Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv05568 Davidia involucrata HOM05D003667 ORTHO05D004397 2.7e-98 362.1 190 100.0
Hma1.2p1_0106F.1_g051140 Hydrangea macrophylla HOM05D003667 ORTHO05D004397 6.6e-81 304.3 175 90.3
Actinidia07960 Actinidia chinensis HOM05D003667 ORTHO05D004397 2.5e-72 275.8 174 84.5
Actinidia06203 Actinidia chinensis HOM05D003667 ORTHO05D004397 7.3e-72 274.2 174 83.9
CSS0013214 Camellia sinensis var. sinensis HOM05D003667 ORTHO05D004397 7.3e-72 274.2 174 84.5
CSS0004374 Camellia sinensis var. sinensis HOM05D003667 ORTHO05D004397 9.5e-72 273.9 174 84.5
Rhsim13G0206500 Rhododendron simsii HOM05D003667 ORTHO05D004397 9.5e-72 273.9 176 84.7
GSVIVG01029952001 Vitis vinifera HOM05D003667 ORTHO05D004397 4.4e-69 265.0 169 79.9
CsaV3_4G012110 Cucumis sativus L. HOM05D003667 ORTHO05D004397 9.9e-69 263.8 175 75.4
ClCG04G005470 Citrullus lanatus HOM05D003667 ORTHO05D004397 1.3e-68 263.5 170 77.6
Nn7g37255 Nelumbo nucifera HOM05D003667 ORTHO05D004397 1.3e-68 263.5 175 80.0
Lj2A112G40 Lonicera japonica HOM05D003667 ORTHO05D004397 2.2e-68 262.7 175 81.1
CANSAT78G1932 Cannabis sativa HOM05D003667 ORTHO05D004397 2.9e-68 262.3 180 77.8
TAR623G0153 Trochodendron aralioides HOM05D003667 ORTHO05D004397 1.4e-67 260.0 175 76.6
MELO3C008823.2 Cucumis melo HOM05D003667 ORTHO05D004397 1.9e-67 259.6 175 73.7
Nn6g34578 Nelumbo nucifera HOM05D003667 ORTHO05D004397 9.2e-67 257.3 175 78.3
Ciclev10022078m.g Citrus clementina HOM05D003667 ORTHO05D004397 2.1e-66 256.1 176 77.3
Atru.chr2.1481 Acer truncatum HOM05D003667 ORTHO05D004397 1.5e-64 250.0 168 77.4
ClCG02G007830 Citrullus lanatus HOM05D003667 ORTHO05D004397 1.9e-64 249.6 169 74.6
Sed0010728 Sechium edule HOM05D003667 ORTHO05D004397 1.2e-63 246.9 169 73.4
COL.COLO4_28620 Corchorus olitorius HOM05D003667 ORTHO05D004397 4.7e-63 245.0 170 74.1
Sc01g0006150 Simmondsia chinensis HOM05D003667 ORTHO05D004397 4.7e-63 245.0 173 72.8
FAN25G1089 Fragaria x ananassa HOM05D003667 ORTHO05D004397 6.2e-63 244.6 175 72.0
FvH4_3g25040 Fragaria vesca HOM05D003667 ORTHO05D004397 8.1e-63 244.2 175 72.0
MBI05_g12099_MAGBIO Magnolia biondii HOM05D003667 ORTHO05D004397 8.1e-63 244.2 172 72.7
Duzib106G0749 Durio zibethinus HOM05D003667 ORTHO05D004397 1.1e-62 243.8 170 74.1
FAN11G0144 Fragaria x ananassa HOM05D003667 ORTHO05D004397 1.8e-62 243.0 175 71.4
TWI38G1994 Tripterygium wilfordii HOM05D003667 ORTHO05D004397 1.8e-62 243.0 176 72.7
Manes.09G137700 Manihot esculenta HOM05D003667 ORTHO05D004397 2.4e-62 242.7 176 72.7
Hund10761 Selenicereus undatus HOM05D003667 ORTHO05D004397 2.4e-62 242.7 174 71.8
PSO170G5262 Papaver somniferum HOM05D003667 ORTHO05D004397 3.1e-62 242.3 175 70.3
Thecc.05G244000 Theobroma cacao HOM05D003667 ORTHO05D004397 3.1e-62 242.3 170 72.9
Sed0016620 Sechium edule HOM05D003667 ORTHO05D004397 6.8e-62 241.1 167 73.1
FAN21G0540 Fragaria x ananassa HOM05D003667 ORTHO05D004397 8.9e-62 240.7 175 71.4
Gohir.A11G231200 Gossypium hirsutum HOM05D003667 ORTHO05D004397 8.9e-62 240.7 171 73.1
Gohir.D11G242600 Gossypium hirsutum HOM05D003667 ORTHO05D004397 1.2e-61 240.4 171 73.1
Gorai.007G256800 Gossypium raimondii HOM05D003667 ORTHO05D004397 1.2e-61 240.4 171 73.1
Eucgr.K01520 Eucalyptus grandis HOM05D003667 ORTHO05D004397 1.5e-61 240.0 177 70.6
PSO357G0141 Papaver somniferum HOM05D003667 ORTHO05D004397 2.6e-61 239.2 175 70.3
Sabra13G0056100 Salix brachista HOM05D003667 ORTHO05D004397 3.4e-61 238.8 174 70.1
MBI17_g12494_MAGBIO Magnolia biondii HOM05D003667 ORTHO05D004397 4.4e-61 238.4 171 72.5
RcHm_v2.0_Chr5g0045181 Rosa chinensis HOM05D003667 ORTHO05D004397 5.8e-61 238.0 175 69.1
Ah.02g128310 Amaranthus hybridus HOM05D003667 ORTHO05D004397 9.9e-61 237.3 184 67.9
Sopen07g024170 Solanum pennellii HOM05D003667 ORTHO05D004397 1.1e-59 233.8 178 71.3
Prupe.2G153200 Prunus persica HOM05D003667 ORTHO05D004397 1.4e-59 233.4 175 71.4
Aqoxy1G00535 Aquilegia oxysepala HOM05D003667 ORTHO05D004397 1.9e-59 233.0 175 69.7
PSO675G2224 Papaver somniferum HOM05D003667 ORTHO05D004397 1.9e-59 233.0 166 69.3
Solyc07g047720.3 Solanum lycopersicum HOM05D003667 ORTHO05D004397 1.9e-59 233.0 180 71.1
Nitab4.5_0001774g0040 Nicotiana tabacum HOM05D003667 ORTHO05D004397 2.4e-59 232.6 182 70.3
PSO541G6155 Papaver somniferum HOM05D003667 ORTHO05D004397 4.2e-59 231.9 166 68.7
PGSC0003DMG400006127 Solanum tuberosum HOM05D003667 ORTHO05D004397 4.2e-59 231.9 187 68.4
MD02G1195300 Malus domestica HOM05D003667 ORTHO05D004397 9.3e-59 230.7 175 69.7
Ca_13917_v3 Cicer arietinum L. HOM05D003667 ORTHO05D004397 1.6e-58 229.9 174 71.8
Phvul.006G027100 Phaseolus vulgaris HOM05D003667 ORTHO05D004397 1.6e-58 229.9 170 70.6
Potri.013G062900 Populus trichocarpa HOM05D003667 ORTHO05D004397 1.6e-58 229.9 170 69.4
PGSC0003DMG400018832 Solanum tuberosum HOM05D003667 ORTHO05D004397 1.6e-58 229.9 184 68.5
CAN.G992.19 Capsicum annuum HOM05D003667 ORTHO05D004397 4.6e-58 228.4 182 68.7
HanXRQChr07g0197181 Helianthus annuus HOM05D003667 ORTHO05D004397 4.6e-58 228.4 175 70.9
TWI38G1198 Tripterygium wilfordii HOM05D003667 ORTHO05D004397 6.0e-58 228.0 175 68.6
arahy.Tifrunner.gnm1.ann1.FV18MX Arachis hypogaea HOM05D003667 ORTHO05D004397 7.8e-58 227.6 169 69.8
Glyma.08G304700 Glycine max HOM05D003667 ORTHO05D004397 7.8e-58 227.6 174 68.4
Medtr3g450200 Medicago truncatula HOM05D003667 ORTHO05D004397 7.8e-58 227.6 178 69.7
Oeu035461.1 Olea europaea HOM05D003667 ORTHO05D004397 1.3e-57 226.9 184 64.7
arahy.Tifrunner.gnm1.ann1.7QGR70 Arachis hypogaea HOM05D003667 ORTHO05D004397 1.7e-57 226.5 169 69.2
arahy.Tifrunner.gnm1.ann1.VNW58P Arachis hypogaea HOM05D003667 ORTHO05D004397 3.0e-57 225.7 169 69.2
Lj2g0005685 Lotus japonicus HOM05D003667 ORTHO05D004397 1.9e-56 223.0 169 72.2
Nitab4.5_0001741g0020 Nicotiana tabacum HOM05D003667 ORTHO05D004397 1.6e-55 219.9 191 65.4
Psat5g209680 Pisum sativum HOM05D003667 ORTHO05D004397 2.1e-55 219.5 174 67.2
VMungo0540G2144 Vigna mungo HOM05D003667 ORTHO05D004397 4.8e-55 218.4 170 66.5
Dinv25059 Davidia involucrata HOM05D003667 ORTHO05D004397 6.2e-55 218.0 125 92.8
TPR.G8769 Trifolium pratense HOM05D003667 ORTHO05D004397 6.2e-55 218.0 169 66.9
Glyma.18G114700 Glycine max HOM05D003667 ORTHO05D004397 8.1e-55 217.6 170 67.1
Medtr5g090520 Medicago truncatula HOM05D003667 ORTHO05D004397 2.4e-54 216.1 169 66.9
CiPaw.03G011100 Carya illinoinensis HOM05D003667 ORTHO05D004397 3.1e-54 215.7 166 70.5
Cpa.g.sc28.13 Carica papaya HOM05D003667 ORTHO05D004397 5.3e-54 214.9 173 63.0
Lalb_Chr17g0348151 Lupinus albus HOM05D003667 ORTHO05D004397 1.2e-53 213.8 169 66.3
Ca_06238_v3 Cicer arietinum L. HOM05D003667 ORTHO05D004397 2.6e-53 212.6 169 67.5
MSTRG.26557 Avicennia marina HOM05D003667 ORTHO05D004397 5.8e-53 211.5 185 64.3
Migut.L01870 Erythranthe guttata HOM05D003667 ORTHO05D004397 9.9e-53 210.7 186 64.5
THA.LOC104823778 Tarenaya hassleriana HOM05D003667 ORTHO05D004397 9.9e-53 210.7 175 62.3
TPR.G14738 Trifolium pratense HOM05D003667 ORTHO05D004397 2.2e-52 209.5 170 68.2
CDE10G1021 Ceratophyllum demersum HOM05D003667 ORTHO05D004397 2.9e-52 209.1 168 63.7
Carub.0004s1876 Capsella rubella HOM05D003667 ORTHO05D004397 4.9e-52 208.4 175 60.6
AL4G33130 Arabidopsis lyrata HOM05D003667 ORTHO05D004397 8.4e-52 207.6 169 60.9
Psat2g018160 Pisum sativum HOM05D003667 ORTHO05D004397 1.1e-51 207.2 169 64.5
Haze_14026 Corylus avellana HOM05D003667 ORTHO05D004397 1.4e-51 206.8 165 66.1
Zm00001eb052810 Zea mays HOM05D003667 ORTHO05D004397 3.2e-51 205.7 184 60.3
CARHR131380 Cardamine hirsuta HOM05D003667 ORTHO05D004397 4.2e-51 205.3 175 59.4
AT2G36900 Arabidopsis thaliana HOM05D003667 ORTHO05D004397 5.4e-51 204.9 168 61.3
BraA05t19858Z Brassica rapa HOM05D003667 ORTHO05D004397 5.4e-51 204.9 169 60.4
A05p08960 Brassica napus HOM05D003667 ORTHO05D004397 7.1e-51 204.5 169 60.4
C04p11070 Brassica napus HOM05D003667 ORTHO05D004397 9.3e-51 204.1 169 60.4
BolC4t22755H Brassica oleracea HOM05D003667 ORTHO05D004397 9.3e-51 204.1 169 60.4
unitig_8.g4943 Utricularia gibba HOM05D003667 ORTHO05D004397 3.5e-50 202.2 186 58.6
Lsat_1_v5_gn_6_31701 Lactuca sativa HOM05D003667 ORTHO05D004397 4.6e-50 201.8 138 79.0
Sp4g19200 Schrenkiella parvula HOM05D003667 ORTHO05D004397 4.6e-50 201.8 175 58.3
Cc03_g11050 Coffea canephora HOM05D003667 ORTHO05D004397 6.0e-50 201.4 170 64.7
ECA238G3478 Erigeron canadensis HOM05D003667 ORTHO05D004397 1.3e-49 200.3 141 77.3
BcaB02g09321 Brassica carinata HOM05D003667 ORTHO05D004397 3.0e-49 199.1 170 58.8
Thhalv10017208m.g Eutrema salsugineum HOM05D003667 ORTHO05D004397 5.1e-49 198.4 169 58.6
Lsat_1_v5_gn_2_103600 Lactuca sativa HOM05D003667 ORTHO05D004397 5.1e-49 198.4 138 76.8
Aa31LG6G14320 Aethionema arabicum HOM05D003667 ORTHO05D004397 1.1e-48 197.2 170 60.0
Peaxi162Scf00776g00027 Petunia axillaris HOM05D003667 ORTHO05D004397 1.1e-48 197.2 172 64.0
HanXRQChr14g0453611 Helianthus annuus HOM05D003667 ORTHO05D004397 9.6e-48 194.1 135 75.6
Thhalv10014611m.g Eutrema salsugineum HOM05D003667 ORTHO05D004397 1.3e-47 193.7 169 58.0
Os03g0655200 Oryza sativa ssp. japonica HOM05D003667 ORTHO05D004397 3.6e-47 192.2 177 58.2
AUR62008662 Chenopodium quinoa HOM05D003667 ORTHO05D004397 1.1e-46 190.7 136 74.3
SEGI_40073 Sequoiadendron giganteum HOM05D003667 ORTHO05D004397 1.1e-46 190.7 178 56.2
CARHR257860 Cardamine hirsuta HOM05D003667 ORTHO05D004397 3.1e-46 189.1 169 56.8
Carub.0008s1055 Capsella rubella HOM05D003667 ORTHO05D004397 3.4e-45 185.7 169 56.2
AL8G24670 Arabidopsis lyrata HOM05D003667 ORTHO05D004397 7.6e-45 184.5 169 56.2
HPP92_027259 Vanilla planifolia HOM05D003667 ORTHO05D004397 7.6e-45 184.5 132 71.2
SGA_v2.0_scaffold41G15803 Striga asiatica HOM05D003667 ORTHO05D004397 9.9e-45 184.1 228 51.8
AT5G50440 Arabidopsis thaliana HOM05D003667 ORTHO05D004397 6.4e-44 181.4 169 55.0
SGA_v2.0_scaffold392G50657 Striga asiatica HOM05D003667 ORTHO05D004397 1.6e-42 176.8 207 51.2
SMO358G0442 Selaginella moellendorffii HOM05D003667 ORTHO05D004397 7.9e-42 174.5 175 54.9
EL10Ac7g17477 Beta vulgaris HOM05D003667 ORTHO05D004397 1.8e-41 173.3 139 66.9
Mapoly0001s0234 Marchantia polymorpha HOM05D003667 ORTHO05D004397 2.5e-40 169.5 176 51.1
DCAR_013483 Daucus carota HOM05D003667 ORTHO05D004397 2.1e-39 166.4 109 77.1
Pp3c7_13000 Physcomitrium patens HOM05D003667 ORTHO05D004397 2.4e-38 162.9 195 46.2
Oeu003870.1 Olea europaea HOM05D003667 ORTHO05D004397 4.5e-37 158.7 127 68.5
Pp3c11_11980 Physcomitrium patens HOM05D003667 ORTHO05D004397 4.5e-37 158.7 190 46.8
Prupe.7G022400 Prunus persica HOM05D003667 ORTHO05D004397 1.7e-36 156.8 109 76.1
arahy.Tifrunner.gnm1.ann1.B982CP Arachis hypogaea HOM05D003667 ORTHO05D004397 3.0e-33 146.0 169 50.3
Lj6g0022641 Lotus japonicus HOM05D003667 ORTHO05D004397 3.9e-33 145.6 109 70.6
CSS0044789 Camellia sinensis var. sinensis HOM05D003667 ORTHO05D004397 6.7e-33 144.8 90 86.7
Rhsim02G0195900 Rhododendron simsii HOM05D003667 ORTHO05D004397 1.1e-32 144.1 90 86.7
Rhsim02G0194700 Rhododendron simsii HOM05D003667 ORTHO05D004397 9.6e-32 141.0 85 88.2
Rhsim02G0195800 Rhododendron simsii HOM05D003667 ORTHO05D004397 9.6e-32 141.0 85 88.2
AagrBONN_evm.TU.Sc2ySwM_117.3822 Anthoceros agrestis HOM05D003667 ORTHO05D004397 1.6e-31 140.2 177 45.2
CDE10G1036 Ceratophyllum demersum HOM05D003667 ORTHO05D004397 1.6e-31 140.2 117 61.5
AagrBONN_evm.TU.Sc2ySwM_362.869 Anthoceros agrestis HOM05D003667 ORTHO05D004397 2.8e-31 139.4 183 44.3
CiPaw.04G007600 Carya illinoinensis HOM05D003667 ORTHO05D004397 4.8e-31 138.7 109 68.8
BcaC02g11814 Brassica carinata HOM05D003667 ORTHO05D004397 2.4e-30 136.3 109 61.5
AUR62033108 Chenopodium quinoa HOM05D003667 ORTHO05D004397 8.4e-28 127.9 90 73.3
Actinidia37807 Actinidia chinensis HOM05D003667 ORTHO05D004397 1.6e-26 123.6 175 48.6
arahy.Tifrunner.gnm1.ann1.K13S6W Arachis hypogaea HOM05D004599 ORTHO05D005564 1.8e-25 120.2 139 49.6
QL07p048797 Quercus lobata HOM05D000002 ORTHO05D000001 3.9e-25 119.0 188 45.7
arahy.Tifrunner.gnm1.ann1.835HL2 Arachis hypogaea HOM05D004313 ORTHO05D004397 1.5e-24 117.1 92 62.0
AagrBONN_evm.TU.Sc2ySwM_368.3326 Anthoceros agrestis HOM05D003667 ORTHO05D004397 2.5e-24 116.3 183 41.0
Actinidia03933 Actinidia chinensis HOM05D003667 ORTHO05D004397 1.6e-23 113.6 105 60.0
CSS0038188 Camellia sinensis var. sinensis HOM05D003667 ORTHO05D004397 2.2e-23 113.2 80 75.0
CAN.G1036.8 Capsicum annuum HOM05D003667 ORTHO05D004397 2.8e-23 112.8 157 48.4
Cre12.g554200 Chlamydomonas reinhardtii HOM05D003667 ORTHO05D004397 1.4e-22 110.5 171 42.7
Oeu063104.1 Olea europaea HOM05D003667 ORTHO05D004397 5.3e-22 108.6 90 64.4
unitig_578.g16057 Utricularia gibba HOM05D003667 ORTHO05D004397 6.9e-22 108.2 152 43.4
Solyc05g040100.4 Solanum lycopersicum HOM05D003667 ORTHO05D004397 1.5e-21 107.1 82 68.3
MSTRG.10431 Avicennia marina HOM05D003667 ORTHO05D004397 5.9e-21 105.1 91 61.5
Nitab4.5_0001701g0060 Nicotiana tabacum HOM05D003667 ORTHO05D004397 2.2e-20 103.2 168 42.3
Nitab4.5_0002669g0010 Nicotiana tabacum HOM05D003667 ORTHO05D004397 3.8e-20 102.4 101 59.4
arahy.Tifrunner.gnm1.ann1.SS7A45 Arachis hypogaea HOM05D000726 ORTHO05D004397 5.5e-19 98.6 79 63.3
arahy.Tifrunner.gnm1.ann1.SJAT5A Arachis hypogaea HOM05D003667 ORTHO05D003672 1.6e-18 97.1 150 40.0
Ah.08g213170 Amaranthus hybridus HOM05D003667 ORTHO05D004397 3.0e-17 92.8 86 54.7
Ah.08g213160 Amaranthus hybridus HOM05D003667 ORTHO05D004397 8.8e-17 91.3 64 70.3
Lalb_Chr10g0106511 Lupinus albus HOM05D003667 ORTHO05D004397 1.1e-16 90.9 81 59.3
BcaC02g10601 Brassica carinata HOM05D003667 ORTHO05D004397 5.7e-16 88.6 137 39.4
MCO05G601 Micromonas commoda HOM05D003667 ORTHO05D004397 1.3e-15 87.4 170 34.1
PRCOL_00002098 Prasinoderma coloniale HOM05D003667 ORTHO05D004397 6.3e-15 85.1 166 33.7
Solyc05g040090.1 Solanum lycopersicum HOM05D003667 ORTHO05D004397 2.6e-13 79.7 87 51.7
Lalb_Chr10g0106501 Lupinus albus HOM05D003667 ORTHO05D004397 4.5e-13 79.0 62 66.1
VMungo0720G0063 Vigna mungo HOM05D003667 ORTHO05D004397 4.5e-13 79.0 72 55.6
Haze_20440 Corylus avellana HOM05D003667 ORTHO05D004397 1.0e-12 77.8 62 67.7
Cfa017699 Carpinus fangiana HOM05D003667 ORTHO05D004397 2.5e-11 73.2 62 64.5
C04p25660 Brassica napus HOM05D003667 ORTHO05D004397 7.2e-11 71.6 62 58.1
C05p50890 Brassica napus HOM05D003667 ORTHO05D004397 7.2e-11 71.6 62 58.1
FvH4_3g32534 Fragaria vesca HOM05D003667 ORTHO05D004397 3.6e-10 69.3 56 69.6
HanXRQChr04g0115761 Helianthus annuus HOM05D003667 ORTHO05D004397 4.7e-10 68.9 50 70.0
Rhsim02G0196100 Rhododendron simsii HOM05D000056 ORTHO05D000019 2.0e-08 63.5 58 62.1
COL.COLO4_28622 Corchorus olitorius HOM05D003667 ORTHO05D004397 2.6e-08 63.2 50 68.0
arahy.Tifrunner.gnm1.ann1.X6I371 Arachis hypogaea HOM05D003667 ORTHO05D004397 9.7e-08 61.2 65 52.3
MD05G1212000 Malus domestica HOM05D003667 ORTHO05D246792 1.3e-07 60.8 41 73.2
Medtr1g102820 Medicago truncatula HOM05D003667 ORTHO05D004397 3.7e-07 59.3 58 62.1
Oeu032224.2 Olea europaea HOM05D003667 ORTHO05D004397 8.2e-07 58.2 44 72.7
BNapus_Darmor_BZH_scaffold_271p00010 Brassica napus HOM05D003667 ORTHO05D004397 1.8e-06 57.0 49 57.1
BcaB06g28959 Brassica carinata HOM05D003667 ORTHO05D004397 4.1e-06 55.8 84 41.7


User provided reference genes

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