Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv05504 Davidia involucrata HOM05D006057 ORTHO05D007224 3.0e-39 164.9 90 100.0
CSS0031729 Camellia sinensis var. sinensis HOM05D006057 ORTHO05D007224 1.6e-29 132.5 89 84.3
Hma1.2p1_0350F.1_g132530 Hydrangea macrophylla HOM05D006057 ORTHO05D007224 2.2e-26 122.1 90 78.9
vmacro02351 Vaccinium macrocarpon HOM05D006057 ORTHO05D007224 3.5e-24 114.8 89 73.0
Rhsim01G0001300 Rhododendron simsii HOM05D006057 ORTHO05D007224 1.0e-23 113.2 89 74.2
Lju2566A1T37 Lonicera japonica HOM05D006057 ORTHO05D007224 3.6e-21 104.8 89 69.7
Lj1C4G2 Lonicera japonica HOM05D006057 ORTHO05D007224 4.7e-21 104.4 89 73.0
Oeu048368.1 Olea europaea HOM05D006057 ORTHO05D007224 2.4e-20 102.1 89 62.9
QL09p037524 Quercus lobata HOM05D006057 ORTHO05D007224 2.4e-20 102.1 90 68.9
Manes.05G006500 Manihot esculenta HOM05D006057 ORTHO05D007224 2.6e-19 98.6 90 58.9
Duzib138G1502 Durio zibethinus HOM05D006057 ORTHO05D007224 7.6e-19 97.1 91 61.5
Solyc03g118440.3 Solanum lycopersicum HOM05D006057 ORTHO05D007224 7.6e-19 97.1 89 60.7
Sopen03g037330 Solanum pennellii HOM05D006057 ORTHO05D007224 7.6e-19 97.1 89 60.7
Eucgr.A00985 Eucalyptus grandis HOM05D006057 ORTHO05D007224 1.3e-18 96.3 90 62.2
Atru.chr5.830 Acer truncatum HOM05D006057 ORTHO05D007224 1.7e-18 95.9 89 60.7
PGSC0003DMG400014183 Solanum tuberosum HOM05D006057 ORTHO05D007224 1.7e-18 95.9 89 59.6
Gohir.D12G122500 Gossypium hirsutum HOM05D006057 ORTHO05D007224 2.2e-18 95.5 92 62.0
Gorai.008G133300 Gossypium raimondii HOM05D006057 ORTHO05D007224 2.2e-18 95.5 92 62.0
Potri.014G110300 Populus trichocarpa HOM05D006057 ORTHO05D007224 2.2e-18 95.5 80 68.8
COL.COLO4_23092 Corchorus olitorius HOM05D006057 ORTHO05D007224 3.8e-18 94.7 91 60.4
Lsat_1_v5_gn_2_108401 Lactuca sativa HOM05D006057 ORTHO05D007224 6.4e-18 94.0 88 59.1
Peaxi162Scf00314g00430 Petunia axillaris HOM05D006057 ORTHO05D007224 6.4e-18 94.0 88 59.1
ECA238G2998 Erigeron canadensis HOM05D006057 ORTHO05D007224 1.9e-17 92.4 88 62.5
Nitab4.5_0002450g0080 Nicotiana tabacum HOM05D006057 ORTHO05D007224 2.4e-17 92.0 89 58.4
CAN.G843.33 Capsicum annuum HOM05D006057 ORTHO05D007224 3.2e-17 91.7 89 57.3
PGR042G0310 Punica granatum HOM05D006057 ORTHO05D007224 3.2e-17 91.7 87 59.8
TAR633G2394 Trochodendron aralioides HOM05D006057 ORTHO05D007224 9.2e-17 90.1 90 58.9
Nitab4.5_0002046g0150 Nicotiana tabacum HOM05D006057 ORTHO05D007224 4.6e-16 87.8 89 56.2
HanXRQChr07g0194641 Helianthus annuus HOM05D006057 ORTHO05D007224 6.0e-16 87.4 88 58.0
GSVIVG01028268001 Vitis vinifera HOM05D006057 ORTHO05D007224 1.0e-15 86.7 66 72.7
Sp6g39640 Schrenkiella parvula HOM05D006057 ORTHO05D007224 1.7e-15 85.9 89 56.2
TWI14G0531 Tripterygium wilfordii HOM05D006057 ORTHO05D007224 2.3e-15 85.5 90 58.9
Gohir.A12G118700 Gossypium hirsutum HOM05D006057 ORTHO05D007224 3.0e-15 85.1 92 56.5
Migut.L01023 Erythranthe guttata HOM05D006057 ORTHO05D007224 6.6e-15 84.0 89 56.2
Medtr4g118050 Medicago truncatula HOM05D006057 ORTHO05D007224 6.6e-15 84.0 83 62.7
Aa31LG1G21980 Aethionema arabicum HOM05D006057 ORTHO05D007224 1.1e-14 83.2 89 52.8
SGA_v2.0_scaffold36G14563 Striga asiatica HOM05D006057 ORTHO05D007224 1.5e-14 82.8 89 55.1
MBI18_g03875_MAGBIO Magnolia biondii HOM05D006057 ORTHO05D007224 1.9e-14 82.4 88 53.4
TWI59G0504 Tripterygium wilfordii HOM05D006057 ORTHO05D007224 1.9e-14 82.4 89 58.4
DCAR_012292 Daucus carota HOM05D006057 ORTHO05D007224 2.5e-14 82.0 88 58.0
Medtr1g085440 Medicago truncatula HOM05D006057 ORTHO05D007224 2.5e-14 82.0 80 57.5
SGA_v2.0_scaffold38G15005 Striga asiatica HOM05D006057 ORTHO05D007224 2.5e-14 82.0 89 52.8
Cpa.g.sc57.50 Carica papaya HOM05D006057 ORTHO05D007224 3.3e-14 81.6 91 54.9
Nn4g25242 Nelumbo nucifera HOM05D006057 ORTHO05D007224 4.3e-14 81.3 87 58.6
Prupe.3G028700 Prunus persica HOM05D006057 ORTHO05D007224 4.3e-14 81.3 89 52.8
Sabra02G0131200 Salix brachista HOM05D006057 ORTHO05D007224 4.3e-14 81.3 89 55.1
TPR.G3076 Trifolium pratense HOM05D006057 ORTHO05D007224 5.6e-14 80.9 83 60.2
Glyma.10G140400 Glycine max HOM05D006057 ORTHO05D007224 7.3e-14 80.5 89 58.4
Medtr1g085355 Medicago truncatula HOM05D006057 ORTHO05D007224 7.3e-14 80.5 83 60.2
Haze_05170 Corylus avellana HOM05D006057 ORTHO05D007224 9.6e-14 80.1 66 69.7
TPR.G3097 Trifolium pratense HOM05D006057 ORTHO05D007224 1.2e-13 79.7 83 57.8
Actinidia21332 Actinidia chinensis HOM05D006057 ORTHO05D007224 2.1e-13 79.0 92 55.4
arahy.Tifrunner.gnm1.ann1.78VVNS Arachis hypogaea HOM05D006057 ORTHO05D007224 2.1e-13 79.0 88 54.5
BcaB05g21854 Brassica carinata HOM05D006057 ORTHO05D007224 2.1e-13 79.0 89 52.8
BraA02t04741Z Brassica rapa HOM05D006057 ORTHO05D007224 3.6e-13 78.2 89 51.7
MELO3C026900.2 Cucumis melo HOM05D006057 ORTHO05D007224 3.6e-13 78.2 88 56.8
Migut.L00999 Erythranthe guttata HOM05D006057 ORTHO05D007224 3.6e-13 78.2 67 64.2
arahy.Tifrunner.gnm1.ann1.TF3SPP Arachis hypogaea HOM05D006057 ORTHO05D007224 4.7e-13 77.8 88 54.5
DCAR_012291 Daucus carota HOM05D006057 ORTHO05D007224 4.7e-13 77.8 88 55.7
Nitab4.5_0001841g0090 Nicotiana tabacum HOM05D006057 ORTHO05D007224 4.7e-13 77.8 95 52.6
BcaC03g13034 Brassica carinata HOM05D006057 ORTHO05D007224 6.2e-13 77.4 89 51.7
BcaC03g13036 Brassica carinata HOM05D006057 ORTHO05D007224 6.2e-13 77.4 89 51.7
CsaV3_3G043390 Cucumis sativus L. HOM05D006057 ORTHO05D007224 6.2e-13 77.4 89 58.4
Glyma.20G089200 Glycine max HOM05D006057 ORTHO05D007224 6.2e-13 77.4 82 58.5
MD17G1156700 Malus domestica HOM05D006057 ORTHO05D007224 8.1e-13 77.0 92 52.2
SHI19776 Sapria himalayana HOM05D006057 ORTHO05D007224 8.1e-13 77.0 72 56.9
ClCG10G013240 Citrullus lanatus HOM05D006057 ORTHO05D007224 1.1e-12 76.6 88 54.5
Lj5g0024678 Lotus japonicus HOM05D006057 ORTHO05D007224 1.1e-12 76.6 80 56.2
Psat6g157560 Pisum sativum HOM05D006057 ORTHO05D007224 1.1e-12 76.6 92 53.3
CANSAT25G1403 Cannabis sativa HOM05D006057 ORTHO05D007224 1.8e-12 75.9 88 52.3
CARHR210270 Cardamine hirsuta HOM05D006057 ORTHO05D007224 1.8e-12 75.9 82 56.1
Potri.002G184600 Populus trichocarpa HOM05D006057 ORTHO05D007224 1.8e-12 75.9 80 56.2
Thhalv10015298m.g Eutrema salsugineum HOM05D006057 ORTHO05D007224 2.4e-12 75.5 65 61.5
Ca_10224_v3 Cicer arietinum L. HOM05D006057 ORTHO05D007224 3.1e-12 75.1 89 52.8
AT5G03050 Arabidopsis thaliana HOM05D006057 ORTHO05D007224 5.3e-12 74.3 90 51.1
Ciclev10023548m.g Citrus clementina HOM05D006057 ORTHO05D007224 5.3e-12 74.3 65 61.5
PSO339G1810 Papaver somniferum HOM05D006057 ORTHO05D007224 5.3e-12 74.3 84 52.4
Migut.L00831 Erythranthe guttata HOM05D006057 ORTHO05D007224 6.9e-12 73.9 66 63.6
Phvul.007G207500 Phaseolus vulgaris HOM05D006057 ORTHO05D007224 6.9e-12 73.9 92 54.3
Sed0018142 Sechium edule HOM05D006057 ORTHO05D007224 6.9e-12 73.9 89 53.9
BcaC06g32028 Brassica carinata HOM05D006057 ORTHO05D007224 9.0e-12 73.6 89 50.6
C02p00760 Brassica napus HOM05D006057 ORTHO05D007224 9.0e-12 73.6 89 50.6
BolC2t06074H Brassica oleracea HOM05D006057 ORTHO05D007224 9.0e-12 73.6 89 50.6
RcHm_v2.0_Chr2g0148291 Rosa chinensis HOM05D006057 ORTHO05D007224 9.0e-12 73.6 92 50.0
BcaC06g32027 Brassica carinata HOM05D006057 ORTHO05D007224 1.2e-11 73.2 89 52.8
BcaNung04734 Brassica carinata HOM05D006057 ORTHO05D007224 1.2e-11 73.2 89 52.8
C09p73700 Brassica napus HOM05D006057 ORTHO05D007224 1.2e-11 73.2 89 52.8
BolC9t60100H Brassica oleracea HOM05D006057 ORTHO05D007224 1.2e-11 73.2 89 52.8
BolC9t60103H Brassica oleracea HOM05D006057 ORTHO05D007224 1.2e-11 73.2 89 52.8
AL6G12340 Arabidopsis lyrata HOM05D006057 ORTHO05D007224 1.5e-11 72.8 90 48.9
Nitab4.5_0010904g0040 Nicotiana tabacum HOM05D006057 ORTHO05D007224 4.4e-11 71.2 95 49.5
Gohir.A07G132650 Gossypium hirsutum HOM05D006057 ORTHO05D007224 5.8e-11 70.9 60 63.3
unitig_26.g10007 Utricularia gibba HOM05D006057 ORTHO05D007224 5.8e-11 70.9 79 49.4
Carub.0006s0184 Capsella rubella HOM05D006057 ORTHO05D007224 7.6e-11 70.5 90 48.9
PSO081G0045 Papaver somniferum HOM05D006057 ORTHO05D007224 7.6e-11 70.5 82 52.4
BraA10t45317Z Brassica rapa HOM05D006057 ORTHO05D007224 1.7e-10 69.3 89 51.7
PSO170G4276 Papaver somniferum HOM05D006057 ORTHO05D007224 1.7e-10 69.3 82 50.0
CDE01G0754 Ceratophyllum demersum HOM05D006057 ORTHO05D007224 3.8e-10 68.2 81 48.1
FvH4_6g36280 Fragaria vesca HOM05D006057 ORTHO05D007224 6.4e-10 67.4 84 47.6
Aqoxy5G02874 Aquilegia oxysepala HOM05D006057 ORTHO05D007224 1.1e-09 66.6 88 46.6
BcaNung05509 Brassica carinata HOM05D006057 ORTHO05D007224 1.9e-09 65.9 57 59.6
Cc08_g05070 Coffea canephora HOM05D006057 ORTHO05D007224 2.4e-09 65.5 62 64.5
VMungo0720G1137 Vigna mungo HOM05D006057 ORTHO05D007224 5.4e-09 64.3 68 54.4
Sc09g0000780 Simmondsia chinensis HOM05D006057 ORTHO05D007224 1.6e-08 62.8 89 44.9
HPP92_026861 Vanilla planifolia HOM05D006057 ORTHO05D007224 2.7e-08 62.0 88 45.5
Lalb_Chr02g0147311 Lupinus albus HOM05D006057 ORTHO05D007224 6.0e-08 60.8 88 48.9
CiPaw.07G127700 Carya illinoinensis HOM05D006057 ORTHO05D007224 7.8e-08 60.5 60 61.7
Ah.04g162100 Amaranthus hybridus HOM05D006057 ORTHO05D007224 2.3e-07 58.9 89 43.8
Hund22023 Selenicereus undatus HOM05D006057 ORTHO05D007224 2.3e-07 58.9 46 60.9
SEGI_31615 Sequoiadendron giganteum HOM05D006057 ORTHO05D007224 1.1e-06 56.6 56 55.4
Ah.06g194050 Amaranthus hybridus HOM05D006057 ORTHO05D007224 1.9e-06 55.8 89 42.7
EL10Ac4g10232 Beta vulgaris HOM05D006057 ORTHO05D007224 1.9e-06 55.8 90 41.1
AUR62000136 Chenopodium quinoa HOM05D006057 ORTHO05D007224 4.3e-06 54.7 56 50.0


User provided reference genes

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