Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv05659 Davidia involucrata HOM05D003739 ORTHO05D003996 6.6e-82 307.4 160 100.0
CSS0038123 Camellia sinensis var. sinensis HOM05D003739 ORTHO05D003996 3.1e-55 218.8 164 75.0
MSTRG.9105 Avicennia marina HOM05D003739 ORTHO05D003996 3.7e-53 211.8 158 69.0
Actinidia35828 Actinidia chinensis HOM05D003739 ORTHO05D003996 1.9e-52 209.5 147 78.2
Oeu005537.3 Olea europaea HOM05D003739 ORTHO05D003996 7.1e-52 207.6 161 70.2
Cc09_g05210 Coffea canephora HOM05D003739 ORTHO05D003996 3.9e-50 201.8 163 70.6
GSVIVG01023816001 Vitis vinifera HOM05D003739 ORTHO05D003996 2.8e-48 195.7 168 66.7
Nitab4.5_0004903g0060 Nicotiana tabacum HOM05D003739 ORTHO05D003996 2.6e-46 189.1 159 64.2
Peaxi162Scf00048g01417 Petunia axillaris HOM05D003739 ORTHO05D003996 2.6e-46 189.1 158 63.3
TAR628G0054 Trochodendron aralioides HOM05D003739 ORTHO05D003996 5.8e-46 188.0 165 65.5
Sopen02g026250 Solanum pennellii HOM05D003739 ORTHO05D003996 2.9e-45 185.7 158 62.0
Nitab4.5_0006794g0060 Nicotiana tabacum HOM05D003739 ORTHO05D003996 2.4e-44 182.6 159 61.6
TWI79G1707 Tripterygium wilfordii HOM05D003739 ORTHO05D003996 7.1e-44 181.0 160 60.6
SGA_v2.0_scaffold62G21539 Striga asiatica HOM05D003739 ORTHO05D003996 1.2e-43 180.3 159 61.0
Nn4g24182 Nelumbo nucifera HOM05D003739 ORTHO05D003996 4.6e-43 178.3 159 64.8
Cfa005045 Carpinus fangiana HOM05D003739 ORTHO05D003996 7.8e-43 177.6 165 59.4
Ciclev10027900m.g Citrus clementina HOM05D003739 ORTHO05D003996 1.7e-42 176.4 161 59.6
vmacro15435 Vaccinium macrocarpon HOM05D003739 ORTHO05D003996 2.3e-42 176.0 194 56.2
Manes.11G084700 Manihot esculenta HOM05D003739 ORTHO05D003996 3.0e-42 175.6 160 60.0
CiPaw.06G133400 Carya illinoinensis HOM05D003739 ORTHO05D003996 3.9e-42 175.3 163 63.2
TAR376G0790 Trochodendron aralioides HOM05D003739 ORTHO05D003996 2.5e-41 172.6 162 61.1
CAN.G809.70 Capsicum annuum HOM05D003739 ORTHO05D003996 1.1e-39 167.2 170 55.3
PGSC0003DMG402017733 Solanum tuberosum HOM05D003739 ORTHO05D003996 2.4e-39 166.0 158 57.0
Migut.F00900 Erythranthe guttata HOM05D003739 ORTHO05D003996 5.3e-39 164.9 181 54.1
Nitab4.5_0010401g0020 Nicotiana tabacum HOM05D003739 ORTHO05D003996 6.9e-39 164.5 112 74.1
Atru.chr12.1298 Acer truncatum HOM05D003739 ORTHO05D003996 9.0e-39 164.1 161 57.1
Atru.chr5.3065 Acer truncatum HOM05D003739 ORTHO05D003996 9.0e-39 164.1 161 57.1
arahy.Tifrunner.gnm1.ann1.H3NIN5 Arachis hypogaea HOM05D003739 ORTHO05D003996 1.5e-38 163.3 166 55.4
Sed0001527 Sechium edule HOM05D003739 ORTHO05D003996 1.5e-38 163.3 165 59.4
CANSAT54G2857 Cannabis sativa HOM05D003739 ORTHO05D003996 3.4e-38 162.2 156 56.4
Haze_18940 Corylus avellana HOM05D004345 ORTHO05D005192 2.2e-37 159.5 154 58.4
Psat7g051640 Pisum sativum HOM05D003739 ORTHO05D003996 2.9e-37 159.1 160 56.9
Hma1.2p1_1073F.1_g254250 Hydrangea macrophylla HOM05D003739 ORTHO05D003996 3.8e-37 158.7 103 76.7
QL11p044151 Quercus lobata HOM05D003739 ORTHO05D003996 8.4e-37 157.5 153 61.4
ECA234G4722 Erigeron canadensis HOM05D003739 ORTHO05D003996 1.4e-36 156.8 158 55.7
CiPaw.10G121500 Carya illinoinensis HOM05D003739 ORTHO05D003996 4.2e-36 155.2 157 58.6
Potri.010G019600 Populus trichocarpa HOM05D003739 ORTHO05D003996 7.1e-36 154.5 158 55.7
PSO339G5323 Papaver somniferum HOM05D003739 ORTHO05D003996 9.3e-36 154.1 175 53.1
CANSAT11G0250 Cannabis sativa HOM05D003739 ORTHO05D003996 1.3e-34 150.2 156 53.2
LjContig00222g0016564 Lotus japonicus HOM05D003739 ORTHO05D003996 2.3e-34 149.4 169 52.7
ClCG01G008230 Citrullus lanatus HOM05D003739 ORTHO05D003996 3.9e-34 148.7 168 54.2
Thecc.08G060300 Theobroma cacao HOM05D003739 ORTHO05D003996 2.5e-33 146.0 164 51.8
Lalb_Chr11g0068001 Lupinus albus HOM05D003739 ORTHO05D003996 3.3e-33 145.6 175 50.9
CsaV3_5G020720 Cucumis sativus L. HOM05D003739 ORTHO05D003996 2.8e-32 142.5 168 51.2
Glyma.01G228200 Glycine max HOM05D003739 ORTHO05D003996 4.8e-32 141.7 160 53.1
arahy.Tifrunner.gnm1.ann1.TF9NF6 Arachis hypogaea HOM05D003739 ORTHO05D003996 1.4e-31 140.2 166 51.2
PSO675G5166 Papaver somniferum HOM05D003739 ORTHO05D003996 2.4e-31 139.4 177 50.8
Phvul.002G039700 Phaseolus vulgaris HOM05D003739 ORTHO05D003996 2.4e-31 139.4 161 49.1
TPR.G2246 Trifolium pratense HOM05D003739 ORTHO05D003996 5.3e-31 138.3 165 52.1
Sabra10G0016300 Salix brachista HOM05D003739 ORTHO05D003996 6.9e-31 137.9 139 56.1
VMungo1215G1752 Vigna mungo HOM05D003739 ORTHO05D003996 6.9e-31 137.9 162 50.6
Glyma.11G010900 Glycine max HOM05D003739 ORTHO05D003996 2.6e-30 136.0 159 50.3
Psat7g051160 Pisum sativum HOM05D003739 ORTHO05D003996 4.5e-30 135.2 159 51.6
AUR62005990 Chenopodium quinoa HOM05D003739 ORTHO05D003996 5.8e-30 134.8 158 51.3
Gohir.D09G091100 Gossypium hirsutum HOM05D003739 ORTHO05D003996 1.3e-29 133.7 164 50.6
AUR62028080 Chenopodium quinoa HOM05D003739 ORTHO05D003996 1.7e-29 133.3 161 51.6
unitig_46.g18632 Utricularia gibba HOM05D003739 ORTHO05D003996 2.9e-29 132.5 95 65.3
Sed0009728 Sechium edule HOM05D003739 ORTHO05D003996 1.4e-28 130.2 162 46.3
Duzib187G1144 Durio zibethinus HOM05D003739 ORTHO05D003996 2.4e-28 129.4 160 50.0
Medtr4g067250 Medicago truncatula HOM05D003739 ORTHO05D003996 2.4e-28 129.4 156 44.2
TPR.G2191 Trifolium pratense HOM05D003739 ORTHO05D003996 2.4e-28 129.4 169 49.1
Lsat_1_v5_gn_5_112881 Lactuca sativa HOM05D003739 ORTHO05D003996 5.4e-28 128.3 155 47.7
Gorai.006G107300 Gossypium raimondii HOM05D003739 ORTHO05D003996 7.1e-28 127.9 164 48.8
CDE06G1699 Ceratophyllum demersum HOM05D003739 ORTHO05D003996 9.3e-28 127.5 156 49.4
Medtr8g091830 Medicago truncatula HOM05D003739 ORTHO05D003996 1.6e-27 126.7 150 50.0
PSO541G6540 Papaver somniferum HOM05D003739 ORTHO05D003996 2.1e-27 126.3 177 47.5
PGR042G2822 Punica granatum HOM05D003739 ORTHO05D003996 2.7e-27 125.9 164 49.4
MD10G1070200 Malus domestica HOM05D003739 ORTHO05D003996 1.0e-26 124.0 165 46.1
COL.COLO4_32233 Corchorus olitorius HOM05D003739 ORTHO05D003996 2.3e-26 122.9 199 42.7
SalBow6G4317 Salvia bowleyana HOM05D003739 ORTHO05D003996 3.0e-26 122.5 87 69.0
Aqoxy2G03991 Aquilegia oxysepala HOM05D003739 ORTHO05D003996 5.1e-26 121.7 166 46.4
Cpa.g.sc14.123 Carica papaya HOM05D003739 ORTHO05D003996 2.5e-25 119.4 146 51.4
Prupe.8G091800 Prunus persica HOM05D003739 ORTHO05D003996 4.3e-25 118.6 158 44.9
AL7G11100 Arabidopsis lyrata HOM05D003739 ORTHO05D003996 5.6e-25 118.2 167 44.3
Eucgr.A01623 Eucalyptus grandis HOM05D003739 ORTHO05D003996 9.6e-25 117.5 165 48.5
BcaNung03888 Brassica carinata HOM05D003739 ORTHO05D003996 1.3e-24 117.1 163 43.6
PSO063G1830 Papaver somniferum HOM05D003739 ORTHO05D003996 1.6e-24 116.7 82 68.3
BcaNung02353 Brassica carinata HOM05D003739 ORTHO05D003996 1.1e-23 114.0 163 42.3
C07p63340 Brassica napus HOM05D003739 ORTHO05D003996 1.1e-23 114.0 163 42.3
BolC7t46745H Brassica oleracea HOM05D003739 ORTHO05D003996 1.1e-23 114.0 163 42.9
RcHm_v2.0_Chr5g0054461 Rosa chinensis HOM05D003739 ORTHO05D003996 1.8e-23 113.2 156 45.5
Actinidia05492 Actinidia chinensis HOM05D003739 ORTHO05D003996 2.4e-23 112.8 93 71.0
Aa31LG6G16100 Aethionema arabicum HOM05D003739 ORTHO05D003996 3.1e-23 112.5 169 43.2
AT4G39160 Arabidopsis thaliana HOM05D003739 ORTHO05D003996 1.2e-22 110.5 165 42.4
RcHm_v2.0_Chr6g0265811 Rosa chinensis HOM05D003739 ORTHO05D003996 1.2e-22 110.5 159 45.3
THA.LOC104800691 Tarenaya hassleriana HOM05D003739 ORTHO05D003996 1.2e-22 110.5 162 43.8
ATR0564G411 Amborella trichopoda HOM05D003739 ORTHO05D003996 2.0e-22 109.8 104 49.0
EL10Ac3g05170 Beta vulgaris HOM05D003739 ORTHO05D003996 2.0e-22 109.8 143 49.0
Hund09717 Selenicereus undatus HOM05D003739 ORTHO05D003996 2.0e-22 109.8 163 42.3
BcaB03g12246 Brassica carinata HOM05D003739 ORTHO05D003996 3.4e-22 109.0 173 41.6
Lj6g0022884 Lotus japonicus HOM05D003739 ORTHO05D003996 3.4e-22 109.0 64 78.1
A06p48670 Brassica napus HOM05D003739 ORTHO05D003996 7.6e-22 107.8 166 43.4
BraA06t27734Z Brassica rapa HOM05D003739 ORTHO05D003996 7.6e-22 107.8 166 43.4
SEGI_13436 Sequoiadendron giganteum HOM05D003739 ORTHO05D003996 7.6e-22 107.8 93 55.9
A08p23790 Brassica napus HOM05D003739 ORTHO05D003996 9.9e-22 107.5 175 38.9
DCAR_004344 Daucus carota HOM05D003739 ORTHO05D003996 9.9e-22 107.5 160 41.9
MBI16_g35489_MAGBIO Magnolia biondii HOM05D033968 ORTHO05D003996 1.3e-21 107.1 159 44.0
HanXRQChr10g0289001 Helianthus annuus HOM05D003739 ORTHO05D003996 2.2e-21 106.3 161 41.0
Ca_17694_v3 Cicer arietinum L. HOM05D003739 ORTHO05D003996 8.4e-21 104.4 137 49.6
Sp3g07810 Schrenkiella parvula HOM05D003739 ORTHO05D000043 8.4e-21 104.4 172 40.1
FAN27G2905 Fragaria x ananassa HOM05D003739 ORTHO05D003996 1.1e-20 104.0 159 42.8
Aa31LG7G15010 Aethionema arabicum HOM05D003739 ORTHO05D003996 1.4e-20 103.6 86 54.7
FvH4_2g09520 Fragaria vesca HOM05D003739 ORTHO05D003996 1.4e-20 103.6 159 42.1
FAN24G2517 Fragaria x ananassa HOM05D003739 ORTHO05D003996 1.9e-20 103.2 147 43.5
C03p77640 Brassica napus HOM05D003739 ORTHO05D003996 4.2e-20 102.1 172 37.2
BolC3t20021H Brassica oleracea HOM05D003739 ORTHO05D003996 4.2e-20 102.1 172 37.2
BcaC01g00285 Brassica carinata HOM05D000394 ORTHO05D000299 5.5e-20 101.7 170 37.1
FvH4_2g03400 Fragaria vesca HOM05D003739 ORTHO05D003996 7.1e-20 101.3 163 42.9
Hund09716 Selenicereus undatus HOM05D003739 ORTHO05D003996 9.3e-20 100.9 156 41.7
FAN15G1163 Fragaria x ananassa HOM05D003739 ORTHO05D003996 1.2e-19 100.5 147 43.5
BraA08t34331Z Brassica rapa HOM05D003739 ORTHO05D003996 1.6e-19 100.1 172 37.2
CARHR247590 Cardamine hirsuta HOM05D003739 ORTHO05D003996 4.6e-19 98.6 171 38.0
FAN15G1290 Fragaria x ananassa HOM05D003739 ORTHO05D003996 7.9e-19 97.8 157 40.8
CARHR106820 Cardamine hirsuta HOM05D003739 ORTHO05D003996 2.3e-18 96.3 158 38.6
Thhalv10024751m.g Eutrema salsugineum HOM05D003739 ORTHO05D003996 5.1e-18 95.1 67 62.7
HPP92_028201 Vanilla planifolia HOM05D003739 ORTHO05D003996 5.1e-18 95.1 122 42.6
C09p07090 Brassica napus HOM05D003739 ORTHO05D003996 6.7e-18 94.7 162 37.0
Carub.0007s0104 Capsella rubella HOM05D003739 ORTHO05D003996 6.7e-18 94.7 83 51.8
FAN24G0708 Fragaria x ananassa HOM05D003739 ORTHO05D003996 6.7e-18 94.7 162 41.4
Zm00001eb249730 Zea mays HOM05D025681 ORTHO05D003996 1.9e-17 93.2 125 40.8
CARHR112440 Cardamine hirsuta HOM05D003739 ORTHO05D003996 4.3e-17 92.0 58 70.7
BolC9t53626H Brassica oleracea HOM05D003739 ORTHO05D003996 5.6e-17 91.7 166 36.7
Zm00001eb261130 Zea mays HOM05D025681 ORTHO05D003996 1.6e-16 90.1 162 34.6
Glyma.10G205233 Glycine max HOM05D003739 ORTHO05D003996 3.7e-16 89.0 157 38.2
A09p06800 Brassica napus HOM05D003739 ORTHO05D003996 8.2e-16 87.8 171 37.4
BcaC04g23559 Brassica carinata HOM05D003739 ORTHO05D003996 1.4e-15 87.0 165 33.9
Pp3c18_8710 Physcomitrium patens HOM05D003739 ORTHO05D003996 1.4e-15 87.0 121 43.0
Mapoly0023s0090 Marchantia polymorpha HOM05D003739 ORTHO05D003996 2.4e-15 86.3 126 38.1
BraA09t36326Z Brassica rapa HOM05D003739 ORTHO05D003996 4.0e-15 85.5 167 36.5
FvH4_2g09510 Fragaria vesca HOM05D003739 ORTHO05D003996 6.9e-15 84.7 126 42.1
Lj8C306T17 Lonicera japonica HOM05D003739 ORTHO05D003996 9.0e-15 84.3 47 89.4
Medtr8g091850 Medicago truncatula HOM05D003739 ORTHO05D003996 9.0e-15 84.3 66 69.7
Gohir.A09G091100 Gossypium hirsutum HOM05D003739 ORTHO05D003996 1.2e-14 84.0 150 40.0
Pp3c21_11880 Physcomitrium patens HOM05D003739 ORTHO05D003996 5.8e-14 81.6 133 39.1
AagrBONN_evm.TU.Sc2ySwM_340.755 Anthoceros agrestis HOM05D003739 ORTHO05D003996 1.0e-13 80.9 133 38.3
AagrBONN_evm.TU.Sc2ySwM_344.3723 Anthoceros agrestis HOM05D003739 ORTHO05D003996 1.0e-13 80.9 133 38.3
Glyma.16G093750 Glycine max HOM05D003739 ORTHO05D003996 1.1e-12 77.4 92 50.0
Glyma.20G185167 Glycine max HOM05D003739 ORTHO05D003996 2.5e-12 76.3 111 41.4
Dinv07186 Davidia involucrata HOM05D000053 ORTHO05D045112 5.5e-12 75.1 73 46.6
Dinv13445 Davidia involucrata HOM05D003739 ORTHO05D003996 7.1e-12 74.7 68 48.5
CBR_g31667 Chara braunii HOM05D003739 ORTHO05D003996 9.3e-12 74.3 93 41.9
FvH4_2g03360 Fragaria vesca HOM05D003739 ORTHO05D003996 3.5e-11 72.4 144 38.2
Manes.04G075172 Manihot esculenta HOM05D003739 ORTHO05D003996 3.5e-11 72.4 56 64.3
MCO01G601 Micromonas commoda HOM05D003739 ORTHO05D003996 7.9e-11 71.2 98 37.8
Lj8A306T63 Lonicera japonica HOM05D003739 ORTHO05D003996 3.0e-10 69.3 106 43.4
AagrBONN_evm.TU.Sc2ySwM_368.1462 Anthoceros agrestis HOM05D000001 ORTHO05D000003 5.1e-10 68.6 121 32.2
AagrBONN_evm.TU.Sc2ySwM_344.4525 Anthoceros agrestis HOM05D003739 ORTHO05D003996 1.9e-09 66.6 156 30.8
FAN24G0282 Fragaria x ananassa HOM05D003739 ORTHO05D003996 2.5e-09 66.2 133 40.6
CDE02G4347 Ceratophyllum demersum HOM05D003739 ORTHO05D003996 1.6e-08 63.5 55 54.5
FAN27G3438 Fragaria x ananassa HOM05D003739 ORTHO05D003996 1.1e-07 60.8 151 30.5
Thhalv10000433m.g Eutrema salsugineum HOM05D003739 ORTHO05D003996 1.8e-07 60.1 70 45.7
Atru.chr12.1559 Acer truncatum HOM05D003739 ORTHO05D003996 1.2e-06 57.4 86 43.0
SMO293G0020 Selaginella moellendorffii HOM05D027797 ORTHO05D003996 4.5e-06 55.5 85 37.6


User provided reference genes

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