e-08 61.6 115 42.6
Dinv32015 Davidia involucrata HOM05D002974 ORTHO05D002992 8.6e-08 61.6 76 48.7
Psat5g220360 Pisum sativum HOM05D002974 ORTHO05D002992 8.6e-08 61.6 129 35.7
Nn2g14777 Nelumbo nucifera HOM05D002974 ORTHO05D002992 1.5e-07 60.8 118 39.0
CiPaw.10G040200 Carya illinoinensis HOM05D002974 ORTHO05D002992 1.9e-07 60.5 122 35.2
Sc20g0000500 Simmondsia chinensis HOM05D009218 ORTHO05D010069 1.9e-07 60.5 69 50.7
Potri.001G029700 Populus trichocarpa HOM05D002974 ORTHO05D002992 3.3e-07 59.7 115 41.7
CSS0033077 Camellia sinensis var. sinensis HOM05D002974 ORTHO05D002992 5.6e-07 58.9 123 37.4
Nitab4.5_0008548g0020 Nicotiana tabacum HOM05D011340 ORTHO05D010069 5.6e-07 58.9 109 40.4
Sed0020224 Sechium edule HOM05D009218 ORTHO05D010069 5.6e-07 58.9 116 41.4
PGSC0003DMG400001001 Solanum tuberosum HOM05D011340 ORTHO05D010069 7.3e-07 58.5 106 37.7
Thecc.05G277300 Theobroma cacao HOM05D009218 ORTHO05D010069 7.3e-07 58.5 69 50.7
CSS0001226 Camellia sinensis var. sinensis HOM05D002974 ORTHO05D002992 9.6e-07 58.2 120 34.2
MELO3C004408.2 Cucumis melo HOM05D009218 ORTHO05D010069 9.6e-07 58.2 132 39.4
Sabra03G0145400 Salix brachista HOM05D002974 ORTHO05D002992 9.6e-07 58.2 54 59.3
Atru.chr2.882 Acer truncatum HOM05D009218 ORTHO05D010069 1.2e-06 57.8 55 61.8
ClCG02G016910 Citrullus lanatus HOM05D009218 ORTHO05D010069 1.2e-06 57.8 52 59.6
TAR623G1017 Trochodendron aralioides HOM05D002974 ORTHO05D002992 1.2e-06 57.8 72 55.6
CsaV3_2G003860 Cucumis sativus L. HOM05D009218 ORTHO05D010069 1.6e-06 57.4 41 70.7
Nitab4.5_0000687g0100 Nicotiana tabacum HOM05D011340 ORTHO05D010069 1.6e-06 57.4 109 38.5
CSS0032574 Camellia sinensis var. sinensis HOM05D002974 ORTHO05D002992 2.1e-06 57.0 120 34.2
Potri.003G194700 Populus trichocarpa HOM05D002974 ORTHO05D002992 2.1e-06 57.0 120 40.0
PGSC0003DMG400023543 Solanum tuberosum HOM05D011340 ORTHO05D010069 2.1e-06 57.0 111 36.0
Cfa010941 Carpinus fangiana HOM05D002974 ORTHO05D002992 2.8e-06 56.6 59 57.6
Sed0021944 Sechium edule HOM05D009218 ORTHO05D010069 2.8e-06 56.6 37 78.4
Cc06_g19310 Coffea canephora HOM05D002974 ORTHO05D002992 3.6e-06 56.2 67 53.7
Dinv44699 Davidia involucrata HOM05D002974 ORTHO05D002992 3.6e-06 56.2 75 46.7
Sabra19G0016800 Salix brachista HOM05D001365 ORTHO05D010069 4.7e-06 55.8 89 42.7
Aqoxy2G00396 Aquilegia oxysepala HOM05D002974 ORTHO05D002992 6.2e-06 55.5 78 47.4
CiPaw.07G070200 Carya illinoinensis HOM05D009218 ORTHO05D010069 6.2e-06 55.5 62 54.8
MELO3C004409.2 Cucumis melo HOM05D009218 ORTHO05D010069 6.2e-06 55.5 42 66.7
CsaV3_2G003870 Cucumis sativus L. HOM05D009218 ORTHO05D010069 6.2e-06 55.5 131 40.5
Gohir.D13G174325 Gossypium hirsutum HOM05D009218 ORTHO05D010069 8.1e-06 55.1 49 67.3


User provided reference genes

Program Settings