Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv05534 Davidia involucrata HOM05D005125 ORTHO05D006777 1.7e-171 605.9 301 100.0
Dinv31939 Davidia involucrata HOM05D005125 ORTHO05D006777 1.6e-145 519.6 287 90.6
CSS0022218 Camellia sinensis var. sinensis HOM05D005125 ORTHO05D006777 1.1e-130 470.3 286 82.2
Rhsim06G0007400 Rhododendron simsii HOM05D005125 ORTHO05D006777 2.1e-129 466.1 286 79.4
Actinidia37922 Actinidia chinensis HOM05D005125 ORTHO05D006777 1.8e-128 463.0 286 81.1
GSVIVG01013360001 Vitis vinifera HOM05D005125 ORTHO05D006777 1.9e-127 459.5 281 80.8
Cc10_g00670 Coffea canephora HOM05D005125 ORTHO05D006777 1.8e-125 453.0 297 77.4
Hma1.2p1_0507F.1_g168460 Hydrangea macrophylla HOM05D005125 ORTHO05D006777 3.8e-123 445.3 274 82.5
Cfa014076 Carpinus fangiana HOM05D005125 ORTHO05D006777 7.9e-121 437.6 287 75.3
Gohir.D01G091900 Gossypium hirsutum HOM05D005125 ORTHO05D006777 1.0e-120 437.2 274 78.5
Duzib093G0577 Durio zibethinus HOM05D005125 ORTHO05D006777 1.3e-120 436.8 276 77.5
Gorai.002G117000 Gossypium raimondii HOM05D005125 ORTHO05D006777 2.3e-120 436.0 274 78.1
Solyc04g082340.3 Solanum lycopersicum HOM05D005125 ORTHO05D006777 2.3e-120 436.0 284 75.7
Sopen04g035960 Solanum pennellii HOM05D005125 ORTHO05D006777 3.0e-120 435.6 284 75.7
Gohir.A01G105600 Gossypium hirsutum HOM05D005125 ORTHO05D006777 8.7e-120 434.1 274 77.7
Prupe.1G354500 Prunus persica HOM05D005125 ORTHO05D006777 2.5e-119 432.6 281 74.4
vmacro21811 Vaccinium macrocarpon HOM05D005125 ORTHO05D006777 2.5e-119 432.6 325 68.3
Migut.C00961 Erythranthe guttata HOM05D005125 ORTHO05D006777 3.3e-119 432.2 286 74.5
Lj4A11T69 Lonicera japonica HOM05D005125 ORTHO05D006777 3.3e-119 432.2 248 85.5
TAR625G0173 Trochodendron aralioides HOM05D005125 ORTHO05D006777 3.3e-119 432.2 265 80.0
Ciclev10003241m.g Citrus clementina HOM05D005125 ORTHO05D006777 4.3e-119 431.8 287 75.3
Thecc.08G058900 Theobroma cacao HOM05D005125 ORTHO05D006777 7.4e-119 431.0 278 77.7
CiPaw.07G138900 Carya illinoinensis HOM05D005125 ORTHO05D006777 1.3e-118 430.3 286 76.2
Sabra05G0193900 Salix brachista HOM05D005125 ORTHO05D006777 1.3e-118 430.3 270 78.1
Duzib116G0840 Durio zibethinus HOM05D005125 ORTHO05D006777 2.8e-118 429.1 273 77.7
Potri.005G250300 Populus trichocarpa HOM05D005125 ORTHO05D006777 1.5e-116 423.3 270 77.0
CiPaw.08G073000 Carya illinoinensis HOM05D005125 ORTHO05D006777 2.6e-116 422.5 290 73.8
MD15G1002000 Malus domestica HOM05D005125 ORTHO05D006777 2.6e-116 422.5 282 73.8
Manes.05G134400 Manihot esculenta HOM05D005125 ORTHO05D006777 2.6e-116 422.5 278 74.8
Lsat_1_v5_gn_2_5181 Lactuca sativa HOM05D005125 ORTHO05D006777 5.9e-116 421.4 275 76.0
Potri.002G010800 Populus trichocarpa HOM05D005125 ORTHO05D006777 5.9e-116 421.4 270 76.7
MD08G1002400 Malus domestica HOM05D005125 ORTHO05D006777 7.6e-116 421.0 283 72.8
QL02p014036 Quercus lobata HOM05D005125 ORTHO05D006777 1.3e-115 420.2 273 76.2
Cpa.g.sc26.198 Carica papaya HOM05D005125 ORTHO05D006777 1.7e-115 419.9 272 74.6
Nn5g30942 Nelumbo nucifera HOM05D005125 ORTHO05D006777 3.8e-115 418.7 279 74.9
Glyma.04G017900 Glycine max HOM05D005125 ORTHO05D006777 1.9e-114 416.4 278 74.8
Peaxi162Scf00893g00037 Petunia axillaris HOM05D005125 ORTHO05D006777 5.5e-114 414.8 269 76.6
Glyma.06G018200 Glycine max HOM05D005125 ORTHO05D006777 7.2e-114 414.5 287 73.5
FvH4_2g37450 Fragaria vesca HOM05D005125 ORTHO05D006777 9.3e-114 414.1 269 74.0
FAN27G2626 Fragaria x ananassa HOM05D005125 ORTHO05D006777 9.3e-114 414.1 269 74.0
RcHm_v2.0_Chr6g0304271 Rosa chinensis HOM05D005125 ORTHO05D006777 1.6e-113 413.3 261 75.5
TWI56G0714 Tripterygium wilfordii HOM05D005125 ORTHO05D006777 1.6e-113 413.3 275 73.1
Rhsim07G0254900 Rhododendron simsii HOM05D005125 ORTHO05D006777 2.1e-113 412.9 236 85.2
Atru.chr13.135 Acer truncatum HOM05D005125 ORTHO05D006777 7.9e-113 411.0 284 72.9
Manes.18G005400 Manihot esculenta HOM05D005125 ORTHO05D006777 1.4e-112 410.2 281 73.0
Sc15g0004430 Simmondsia chinensis HOM05D005125 ORTHO05D006777 1.4e-112 410.2 288 71.5
Eucgr.L00923 Eucalyptus grandis HOM05D005125 ORTHO05D006777 1.8e-112 409.8 280 72.1
HanXRQChr06g0183991 Helianthus annuus HOM05D005125 ORTHO05D006777 5.1e-112 408.3 266 75.6
Nitab4.5_0000588g0110 Nicotiana tabacum HOM05D005125 ORTHO05D006777 6.7e-112 407.9 292 72.9
Duzib041G0467 Durio zibethinus HOM05D005125 ORTHO05D006777 8.8e-112 407.5 278 74.1
unitig_747.g21516 Utricularia gibba HOM05D005125 ORTHO05D006777 8.8e-112 407.5 271 72.0
FAN20G1306 Fragaria x ananassa HOM05D005125 ORTHO05D006777 1.1e-111 407.1 269 73.2
PGSC0003DMG400009979 Solanum tuberosum HOM05D005125 ORTHO05D006777 1.5e-111 406.8 257 77.0
vmacro04403 Vaccinium macrocarpon HOM05D005125 ORTHO05D006777 1.5e-111 406.8 263 77.9
THA.LOC104813172 Tarenaya hassleriana HOM05D005125 ORTHO05D006777 4.3e-111 405.2 272 74.3
Haze_22773 Corylus avellana HOM05D005125 ORTHO05D006777 5.7e-111 404.8 233 82.0
ClCG08G009440 Citrullus lanatus HOM05D005125 ORTHO05D006777 1.7e-110 403.3 272 72.8
Lj1g0005535 Lotus japonicus HOM05D005125 ORTHO05D006777 1.7e-110 403.3 280 72.9
Lalb_Chr11g0061631 Lupinus albus HOM05D005125 ORTHO05D006777 2.8e-110 402.5 284 72.9
Medtr3g115290 Medicago truncatula HOM05D005125 ORTHO05D006777 2.8e-110 402.5 280 71.1
FAN15G0126 Fragaria x ananassa HOM05D005125 ORTHO05D006777 4.8e-110 401.7 283 70.0
Phvul.009G010800 Phaseolus vulgaris HOM05D005125 ORTHO05D006777 4.8e-110 401.7 280 72.9
Aqoxy6G01728 Aquilegia oxysepala HOM05D005125 ORTHO05D006777 8.2e-110 401.0 265 74.0
ECA238G0848 Erigeron canadensis HOM05D005125 ORTHO05D006777 8.2e-110 401.0 235 82.6
PSO675G8084 Papaver somniferum HOM05D005125 ORTHO05D006777 8.2e-110 401.0 269 73.2
AT5G42320 Arabidopsis thaliana HOM05D005125 ORTHO05D006777 1.1e-109 400.6 260 75.8
EL10Ac1g01960 Beta vulgaris HOM05D005125 ORTHO05D006777 1.1e-109 400.6 282 71.6
PSO541G3228 Papaver somniferum HOM05D005125 ORTHO05D006777 1.1e-109 400.6 269 73.2
SalBow7G1095 Salvia bowleyana HOM05D005125 ORTHO05D006777 1.8e-109 399.8 301 67.1
CANSAT25G1708 Cannabis sativa HOM05D005125 ORTHO05D006777 2.4e-109 399.4 286 70.3
Psat5g159120 Pisum sativum HOM05D005125 ORTHO05D006777 4.1e-109 398.7 302 67.9
Lalb_Chr23g0265791 Lupinus albus HOM05D005125 ORTHO05D006777 6.9e-109 397.9 280 73.2
Ca_15433_v3 Cicer arietinum L. HOM05D005125 ORTHO05D006777 9.1e-109 397.5 280 71.4
MELO3C026539.2 Cucumis melo HOM05D005125 ORTHO05D006777 9.1e-109 397.5 273 71.8
BcaB07g31085 Brassica carinata HOM05D005125 ORTHO05D006777 1.2e-108 397.1 283 70.3
AL8G19280 Arabidopsis lyrata HOM05D005125 ORTHO05D006777 1.5e-108 396.7 285 70.9
BcaC04g22006 Brassica carinata HOM05D005125 ORTHO05D006777 2.0e-108 396.4 253 75.1
C09p24930 Brassica napus HOM05D005125 ORTHO05D006777 2.0e-108 396.4 253 75.1
PGR083G1107 Punica granatum HOM05D005125 ORTHO05D006777 2.6e-108 396.0 282 69.9
CARHR284930 Cardamine hirsuta HOM05D005125 ORTHO05D006777 4.5e-108 395.2 260 73.1
A09p19570 Brassica napus HOM05D005125 ORTHO05D006777 1.0e-107 394.0 253 73.5
Hund05112 Selenicereus undatus HOM05D005125 ORTHO05D006777 1.0e-107 394.0 276 70.3
TPR.G38202 Trifolium pratense HOM05D005125 ORTHO05D006777 1.0e-107 394.0 280 70.0
Ah.00g000800 Amaranthus hybridus HOM05D005125 ORTHO05D006777 1.3e-107 393.7 282 70.9
BraA09t37570Z Brassica rapa HOM05D005125 ORTHO05D006777 1.7e-107 393.3 253 73.5
Carub.0008s0686 Capsella rubella HOM05D005125 ORTHO05D006777 1.7e-107 393.3 259 73.7
MD12G1003300 Malus domestica HOM05D005125 ORTHO05D006777 1.7e-107 393.3 292 67.8
DCAR_016769 Daucus carota HOM05D005125 ORTHO05D006777 3.8e-107 392.1 286 68.5
Sp7g08250 Schrenkiella parvula HOM05D005125 ORTHO05D006777 3.8e-107 392.1 248 75.4
Actinidia28601 Actinidia chinensis HOM05D005125 ORTHO05D006777 6.5e-107 391.3 267 74.2
Aa31LG9G12440 Aethionema arabicum HOM05D005125 ORTHO05D006777 1.1e-106 390.6 297 68.0
VMungo1309G1587 Vigna mungo HOM05D005125 ORTHO05D006777 1.4e-106 390.2 280 70.7
CsaV3_6G031580 Cucumis sativus L. HOM05D005125 ORTHO05D006777 3.2e-106 389.0 274 71.2
CAN.G311.115 Capsicum annuum HOM05D005125 ORTHO05D006777 1.2e-105 387.1 240 78.3
arahy.Tifrunner.gnm1.ann1.1X7ZBM Arachis hypogaea HOM05D005125 ORTHO05D006777 3.6e-105 385.6 270 74.1
Lsat_1_v5_gn_8_26201 Lactuca sativa HOM05D005125 ORTHO05D006777 4.7e-105 385.2 276 69.6
arahy.Tifrunner.gnm1.ann1.VXG7Z6 Arachis hypogaea HOM05D005125 ORTHO05D006777 5.1e-104 381.7 270 73.7
Gorai.009G188100 Gossypium raimondii HOM05D005125 ORTHO05D006777 5.7e-103 378.3 274 67.5
AUR62036871 Chenopodium quinoa HOM05D005125 ORTHO05D006777 1.3e-102 377.1 240 75.8
SGA_v2.0_scaffold108G30863 Striga asiatica HOM05D005125 ORTHO05D006777 1.7e-102 376.7 308 64.6
Ca_15458_v3 Cicer arietinum L. HOM05D005125 ORTHO05D006777 2.2e-102 376.3 231 77.5
Sed0024407 Sechium edule HOM05D005125 ORTHO05D006777 6.3e-102 374.8 233 78.1
Gohir.D05G182800 Gossypium hirsutum HOM05D005125 ORTHO05D006777 1.4e-101 373.6 274 66.4
EL10Ac7g16836 Beta vulgaris HOM05D005125 ORTHO05D006777 6.9e-101 371.3 273 69.2
Gohir.A05G179600 Gossypium hirsutum HOM05D005125 ORTHO05D006777 3.4e-100 369.0 274 66.1
ATR0661G305 Amborella trichopoda HOM05D005125 ORTHO05D006777 1.1e-98 364.0 270 67.8
HPP92_007117 Vanilla planifolia HOM05D005125 ORTHO05D006777 1.0e-96 357.5 260 67.7
Os02g0119300 Oryza sativa ssp. japonica HOM05D005125 ORTHO05D006777 1.1e-95 354.0 248 67.7
Zm00001eb209310 Zea mays HOM05D005125 ORTHO05D006777 2.0e-95 353.2 270 63.7
MBI08_g41521_MAGBIO Magnolia biondii HOM05D005125 ORTHO05D006777 1.7e-94 350.1 260 68.5
CDE05G1644 Ceratophyllum demersum HOM05D005125 ORTHO05D006777 1.1e-93 347.4 271 64.6
Eucgr.E03516 Eucalyptus grandis HOM05D005125 ORTHO05D006777 1.1e-90 337.4 229 73.4
SHI07997 Sapria himalayana HOM05D005125 ORTHO05D006777 3.8e-83 312.4 263 60.8
Thhalv10027780m.g Eutrema salsugineum HOM05D005125 ORTHO05D006777 2.7e-81 306.2 184 78.8
BcaNung05255 Brassica carinata HOM05D005125 ORTHO05D006777 2.4e-77 293.1 208 70.7
AagrBONN_evm.TU.Sc2ySwM_362.2863 Anthoceros agrestis HOM05D005125 ORTHO05D006777 3.5e-76 289.3 271 55.4
CSS0019336 Camellia sinensis var. sinensis HOM05D005125 ORTHO05D006777 6.6e-75 285.0 149 88.6
Mapoly0045s0063 Marchantia polymorpha HOM05D005125 ORTHO05D006777 8.6e-75 284.6 244 57.0
SMO358G0159 Selaginella moellendorffii HOM05D005125 ORTHO05D006777 1.5e-71 273.9 236 58.5
SEGI_03459 Sequoiadendron giganteum HOM05D005125 ORTHO05D006777 7.8e-68 261.5 195 65.1
Pp3c20_16570 Physcomitrium patens HOM05D005125 ORTHO05D006777 6.6e-67 258.5 262 51.1
ECA238G3411 Erigeron canadensis HOM05D005125 ORTHO05D006777 1.3e-62 244.2 135 81.5
Oeu056206.2 Olea europaea HOM05D005125 ORTHO05D006777 1.4e-61 240.7 145 82.8
COL.COLO4_06662 Corchorus olitorius HOM05D005125 ORTHO05D006777 5.2e-56 222.2 130 79.2
Cre11.g467631 Chlamydomonas reinhardtii HOM05D005125 ORTHO05D006777 5.1e-51 205.7 249 42.6
PRCOL_00006814 Prasinoderma coloniale HOM05D005125 ORTHO05D006777 5.6e-50 202.2 189 53.4
BolC9t55384H Brassica oleracea HOM05D005125 ORTHO05D006777 1.2e-47 194.5 144 70.8
SGA_v2.0_scaffold83G26467 Striga asiatica HOM05D005125 ORTHO05D006777 7.8e-36 155.2 150 59.3
Cc00_g07920 Coffea canephora HOM05D005125 ORTHO05D006777 3.0e-35 153.3 156 58.3
ECA238G2450 Erigeron canadensis HOM05D000240 ORTHO05D002721 6.4e-30 135.6 77 79.2
Lsat_1_v5_gn_1_87521 Lactuca sativa HOM05D005125 ORTHO05D007904 4.6e-20 102.8 63 69.8
Cc10_g14360 Coffea canephora HOM05D005125 ORTHO05D006777 2.8e-17 93.6 58 77.6
Cre16.g668950 Chlamydomonas reinhardtii HOM05D005125 ORTHO05D034490 6.2e-17 92.4 209 30.6
PRCOL_00005708 Prasinoderma coloniale HOM05D005125 ORTHO05D034490 2.6e-15 87.0 317 26.2
MCO16G405 Micromonas commoda HOM05D005125 ORTHO05D006777 2.9e-14 83.6 71 50.7
SEGI_37631 Sequoiadendron giganteum HOM05D005125 ORTHO05D006777 3.8e-14 83.2 49 71.4
MD00G1076900 Malus domestica HOM05D005125 ORTHO05D006777 1.4e-13 81.3 46 73.9
ECA233G5321 Erigeron canadensis HOM05D000003 ORTHO05D000004 4.2e-13 79.7 91 47.3
SGA_v2.0_scaffold195G40773 Striga asiatica HOM05D005125 ORTHO05D006777 5.5e-13 79.3 51 60.8
ECA233G3085 Erigeron canadensis HOM05D000006 ORTHO05D000001 6.0e-12 75.9 46 71.7


User provided reference genes

Program Settings